Wall clock time and date at job start Tue Mar 31 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35950 * 117.00182 * 2 1 4 4 C 1.38665 * 120.06337 * 0.25071 * 3 2 1 5 5 C 1.38184 * 119.96733 * 180.25375 * 4 3 2 6 6 C 1.50695 * 119.95134 * 179.77451 * 5 4 3 7 7 N 1.46904 * 109.46951 * 269.72153 * 6 5 4 8 8 C 1.46900 * 111.00269 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.46884 * 174.87541 * 8 7 6 10 10 C 1.50705 * 115.55206 * 296.30337 * 9 8 7 11 11 H 1.08003 * 119.99437 * 95.20908 * 10 9 8 12 12 C 1.37877 * 120.00329 * 274.93418 * 10 9 8 13 13 N 1.31515 * 119.99732 * 355.41631 * 12 10 9 14 14 Si 1.86797 * 119.99830 * 175.41408 * 12 10 9 15 15 H 1.48503 * 109.46755 * 90.00110 * 14 12 10 16 16 H 1.48502 * 109.46887 * 209.99551 * 14 12 10 17 17 H 1.48498 * 109.47472 * 329.99881 * 14 12 10 18 18 C 1.53001 * 117.50130 * 81.98067 * 9 8 7 19 19 C 1.53000 * 117.49451 * 150.64227 * 9 8 7 20 20 C 1.38261 * 120.09540 * 359.49357 * 5 4 3 21 21 C 1.38262 * 120.12622 * 0.25551 * 20 5 4 22 22 C 1.38331 * 120.02751 * 359.97438 * 21 20 5 23 23 F 1.35102 * 120.04707 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.46758 * 300.00402 * 1 2 3 25 25 H 1.09001 * 109.46827 * 59.99839 * 1 2 3 26 26 H 1.08992 * 109.47679 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.01557 * 0.02630 * 4 3 2 28 28 H 1.09003 * 109.47471 * 149.72457 * 6 5 4 29 29 H 1.08996 * 109.47373 * 29.71608 * 6 5 4 30 30 H 1.00904 * 111.00100 * 56.04793 * 7 6 5 31 31 H 1.09002 * 109.46699 * 54.87769 * 8 7 6 32 32 H 1.08993 * 109.47270 * 294.87686 * 8 7 6 33 33 H 0.96996 * 119.99571 * 180.02562 * 13 12 10 34 34 H 1.08998 * 117.50117 * 214.99752 * 18 9 8 35 35 H 1.09002 * 117.49567 * 0.02562 * 18 9 8 36 36 H 1.08997 * 117.50075 * 359.97337 * 19 9 8 37 37 H 1.09002 * 117.49945 * 144.97567 * 19 9 8 38 38 H 1.07995 * 119.93701 * 180.27754 * 20 5 4 39 39 H 1.07996 * 119.98435 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 0.0053 5 6 1.9218 3.6053 -0.0001 6 6 1.1022 4.8698 0.0005 7 7 0.8358 5.2813 -1.3843 8 6 0.0365 6.5132 -1.4231 9 6 -0.1118 6.9794 -2.8727 10 6 1.1691 7.3697 -3.5643 11 1 1.6933 6.6503 -4.1760 12 6 1.6687 8.6467 -3.4208 13 7 0.9828 9.5502 -2.7553 14 14 3.3199 9.0934 -4.1714 15 1 3.1153 9.5960 -5.5538 16 1 3.9669 10.1491 -3.3516 17 1 4.1898 7.8905 -4.2057 18 6 -1.1986 6.3156 -3.7207 19 6 -1.3774 7.7574 -3.2385 20 6 3.3026 3.6776 0.0000 21 6 4.0581 2.5197 0.0000 22 6 3.4334 1.2855 0.0005 23 9 4.1713 0.1538 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2139 2.3201 0.0098 28 1 1.6514 5.6586 0.5146 29 1 0.1577 4.6904 0.5142 30 1 0.3843 4.5414 -1.9009 31 1 0.5354 7.2883 -0.8413 32 1 -0.9496 6.3200 -1.0009 33 1 1.3341 10.4487 -2.6547 34 1 -0.9872 6.1610 -4.7788 35 1 -1.8082 5.5469 -3.2457 36 1 -2.1046 7.9366 -2.4466 37 1 -1.2836 8.5516 -3.9792 38 1 3.7918 4.6404 0.0003 39 1 5.1365 2.5789 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326915658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:23 Heat of formation + Delta-G solvation = -48.355665 kcal Electronic energy + Delta-G solvation = -21247.206097 eV Core-core repulsion = 17876.719113 eV Total energy + Delta-G solvation = -3370.486984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.82522 -41.07172 -39.07310 -38.42827 -35.84542 -33.85766 -32.00704 -31.24371 -28.58396 -27.76870 -26.88235 -24.65387 -23.52489 -22.85375 -22.32785 -20.87881 -19.15158 -18.26757 -17.88951 -17.76959 -17.15038 -16.71102 -16.24204 -16.04241 -15.64562 -15.50683 -15.49164 -15.15264 -15.09636 -14.64331 -13.97454 -13.73004 -13.34420 -13.04994 -12.98761 -12.87013 -12.78446 -12.58024 -12.34710 -12.32118 -12.08376 -12.00278 -11.94768 -11.19565 -10.85511 -10.29698 -9.96568 -9.82358 -9.20104 -9.02450 -8.00023 -6.06302 0.06593 0.27301 1.43808 1.46716 1.56395 2.19294 2.49693 2.51516 3.22286 3.30028 3.39353 3.64990 3.75865 3.83716 4.04493 4.24300 4.31449 4.37507 4.40792 4.48925 4.55527 4.63609 4.69648 4.73454 4.77211 4.85274 4.97570 4.99153 5.02810 5.10310 5.20727 5.34359 5.57035 5.65437 5.71127 5.75230 5.91165 6.27159 6.34806 6.53279 6.73333 6.96795 7.58891 9.08156 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.004295 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.227916 B = 6517.776833 C = 7439.786303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.087 3.913 4 C -0.172 4.172 5 C -0.046 4.046 6 C 0.100 3.900 7 N -0.674 5.674 8 C 0.123 3.877 9 C 0.021 3.979 10 C -0.476 4.476 11 H 0.045 0.955 12 C 0.023 3.977 13 N -0.912 5.912 14 Si 0.941 3.059 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.190 4.190 19 C -0.160 4.160 20 C -0.113 4.113 21 C -0.112 4.112 22 C 0.039 3.961 23 F -0.146 7.146 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.122 0.878 27 H 0.155 0.845 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.338 0.662 31 H 0.043 0.957 32 H 0.015 0.985 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.141 0.859 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -15.503 8.341 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.041 3.959 4 C -0.191 4.191 5 C -0.047 4.047 6 C -0.028 4.028 7 N -0.305 5.305 8 C -0.006 4.006 9 C 0.020 3.980 10 C -0.514 4.514 11 H 0.063 0.937 12 C -0.175 4.175 13 N -0.552 5.552 14 Si 0.768 3.232 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.227 4.227 19 C -0.198 4.198 20 C -0.132 4.132 21 C -0.130 4.130 22 C 0.019 3.981 23 F -0.125 7.125 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.158 0.842 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.377 -15.214 8.339 17.353 hybrid contribution -0.054 0.295 -0.267 0.402 sum -0.431 -14.919 8.072 16.968 Atomic orbital electron populations 1.23416 0.75877 1.05886 1.02550 1.86094 1.23943 1.25707 1.88819 1.19046 0.90786 0.86057 0.99998 1.21162 1.01082 0.90213 1.06608 1.19760 0.94208 0.94026 0.96681 1.20884 0.97758 0.93579 0.90607 1.60188 1.52401 1.06036 1.11845 1.21202 0.92569 0.90650 0.96151 1.18985 0.88868 0.98279 0.91841 1.20501 1.06733 0.95779 1.28380 0.93724 1.25520 0.99546 0.96499 0.95978 1.70108 1.38469 1.03466 1.43134 0.85829 0.81557 0.77698 0.78114 1.20839 1.21235 1.19662 1.22979 1.05098 0.95010 0.99628 1.22386 1.01882 0.93221 1.02325 1.21035 0.93234 0.98595 1.00308 1.21195 1.02040 0.89450 1.00351 1.17268 0.86473 0.83096 1.11241 1.91444 1.76688 1.49694 1.94647 0.91247 0.91674 0.85975 0.82719 0.90603 0.93336 0.84384 0.93807 0.96719 0.93579 0.91054 0.89097 0.91004 0.92597 0.84165 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.92 10.36 -92.99 -0.96 -8.88 16 3 C 0.09 2.23 6.69 22.53 0.15 2.38 16 4 C -0.17 -3.97 8.69 22.36 0.19 -3.78 16 5 C -0.05 -1.19 5.39 -19.87 -0.11 -1.29 16 6 C 0.10 2.81 5.80 85.55 0.50 3.30 16 7 N -0.67 -23.72 6.34 -517.94 -3.29 -27.01 16 8 C 0.12 5.06 5.51 86.30 0.48 5.54 16 9 C 0.02 0.98 1.64 -52.93 -0.09 0.90 16 10 C -0.48 -25.53 8.71 25.60 0.22 -25.30 16 11 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 12 C 0.02 1.27 5.43 84.65 0.46 1.73 16 13 N -0.91 -51.61 12.65 21.45 0.27 -51.34 16 14 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 C -0.19 -7.72 9.96 30.62 0.30 -7.42 16 19 C -0.16 -7.33 9.15 30.62 0.28 -7.05 16 20 C -0.11 -2.90 9.69 22.28 0.22 -2.68 16 21 C -0.11 -2.71 10.02 22.30 0.22 -2.49 16 22 C 0.04 1.06 7.31 22.45 0.16 1.22 16 23 F -0.15 -4.19 17.11 44.97 0.77 -3.42 16 24 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 25 H 0.06 0.86 7.67 -2.39 -0.02 0.84 16 26 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.16 2.82 6.30 -2.91 -0.02 2.80 16 28 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 29 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.34 11.08 8.78 -89.69 -0.79 10.30 16 31 H 0.04 2.05 8.13 -2.39 -0.02 2.03 16 32 H 0.01 0.55 8.10 -2.39 -0.02 0.53 16 33 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.07 2.95 8.14 -2.39 -0.02 2.94 16 35 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -62.25 336.89 3.19 -59.06 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.26 Total: 19.32 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.11 Total: -33.59 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -3.01 Total: -78.35 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.96 Total: -8.88 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.77 Total: -3.42 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.25 3.19 -59.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326915658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.704 kcal (2) G-P(sol) polarization free energy of solvation -62.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds