Wall clock time and date at job start Tue Mar 31 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00330 * 2 1 4 4 C 1.34773 * 120.00238 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99701 * 0.02562 * 4 2 1 6 6 O 1.34639 * 120.00461 * 180.02562 * 4 2 1 7 7 C 1.45197 * 116.99936 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.46956 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.46773 * 65.00075 * 8 7 6 10 10 C 1.38825 * 119.99721 * 180.02562 * 9 8 7 11 11 C 1.39797 * 119.58412 * 359.97438 * 10 9 8 12 12 C 1.38590 * 119.48864 * 180.02562 * 11 10 9 13 13 C 1.38385 * 118.68645 * 0.02562 * 12 11 10 14 14 C 1.40563 * 119.14613 * 359.97438 * 13 12 11 15 15 C 1.41313 * 119.78156 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00203 * 6.43306 * 15 14 13 17 17 C 1.40023 * 119.99737 * 186.43292 * 15 14 13 18 18 N 1.30750 * 120.00001 * 176.32459 * 17 15 14 19 19 Si 1.86806 * 119.99972 * 356.05345 * 17 15 14 20 20 H 1.48501 * 109.46911 * 180.27289 * 19 17 15 21 21 H 1.48498 * 109.46717 * 300.27163 * 19 17 15 22 22 H 1.48497 * 109.47277 * 60.27102 * 19 17 15 23 23 N 1.31958 * 119.58381 * 180.30058 * 10 9 8 24 24 H 1.08993 * 109.47070 * 270.00131 * 1 2 3 25 25 H 1.09000 * 109.46729 * 30.00143 * 1 2 3 26 26 H 1.08997 * 109.47171 * 149.99806 * 1 2 3 27 27 H 1.08994 * 109.47510 * 240.00276 * 3 2 1 28 28 H 1.09008 * 109.46839 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47405 * 119.99260 * 3 2 1 30 30 H 1.09001 * 109.47119 * 60.00477 * 7 6 4 31 31 H 1.08997 * 109.47515 * 300.00247 * 7 6 4 32 32 H 1.08998 * 109.47156 * 304.99930 * 8 7 6 33 33 H 1.09001 * 109.47069 * 185.00097 * 8 7 6 34 34 H 0.97000 * 120.00758 * 0.02562 * 9 8 7 35 35 H 1.08002 * 120.25638 * 0.04867 * 11 10 9 36 36 H 1.08007 * 120.65934 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.42947 * 180.02562 * 13 12 11 38 38 H 0.96993 * 119.99763 * 354.92649 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5313 -2.2195 0.0005 6 8 3.4853 -1.1672 0.0010 7 6 4.1444 -2.4609 0.0022 8 6 5.6613 -2.2605 0.0033 9 7 6.0679 -1.6173 1.2551 10 6 7.4067 -1.3316 1.4857 11 6 8.3596 -1.6620 0.5176 12 6 9.6957 -1.3764 0.7502 13 6 10.0473 -0.7689 1.9428 14 6 9.0428 -0.4614 2.8767 15 6 9.3868 0.1595 4.0986 16 1 10.4005 0.4904 4.2697 17 6 8.4132 0.3458 5.0876 18 7 8.7461 0.8545 6.2452 19 14 6.6372 -0.1254 4.7505 20 1 5.8099 0.1749 5.9466 21 1 6.1308 0.6513 3.5906 22 1 6.5594 -1.5768 4.4463 23 7 7.7646 -0.7575 2.6187 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 2.8242 1.3265 -0.8899 28 1 1.4892 2.0973 -0.0005 29 1 2.8242 1.3265 0.8900 30 1 3.8519 -3.0185 -0.8876 31 1 3.8512 -3.0174 0.8923 32 1 5.9450 -1.6290 -0.8386 33 1 6.1557 -3.2279 -0.0855 34 1 5.4017 -1.3910 1.9229 35 1 8.0569 -2.1358 -0.4045 36 1 10.4477 -1.6238 0.0155 37 1 11.0802 -0.5333 2.1530 38 1 9.6779 1.0343 6.4459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327726217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:32 Heat of formation + Delta-G solvation = -51.632175 kcal Electronic energy + Delta-G solvation = -21441.973186 eV Core-core repulsion = 18091.264083 eV Total energy + Delta-G solvation = -3350.709103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.60306 -38.80546 -37.33714 -35.73364 -35.25981 -33.51139 -31.24034 -30.50766 -28.47052 -27.89720 -26.26367 -25.30502 -22.87504 -21.83854 -20.91044 -20.24453 -18.31223 -18.21820 -17.23507 -16.97046 -16.46519 -15.58013 -15.13399 -14.91325 -14.42514 -14.11371 -13.96721 -13.62061 -13.50784 -12.91488 -12.86924 -12.80530 -12.62483 -12.45849 -12.23120 -12.11787 -11.77090 -11.60197 -10.81068 -10.71267 -10.66607 -10.57245 -10.24451 -9.60364 -9.51215 -9.03757 -8.96324 -8.45949 -7.67410 -7.18825 -6.88004 -4.75051 1.97928 2.66615 2.69313 2.83921 3.61485 3.68524 3.72930 3.79626 4.08872 4.47863 4.70683 4.74986 4.81850 4.94737 5.05285 5.10920 5.21021 5.37129 5.44181 5.54534 5.60580 5.67328 5.74008 5.86758 6.10179 6.20774 6.28653 6.49387 6.60214 6.63540 7.05962 7.25721 7.45564 7.49263 7.61363 7.88936 8.02498 8.11623 8.29693 8.48622 8.74953 9.60610 10.04680 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.004834 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.272889 B = 5790.918095 C = 6804.164112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.605 5.605 3 C 0.084 3.916 4 C 0.648 3.352 5 O -0.576 6.576 6 O -0.359 6.359 7 C 0.076 3.924 8 C 0.141 3.859 9 N -0.739 5.739 10 C 0.442 3.558 11 C -0.366 4.366 12 C -0.016 4.016 13 C -0.306 4.306 14 C 0.287 3.713 15 C -0.475 4.475 16 H 0.082 0.918 17 C 0.044 3.956 18 N -0.808 5.808 19 Si 1.162 2.838 20 H -0.339 1.339 21 H -0.290 1.290 22 H -0.291 1.291 23 N -0.620 5.620 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.397 0.603 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -1.256 -12.643 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.347 5.347 3 C -0.059 4.059 4 C 0.402 3.598 5 O -0.465 6.465 6 O -0.272 6.272 7 C 0.001 3.999 8 C 0.016 3.984 9 N -0.376 5.376 10 C 0.205 3.795 11 C -0.392 4.392 12 C -0.040 4.040 13 C -0.329 4.329 14 C 0.163 3.837 15 C -0.508 4.508 16 H 0.100 0.900 17 C -0.177 4.177 18 N -0.430 5.430 19 Si 0.999 3.001 20 H -0.273 1.273 21 H -0.218 1.218 22 H -0.220 1.220 23 N -0.349 5.349 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.231 0.769 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.884 -1.421 -11.522 18.876 hybrid contribution 2.231 -0.092 -1.039 2.463 sum -12.653 -1.513 -12.561 17.893 Atomic orbital electron populations 1.21689 0.76446 1.03453 1.02346 1.46492 1.06837 1.04527 1.76806 1.21823 0.96987 0.83895 1.03166 1.18075 0.81260 0.84119 0.76304 1.90985 1.69028 1.30408 1.56117 1.86335 1.18514 1.35930 1.86453 1.23338 0.91345 0.81562 1.03668 1.21282 0.90142 0.98727 0.88297 1.44200 1.05304 1.68306 1.19802 1.18037 0.83724 0.88312 0.89407 1.20444 0.93371 1.23111 1.02271 1.20703 0.94626 0.93517 0.95189 1.21392 0.98848 1.14822 0.97800 1.18253 0.85519 0.87454 0.92452 1.20760 0.98759 1.33035 0.98209 0.89998 1.27812 1.09213 0.89472 0.91170 1.70659 1.22356 1.27713 1.22237 0.81639 0.69895 0.77575 0.70942 1.27330 1.21812 1.21956 1.65760 1.19670 1.28531 1.20941 0.92331 0.90562 0.90269 0.91658 0.90254 0.91230 0.89633 0.90327 0.91227 0.89873 0.76858 0.88170 0.88161 0.88127 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 10.41 59.85 0.62 1.44 16 2 N -0.61 -6.67 3.27 -195.40 -0.64 -7.31 16 3 C 0.08 0.75 10.17 59.85 0.61 1.36 16 4 C 0.65 9.10 8.40 54.05 0.45 9.55 16 5 O -0.58 -9.35 15.71 -19.29 -0.30 -9.65 16 6 O -0.36 -5.00 9.45 -40.32 -0.38 -5.38 16 7 C 0.08 0.93 5.60 37.16 0.21 1.14 16 8 C 0.14 1.90 5.28 -4.04 -0.02 1.88 16 9 N -0.74 -13.65 5.67 -60.39 -0.34 -14.00 16 10 C 0.44 9.94 7.65 -155.32 -1.19 8.75 16 11 C -0.37 -7.60 9.34 -38.87 -0.36 -7.97 16 12 C -0.02 -0.35 10.15 -39.40 -0.40 -0.75 16 13 C -0.31 -7.36 9.83 -38.65 -0.38 -7.74 16 14 C 0.29 7.68 6.42 -85.00 -0.55 7.13 16 15 C -0.48 -13.27 9.57 -37.74 -0.36 -13.63 16 16 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 17 C 0.04 1.23 5.52 -17.34 -0.10 1.14 16 18 N -0.81 -22.47 13.65 55.55 0.76 -21.71 16 19 Si 1.16 29.36 25.45 -169.99 -4.33 25.04 16 20 H -0.34 -8.49 7.11 56.52 0.40 -8.09 16 21 H -0.29 -7.27 6.97 56.52 0.39 -6.87 16 22 H -0.29 -7.38 6.91 56.52 0.39 -6.99 16 23 N -0.62 -16.01 4.55 -10.33 -0.05 -16.06 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.39 7.92 -51.93 -0.41 -0.02 16 26 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.47 7.79 -51.92 -0.40 0.07 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.40 7.48 8.59 -40.82 -0.35 7.13 16 35 H 0.10 1.77 6.68 -52.49 -0.35 1.42 16 36 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.28 7.49 8.72 -40.82 -0.36 7.14 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -32.98 324.92 -7.12 -40.10 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.28 Total: 1.77 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.46 Total: 2.30 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.27 Total: -59.08 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.68 Total: -15.03 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: -4.33 Total: 25.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.98 -7.12 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327726217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.529 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds