Wall clock time and date at job start Tue Mar 31 2020 01:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 120.00330 * 2 1 4 4 C 1.34773 * 120.00238 * 179.97438 * 2 1 3 5 5 O 1.21519 * 119.99701 * 0.02562 * 4 2 1 6 6 O 1.34639 * 120.00461 * 180.02562 * 4 2 1 7 7 C 1.45197 * 116.99936 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.46956 * 180.02562 * 7 6 4 9 9 N 1.46496 * 109.46773 * 65.00075 * 8 7 6 10 10 C 1.38825 * 119.99721 * 180.02562 * 9 8 7 11 11 C 1.39797 * 119.58412 * 359.97438 * 10 9 8 12 12 C 1.38590 * 119.48864 * 180.02562 * 11 10 9 13 13 C 1.38385 * 118.68645 * 0.02562 * 12 11 10 14 14 C 1.40563 * 119.14613 * 359.97438 * 13 12 11 15 15 C 1.41313 * 119.78156 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00203 * 6.43306 * 15 14 13 17 17 C 1.40023 * 119.99737 * 186.43292 * 15 14 13 18 18 N 1.30750 * 120.00001 * 176.32459 * 17 15 14 19 19 Si 1.86806 * 119.99972 * 356.05345 * 17 15 14 20 20 H 1.48501 * 109.46911 * 180.27289 * 19 17 15 21 21 H 1.48498 * 109.46717 * 300.27163 * 19 17 15 22 22 H 1.48497 * 109.47277 * 60.27102 * 19 17 15 23 23 N 1.31958 * 119.58381 * 180.30058 * 10 9 8 24 24 H 1.08993 * 109.47070 * 270.00131 * 1 2 3 25 25 H 1.09000 * 109.46729 * 30.00143 * 1 2 3 26 26 H 1.08997 * 109.47171 * 149.99806 * 1 2 3 27 27 H 1.08994 * 109.47510 * 240.00276 * 3 2 1 28 28 H 1.09008 * 109.46839 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47405 * 119.99260 * 3 2 1 30 30 H 1.09001 * 109.47119 * 60.00477 * 7 6 4 31 31 H 1.08997 * 109.47515 * 300.00247 * 7 6 4 32 32 H 1.08998 * 109.47156 * 304.99930 * 8 7 6 33 33 H 1.09001 * 109.47069 * 185.00097 * 8 7 6 34 34 H 0.97000 * 120.00758 * 0.02562 * 9 8 7 35 35 H 1.08002 * 120.25638 * 0.04867 * 11 10 9 36 36 H 1.08007 * 120.65934 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.42947 * 180.02562 * 13 12 11 38 38 H 0.96993 * 119.99763 * 354.92649 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1671 0.0005 5 8 1.5313 -2.2195 0.0005 6 8 3.4853 -1.1672 0.0010 7 6 4.1444 -2.4609 0.0022 8 6 5.6613 -2.2605 0.0033 9 7 6.0679 -1.6173 1.2551 10 6 7.4067 -1.3316 1.4857 11 6 8.3596 -1.6620 0.5176 12 6 9.6957 -1.3764 0.7502 13 6 10.0473 -0.7689 1.9428 14 6 9.0428 -0.4614 2.8767 15 6 9.3868 0.1595 4.0986 16 1 10.4005 0.4904 4.2697 17 6 8.4132 0.3458 5.0876 18 7 8.7461 0.8545 6.2452 19 14 6.6372 -0.1254 4.7505 20 1 5.8099 0.1749 5.9466 21 1 6.1308 0.6513 3.5906 22 1 6.5594 -1.5768 4.4463 23 7 7.7646 -0.7575 2.6187 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5138 27 1 2.8242 1.3265 -0.8899 28 1 1.4892 2.0973 -0.0005 29 1 2.8242 1.3265 0.8900 30 1 3.8519 -3.0185 -0.8876 31 1 3.8512 -3.0174 0.8923 32 1 5.9450 -1.6290 -0.8386 33 1 6.1557 -3.2279 -0.0855 34 1 5.4017 -1.3910 1.9229 35 1 8.0569 -2.1358 -0.4045 36 1 10.4477 -1.6238 0.0155 37 1 11.0802 -0.5333 2.1530 38 1 9.6779 1.0343 6.4459 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327726217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:32 Heat of formation + Delta-G solvation = -73.697226 kcal Electronic energy + Delta-G solvation = -21442.929998 eV Core-core repulsion = 18091.264083 eV Total energy + Delta-G solvation = -3351.665915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61273 -40.57122 -38.38788 -36.85186 -36.60356 -35.41048 -32.99709 -32.06907 -29.64281 -28.90654 -27.17943 -27.13146 -24.09471 -23.60808 -22.12438 -21.71766 -20.30632 -19.15023 -18.49819 -18.05856 -17.75496 -17.17226 -16.39303 -16.04016 -15.99348 -15.63984 -15.24570 -15.15830 -14.84828 -14.38458 -14.22592 -13.99661 -13.68913 -13.58567 -13.52952 -13.40860 -12.88526 -12.82809 -12.58365 -12.37836 -12.17413 -11.76708 -11.74839 -11.57805 -11.41895 -10.77836 -10.28763 -9.87197 -9.66033 -9.19842 -8.56758 -6.78281 0.81066 1.03959 1.10320 1.56714 1.63248 1.72403 2.01241 2.39395 2.47087 2.71342 2.84115 3.67347 3.72535 4.05630 4.16010 4.20699 4.29720 4.35885 4.46859 4.52808 4.63085 4.70224 4.74812 4.75922 4.84153 4.87131 4.92114 4.93539 5.23574 5.36286 5.40871 5.49617 5.71538 5.85997 5.97871 6.13862 6.18224 6.54926 6.59619 6.88072 7.12314 7.73895 7.98809 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.004834 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.272889 B = 5790.918095 C = 6804.164112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.603 5.603 3 C 0.082 3.918 4 C 0.638 3.362 5 O -0.606 6.606 6 O -0.369 6.369 7 C 0.077 3.923 8 C 0.140 3.860 9 N -0.737 5.737 10 C 0.423 3.577 11 C -0.343 4.343 12 C -0.008 4.008 13 C -0.331 4.331 14 C 0.272 3.728 15 C -0.515 4.515 16 H 0.064 0.936 17 C 0.017 3.983 18 N -0.836 5.836 19 Si 1.200 2.800 20 H -0.340 1.340 21 H -0.291 1.291 22 H -0.295 1.295 23 N -0.643 5.643 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.393 0.607 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 -2.067 -15.829 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.344 5.344 3 C -0.060 4.060 4 C 0.393 3.607 5 O -0.498 6.498 6 O -0.282 6.282 7 C 0.003 3.997 8 C 0.016 3.984 9 N -0.372 5.372 10 C 0.186 3.814 11 C -0.368 4.368 12 C -0.031 4.031 13 C -0.353 4.353 14 C 0.147 3.853 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.460 5.460 19 Si 1.036 2.964 20 H -0.275 1.275 21 H -0.220 1.220 22 H -0.224 1.224 23 N -0.373 5.373 24 H 0.081 0.919 25 H 0.130 0.870 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.226 0.774 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.121 0.879 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.161 -2.226 -14.745 21.989 hybrid contribution 2.565 0.054 -0.352 2.590 sum -13.596 -2.172 -15.097 20.432 Atomic orbital electron populations 1.21920 0.74783 1.04662 1.03015 1.46799 1.07972 1.04258 1.75337 1.21952 0.97723 0.83988 1.02344 1.18374 0.81199 0.84720 0.76423 1.90956 1.69428 1.31631 1.57765 1.86323 1.18691 1.36724 1.86511 1.23387 0.90525 0.81277 1.04541 1.21594 0.90976 0.99600 0.86204 1.44480 1.03704 1.67663 1.21311 1.18514 0.85783 0.88103 0.89002 1.20991 0.92739 1.20275 1.02800 1.21189 0.95994 0.91341 0.94622 1.21535 0.98586 1.16316 0.98910 1.18395 0.86729 0.87525 0.92625 1.20733 0.98251 1.36034 0.99824 0.91734 1.28462 1.10989 0.89359 0.91112 1.70671 1.22242 1.30291 1.22784 0.81095 0.67937 0.76867 0.70493 1.27475 1.21954 1.22446 1.65623 1.19450 1.29380 1.22860 0.91927 0.87040 0.91380 0.91515 0.86858 0.92950 0.87311 0.90933 0.89997 0.87449 0.77364 0.83855 0.83781 0.87890 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 10.41 127.77 1.33 2.67 16 2 N -0.60 -12.15 3.27 ******* -3.28 -15.43 16 3 C 0.08 1.28 10.17 127.77 1.30 2.58 16 4 C 0.64 17.04 8.40 129.79 1.09 18.13 16 5 O -0.61 -19.08 15.71 19.78 0.31 -18.77 16 6 O -0.37 -9.57 9.45 -55.49 -0.52 -10.10 16 7 C 0.08 1.69 5.60 71.98 0.40 2.09 16 8 C 0.14 3.19 5.28 86.38 0.46 3.65 16 9 N -0.74 -25.18 5.67 -344.98 -1.96 -27.13 16 10 C 0.42 17.89 7.65 133.42 1.02 18.91 16 11 C -0.34 -12.62 9.34 22.73 0.21 -12.41 16 12 C -0.01 -0.29 10.15 22.39 0.23 -0.06 16 13 C -0.33 -15.54 9.83 22.87 0.22 -15.32 16 14 C 0.27 14.67 6.42 40.18 0.26 14.92 16 15 C -0.52 -29.93 9.57 23.46 0.22 -29.71 16 16 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 17 C 0.02 0.96 5.52 85.29 0.47 1.43 16 18 N -0.84 -48.46 13.65 21.84 0.30 -48.16 16 19 Si 1.20 61.17 25.45 68.60 1.75 62.92 16 20 H -0.34 -17.05 7.11 99.48 0.71 -16.35 16 21 H -0.29 -14.60 6.97 99.48 0.69 -13.91 16 22 H -0.30 -15.00 6.91 99.48 0.69 -14.31 16 23 N -0.64 -32.74 4.55 -186.58 -0.85 -33.59 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.11 0.74 7.92 -2.39 -0.02 0.72 16 26 H 0.07 1.11 7.42 -2.39 -0.02 1.10 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.11 0.97 7.79 -2.38 -0.02 0.95 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.74 7.92 -2.39 -0.02 1.72 16 33 H 0.11 2.02 7.92 -2.39 -0.02 2.00 16 34 H 0.39 14.16 8.59 -92.71 -0.80 13.36 16 35 H 0.14 4.06 6.68 -2.91 -0.02 4.04 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.28 15.67 8.72 -92.71 -0.81 14.87 16 Total: -1.00 -73.29 324.92 3.16 -70.13 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.20 Total: 13.26 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 7.22 Total: 6.88 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -5.79 Total: -124.32 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.21 Total: -28.86 kcal Atomic # 14 Polarization: 61.17 SS G_CDS: 1.75 Total: 62.92 kcal Total: -73.29 3.16 -70.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327726217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.564 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds