Wall clock time and date at job start Tue Mar 31 2020 01:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40051 * 125.94866 * 2 1 4 4 C 1.31865 * 108.23203 * 179.97438 * 3 2 1 5 5 C 1.47718 * 125.98040 * 180.02562 * 4 3 2 6 6 O 1.21569 * 119.99538 * 186.84487 * 5 4 3 7 7 N 1.34771 * 120.00034 * 6.83648 * 5 4 3 8 8 C 1.46936 * 120.62645 * 175.62774 * 7 5 4 9 9 C 1.53199 * 108.89012 * 233.67277 * 8 7 5 10 10 C 1.53034 * 109.31480 * 305.29636 * 9 8 7 11 11 C 1.50694 * 109.46228 * 181.37283 * 10 9 8 12 12 H 1.08001 * 119.99912 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00313 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99969 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00320 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46766 * 60.00386 * 15 13 11 17 17 H 1.48499 * 109.47296 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47154 * 300.00652 * 15 13 11 19 19 C 1.53043 * 109.53937 * 61.36189 * 10 9 8 20 20 C 1.47203 * 120.81860 * 355.76438 * 7 5 4 21 21 C 1.41062 * 108.03430 * 0.25891 * 4 3 2 22 22 C 1.35589 * 107.79710 * 359.56700 * 21 4 3 23 23 O 1.35771 * 126.08095 * 180.15102 * 22 21 4 24 24 H 1.09001 * 109.46860 * 90.03058 * 1 2 3 25 25 H 1.09003 * 109.47011 * 210.02390 * 1 2 3 26 26 H 1.08998 * 109.47448 * 330.02309 * 1 2 3 27 27 H 1.09003 * 109.58377 * 113.81661 * 8 7 5 28 28 H 1.08991 * 109.59084 * 353.53318 * 8 7 5 29 29 H 1.08995 * 109.49225 * 65.24697 * 9 8 7 30 30 H 1.08995 * 109.49274 * 185.31123 * 9 8 7 31 31 H 1.09005 * 109.46182 * 301.34845 * 10 9 8 32 32 H 0.96996 * 119.99651 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.49205 * 58.58816 * 19 10 9 34 34 H 1.08998 * 109.49632 * 178.68284 * 19 10 9 35 35 H 1.09004 * 109.53108 * 6.54087 * 20 7 5 36 36 H 1.08994 * 109.67972 * 246.23206 * 20 7 5 37 37 H 1.08001 * 126.09647 * 179.73649 * 21 4 3 38 38 H 0.96699 * 114.00433 * 270.32510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2872 1.1338 0.0000 4 6 3.5434 0.7325 0.0006 5 6 4.7338 1.6071 0.0013 6 8 5.8426 1.1245 -0.1237 7 7 4.5907 2.9399 0.1404 8 6 5.7684 3.8130 0.2389 9 6 5.6458 4.6706 1.5025 10 6 4.3117 5.4200 1.4780 11 6 4.2023 6.2906 2.7031 12 1 5.0038 6.3075 3.4269 13 6 3.0792 7.0657 2.9001 14 7 2.1030 7.0449 2.0190 15 14 2.9434 8.1444 4.4191 16 1 4.0610 9.1222 4.4334 17 1 1.6490 8.8718 4.3955 18 1 3.0121 7.2964 5.6362 19 6 3.1592 4.4131 1.4638 20 6 3.2536 3.5527 0.1999 21 6 3.5512 -0.6781 -0.0051 22 6 2.2625 -1.0997 0.0007 23 8 1.8438 -2.3912 0.0008 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 5.8188 4.4589 -0.6377 28 1 6.6707 3.2043 0.2966 29 1 5.6866 4.0292 2.3827 30 1 6.4659 5.3877 1.5363 31 1 4.2611 6.0423 0.5845 32 1 1.3131 7.5904 2.1574 33 1 3.2235 3.7742 2.3445 34 1 2.2092 4.9475 1.4700 35 1 2.4953 2.7703 0.2330 36 1 3.0965 4.1769 -0.6797 37 1 4.4274 -1.3095 -0.0102 38 1 1.7228 -2.7656 -0.8825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328272706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:54 Heat of formation + Delta-G solvation = 15.548631 kcal Electronic energy + Delta-G solvation = -22079.980480 eV Core-core repulsion = 18732.184555 eV Total energy + Delta-G solvation = -3347.795924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.51341 -39.34578 -37.43088 -36.71931 -33.62866 -33.25150 -31.26772 -30.11925 -29.23103 -27.42588 -26.09580 -23.72690 -22.40143 -21.83151 -21.43747 -19.80325 -18.91872 -17.94180 -16.70446 -16.59666 -16.06356 -15.46911 -15.32841 -14.63351 -14.47986 -14.44732 -14.31159 -13.40155 -13.08731 -12.91437 -12.87102 -12.58721 -12.55800 -12.19958 -11.93693 -11.52434 -11.38023 -10.90395 -10.68946 -10.42635 -10.26073 -10.05117 -9.75866 -9.44755 -9.34860 -9.13095 -8.81364 -8.70223 -8.32562 -7.95942 -5.99031 -4.05078 1.30726 1.94992 2.10262 3.30231 3.32002 3.36336 3.39669 3.61669 3.88144 4.28319 4.43769 4.83484 4.95603 5.22856 5.29990 5.31701 5.37940 5.63139 5.81779 5.92859 6.01103 6.15100 6.20011 6.26161 6.28884 6.51024 6.69208 6.80997 6.95201 7.08786 7.20953 7.24016 7.37397 7.43184 7.70931 7.94543 7.98207 8.09878 8.44853 8.50595 8.98013 9.59491 11.06349 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.004730 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.757621 B = 5917.681760 C = 6846.153647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.377 5.377 3 N -0.229 5.229 4 C 0.053 3.947 5 C 0.589 3.411 6 O -0.547 6.547 7 N -0.582 5.582 8 C 0.111 3.889 9 C -0.123 4.123 10 C 0.047 3.953 11 C -0.512 4.512 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.119 4.119 20 C 0.074 3.926 21 C -0.223 4.223 22 C 0.251 3.749 23 O -0.464 6.464 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.060 0.940 37 H 0.163 0.837 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -14.964 -6.973 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.170 5.170 3 N -0.059 5.059 4 C -0.113 4.113 5 C 0.374 3.626 6 O -0.424 6.424 7 N -0.313 5.313 8 C -0.010 4.010 9 C -0.161 4.161 10 C 0.028 3.972 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.158 4.158 20 C -0.049 4.049 21 C -0.254 4.254 22 C 0.083 3.917 23 O -0.267 6.267 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.181 0.819 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -4.678 -14.206 -6.468 16.295 hybrid contribution 0.014 -0.125 0.399 0.419 sum -4.664 -14.331 -6.069 16.247 Atomic orbital electron populations 1.21955 0.74107 1.05191 1.03545 1.49698 1.07220 1.03746 1.56373 1.77725 1.00842 1.04239 1.23090 1.22040 0.92178 0.94080 1.02953 1.17053 0.86226 0.81617 0.77703 1.90741 1.24954 1.74726 1.51945 1.48225 1.09542 1.05020 1.68500 1.21783 0.87385 0.92429 0.99451 1.22016 1.01107 0.97859 0.95167 1.18668 0.88698 0.92383 0.97441 1.21177 1.03049 1.24003 1.06766 0.92778 1.24951 0.95844 0.96759 0.96359 1.69840 1.07616 1.40487 1.35124 0.86689 0.77185 0.80693 0.83605 1.20310 1.21345 1.20379 1.21965 1.04597 0.96311 0.92899 1.23002 0.82419 0.98845 1.00599 1.21091 0.95848 0.93857 1.14569 1.18712 0.88629 0.80543 1.03793 1.84893 1.88554 1.19226 1.34024 0.90487 0.89246 0.88487 0.91846 0.90196 0.92907 0.91969 0.95442 0.92995 0.94523 0.87848 0.86420 0.92188 0.81922 0.74573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 11.42 59.85 0.68 1.44 16 2 N -0.38 -4.76 4.03 -68.18 -0.28 -5.04 16 3 N -0.23 -3.68 8.90 33.34 0.30 -3.39 16 4 C 0.05 0.91 6.87 -82.91 -0.57 0.34 16 5 C 0.59 11.39 7.70 -12.39 -0.10 11.30 16 6 O -0.55 -11.44 16.34 5.30 0.09 -11.35 16 7 N -0.58 -11.38 2.98 -173.70 -0.52 -11.90 16 8 C 0.11 2.12 6.41 -3.70 -0.02 2.09 16 9 C -0.12 -2.60 5.30 -26.61 -0.14 -2.74 16 10 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 11 C -0.51 -13.88 8.56 -34.44 -0.29 -14.17 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 14 N -0.89 -24.79 11.31 55.43 0.63 -24.16 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 C -0.12 -2.77 5.15 -26.61 -0.14 -2.91 16 20 C 0.07 1.46 6.32 -3.56 -0.02 1.44 16 21 C -0.22 -3.22 10.60 -39.46 -0.42 -3.64 16 22 C 0.25 3.04 7.98 -16.72 -0.13 2.91 16 23 O -0.46 -4.03 13.58 -19.02 -0.26 -4.29 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.47 7.03 -51.93 -0.36 1.11 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 2.65 6.03 -51.93 -0.31 2.33 16 35 H 0.12 2.22 3.71 -117.73 -0.44 1.79 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.16 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.40 1.30 9.06 45.56 0.41 1.71 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -32.49 314.89 -6.23 -38.72 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -4.47 Total: 1.98 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.44 Total: -1.41 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.13 Total: -44.48 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.17 Total: -15.64 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.49 -6.23 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328272706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.265 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds