Wall clock time and date at job start Tue Mar 31 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99895 * 2 1 4 4 N 1.46502 * 109.46918 * 125.00182 * 3 2 1 5 5 C 1.46499 * 119.99648 * 262.26595 * 4 3 2 6 6 C 1.50694 * 109.47410 * 270.00257 * 5 4 3 7 7 H 1.08008 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00195 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00171 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99994 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47366 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47456 * 119.99906 * 10 8 6 13 13 H 1.48503 * 109.47274 * 240.00143 * 10 8 6 14 14 C 1.34773 * 120.00346 * 82.26890 * 4 3 2 15 15 O 1.21632 * 120.00330 * 181.19073 * 14 4 3 16 16 C 1.47171 * 119.99734 * 1.19383 * 14 4 3 17 17 C 1.37987 * 126.43242 * 170.90033 * 16 14 4 18 18 C 1.39694 * 107.63482 * 180.02562 * 17 16 14 19 19 O 1.36007 * 125.66822 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99686 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46716 * 180.02562 * 20 19 18 22 22 N 1.31220 * 108.65926 * 0.22949 * 18 17 16 23 23 N 1.36668 * 126.43963 * 350.91613 * 16 14 4 24 24 H 0.97000 * 126.09056 * 359.97438 * 23 16 14 25 25 H 1.07998 * 120.00245 * 179.97438 * 1 2 3 26 26 H 1.08011 * 119.99947 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99975 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47423 * 4.99724 * 3 2 1 29 29 H 1.09000 * 109.47209 * 244.99595 * 3 2 1 30 30 H 1.08997 * 109.47352 * 30.00286 * 5 4 3 31 31 H 1.09001 * 109.46993 * 150.00521 * 5 4 3 32 32 H 0.96999 * 120.00425 * 179.97438 * 9 8 6 33 33 H 1.07997 * 126.18303 * 0.02562 * 17 16 14 34 34 H 1.08996 * 109.47025 * 299.99718 * 20 19 18 35 35 H 1.08998 * 109.46868 * 59.99959 * 20 19 18 36 36 H 1.09004 * 109.46875 * 299.99442 * 21 20 19 37 37 H 1.08989 * 109.47013 * 59.99993 * 21 20 19 38 38 H 1.09004 * 109.46408 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6192 2.0159 2.3716 6 6 3.0569 3.4562 2.3028 7 1 3.5638 3.8252 1.4234 8 6 2.8111 4.3028 3.3630 9 7 2.1943 3.8535 4.4341 10 14 3.3543 6.0881 3.2780 11 1 4.0220 6.3409 1.9759 12 1 2.1687 6.9730 3.4069 13 1 4.3047 6.3696 4.3839 14 6 4.1941 0.7273 1.0314 15 8 4.9577 0.7309 1.9782 16 6 4.5810 0.0629 -0.2235 17 6 5.8282 -0.4392 -0.5342 18 6 5.7577 -0.9822 -1.8194 19 8 6.7834 -1.5753 -2.4871 20 6 6.5044 -2.0683 -3.7990 21 6 7.7692 -2.6973 -4.3870 22 7 4.5387 -0.8199 -2.2774 23 7 3.7727 -0.1726 -1.3001 24 1 2.8362 0.0689 -1.3751 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 1.5377 1.9705 2.4992 31 1 3.1055 1.5284 3.2166 32 1 2.0218 4.4490 5.1801 33 1 6.7011 -0.4165 0.1013 34 1 5.7168 -2.8199 -3.7448 35 1 6.1782 -1.2452 -4.4347 36 1 8.5571 -1.9460 -4.4412 37 1 8.0950 -3.5204 -3.7512 38 1 7.5562 -3.0738 -5.3876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328394685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:07 Heat of formation + Delta-G solvation = 49.751376 kcal Electronic energy + Delta-G solvation = -21576.985823 eV Core-core repulsion = 18230.673041 eV Total energy + Delta-G solvation = -3346.312782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41058 -39.16016 -37.99761 -36.21714 -33.48364 -32.33233 -32.07234 -30.50912 -29.97913 -27.65630 -26.08517 -24.12906 -23.43995 -21.56321 -21.19364 -20.35213 -19.43978 -17.56105 -17.19708 -16.60445 -16.35984 -15.65355 -15.36145 -15.05376 -14.58398 -14.51153 -14.08247 -13.93935 -13.46224 -13.17568 -12.89274 -12.70912 -12.60205 -12.25156 -11.94436 -11.80140 -11.47675 -11.27908 -10.99282 -10.95743 -10.75989 -10.71092 -10.27819 -9.76791 -9.54733 -9.39420 -8.98621 -8.55923 -8.51895 -7.94722 -6.13258 -4.18894 1.35031 2.05721 2.55998 2.69415 3.15268 3.25766 3.34101 3.37863 3.62882 3.79509 4.38040 4.62344 4.74527 4.80123 4.87220 4.92385 5.06151 5.14751 5.19084 5.22080 5.38189 5.54902 5.61795 5.72040 5.80729 5.84114 5.86035 6.22470 6.48411 6.57397 6.81081 7.05057 7.23743 7.32422 7.35565 7.60843 7.82214 8.06863 8.10779 8.64489 8.86877 9.46793 10.94917 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.004251 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.760552 B = 6584.422988 C = 7353.267340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.208 4.208 3 C 0.117 3.883 4 N -0.582 5.582 5 C 0.247 3.753 6 C -0.533 4.533 7 H 0.060 0.940 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.571 3.429 15 O -0.509 6.509 16 C 0.076 3.924 17 C -0.206 4.206 18 C 0.259 3.741 19 O -0.290 6.290 20 C 0.059 3.941 21 C -0.152 4.152 22 N -0.336 5.336 23 N -0.456 5.456 24 H 0.450 0.550 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.164 0.836 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -10.454 -15.416 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C -0.008 4.008 4 N -0.313 5.313 5 C 0.128 3.872 6 C -0.571 4.571 7 H 0.078 0.922 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.207 1.207 14 C 0.355 3.645 15 O -0.382 6.382 16 C -0.055 4.055 17 C -0.237 4.237 18 C 0.056 3.944 19 O -0.195 6.195 20 C -0.016 4.016 21 C -0.209 4.209 22 N -0.178 5.178 23 N -0.185 5.185 24 H 0.308 0.692 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.182 0.818 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.921 -10.631 -15.582 18.885 hybrid contribution 0.092 1.173 0.415 1.248 sum 1.012 -9.458 -15.167 17.903 Atomic orbital electron populations 1.23964 0.95529 1.02453 0.96903 1.23567 0.97158 0.98794 1.03227 1.21000 0.93634 0.96427 0.89756 1.48225 1.13880 1.52463 1.16720 1.19443 0.96330 0.91676 0.79710 1.21447 1.38647 0.94298 1.02732 0.92174 1.24926 0.94907 0.99110 0.94985 1.69933 1.41268 1.35985 1.05867 0.86415 0.78374 0.84202 0.78291 1.19723 1.20925 1.20744 1.17059 0.82752 0.79526 0.85194 1.90841 1.50547 1.59477 1.37343 1.21735 0.91651 1.01535 0.90555 1.21035 0.98376 1.08626 0.95679 1.20212 0.87138 0.95321 0.91702 1.86301 1.30612 1.72305 1.30258 1.22685 0.98842 0.98541 0.81561 1.21791 0.96972 1.01452 1.00684 1.77188 1.03612 1.22592 1.14451 1.47736 1.12688 1.47569 1.10458 0.69209 0.88087 0.87646 0.87113 0.87544 0.90732 0.94396 0.93248 0.92610 0.81820 0.91897 0.91852 0.91504 0.91531 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 14.32 29.01 0.42 -1.23 16 2 C -0.21 -2.67 7.90 -36.02 -0.28 -2.96 16 3 C 0.12 1.78 5.41 -5.19 -0.03 1.75 16 4 N -0.58 -11.87 2.46 -177.81 -0.44 -12.31 16 5 C 0.25 6.16 5.13 -5.20 -0.03 6.13 16 6 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 7 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 10 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.57 12.04 7.59 -12.64 -0.10 11.95 16 15 O -0.51 -12.66 16.48 5.25 0.09 -12.58 16 16 C 0.08 1.35 6.68 -82.18 -0.55 0.80 16 17 C -0.21 -3.50 10.65 -39.13 -0.42 -3.92 16 18 C 0.26 4.09 7.85 -17.27 -0.14 3.95 16 19 O -0.29 -4.05 10.22 -19.76 -0.20 -4.26 16 20 C 0.06 0.62 6.33 37.16 0.24 0.85 16 21 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 22 N -0.34 -5.17 12.05 30.46 0.37 -4.80 16 23 N -0.46 -6.89 5.76 33.41 0.19 -6.69 16 24 H 0.45 5.87 3.62 -182.65 -0.66 5.21 16 25 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 26 H 0.11 1.09 7.84 -52.48 -0.41 0.67 16 27 H 0.11 1.44 7.35 -52.49 -0.39 1.05 16 28 H 0.11 1.60 7.66 -51.93 -0.40 1.20 16 29 H 0.08 1.03 5.16 -51.93 -0.27 0.76 16 30 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.05 1.39 7.40 -51.93 -0.38 1.01 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.94 -0.42 0.08 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -31.90 328.17 -5.69 -37.59 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.43 Total: 3.41 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -0.92 Total: 3.34 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.86 Total: -48.76 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.12 Total: -16.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.90 -5.69 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328394685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.341 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds