Wall clock time and date at job start Tue Mar 31 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99895 * 2 1 4 4 N 1.46502 * 109.46918 * 125.00182 * 3 2 1 5 5 C 1.46499 * 119.99648 * 262.26595 * 4 3 2 6 6 C 1.50694 * 109.47410 * 270.00257 * 5 4 3 7 7 H 1.08008 * 119.99838 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00195 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00171 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99994 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47366 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47456 * 119.99906 * 10 8 6 13 13 H 1.48503 * 109.47274 * 240.00143 * 10 8 6 14 14 C 1.34773 * 120.00346 * 82.26890 * 4 3 2 15 15 O 1.21632 * 120.00330 * 181.19073 * 14 4 3 16 16 C 1.47171 * 119.99734 * 1.19383 * 14 4 3 17 17 C 1.37987 * 126.43242 * 170.90033 * 16 14 4 18 18 C 1.39694 * 107.63482 * 180.02562 * 17 16 14 19 19 O 1.36007 * 125.66822 * 179.97438 * 18 17 16 20 20 C 1.42903 * 116.99686 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.46716 * 180.02562 * 20 19 18 22 22 N 1.31220 * 108.65926 * 0.22949 * 18 17 16 23 23 N 1.36668 * 126.43963 * 350.91613 * 16 14 4 24 24 H 0.97000 * 126.09056 * 359.97438 * 23 16 14 25 25 H 1.07998 * 120.00245 * 179.97438 * 1 2 3 26 26 H 1.08011 * 119.99947 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99975 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47423 * 4.99724 * 3 2 1 29 29 H 1.09000 * 109.47209 * 244.99595 * 3 2 1 30 30 H 1.08997 * 109.47352 * 30.00286 * 5 4 3 31 31 H 1.09001 * 109.46993 * 150.00521 * 5 4 3 32 32 H 0.96999 * 120.00425 * 179.97438 * 9 8 6 33 33 H 1.07997 * 126.18303 * 0.02562 * 17 16 14 34 34 H 1.08996 * 109.47025 * 299.99718 * 20 19 18 35 35 H 1.08998 * 109.46868 * 59.99959 * 20 19 18 36 36 H 1.09004 * 109.46875 * 299.99442 * 21 20 19 37 37 H 1.08989 * 109.47013 * 59.99993 * 21 20 19 38 38 H 1.09004 * 109.46408 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6192 2.0159 2.3716 6 6 3.0569 3.4562 2.3028 7 1 3.5638 3.8252 1.4234 8 6 2.8111 4.3028 3.3630 9 7 2.1943 3.8535 4.4341 10 14 3.3543 6.0881 3.2780 11 1 4.0220 6.3409 1.9759 12 1 2.1687 6.9730 3.4069 13 1 4.3047 6.3696 4.3839 14 6 4.1941 0.7273 1.0314 15 8 4.9577 0.7309 1.9782 16 6 4.5810 0.0629 -0.2235 17 6 5.8282 -0.4392 -0.5342 18 6 5.7577 -0.9822 -1.8194 19 8 6.7834 -1.5753 -2.4871 20 6 6.5044 -2.0683 -3.7990 21 6 7.7692 -2.6973 -4.3870 22 7 4.5387 -0.8199 -2.2774 23 7 3.7727 -0.1726 -1.3001 24 1 2.8362 0.0689 -1.3751 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9313 30 1 1.5377 1.9705 2.4992 31 1 3.1055 1.5284 3.2166 32 1 2.0218 4.4490 5.1801 33 1 6.7011 -0.4165 0.1013 34 1 5.7168 -2.8199 -3.7448 35 1 6.1782 -1.2452 -4.4347 36 1 8.5571 -1.9460 -4.4412 37 1 8.0950 -3.5204 -3.7512 38 1 7.5562 -3.0738 -5.3876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328394685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:07 Heat of formation + Delta-G solvation = 27.242667 kcal Electronic energy + Delta-G solvation = -21577.961874 eV Core-core repulsion = 18230.673041 eV Total energy + Delta-G solvation = -3347.288833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.73851 -40.62722 -39.21234 -37.69896 -35.28048 -33.89081 -33.04754 -31.82055 -31.19301 -29.49207 -27.42405 -25.80940 -24.58025 -22.94877 -22.47047 -21.55943 -20.69508 -19.01904 -18.67197 -18.31416 -17.40699 -17.34726 -16.79146 -16.46192 -16.24913 -15.74735 -15.32494 -15.20572 -14.75801 -14.57963 -14.33793 -14.07120 -13.58798 -13.42430 -13.38702 -13.18537 -12.90932 -12.66084 -12.60610 -12.38081 -12.26497 -11.97375 -11.81921 -11.70513 -11.11572 -10.66792 -10.56670 -10.31017 -9.82636 -9.64549 -8.24540 -6.38760 -0.06984 1.03254 1.37438 1.38540 1.39735 1.41543 1.52323 1.82797 2.10847 2.34733 2.43491 3.06492 3.30351 3.52119 3.73004 3.96178 4.07820 4.08074 4.14095 4.21641 4.42239 4.43027 4.62090 4.78912 4.90752 4.93572 4.96527 5.02285 5.17196 5.24911 5.36441 5.54693 5.65122 5.72985 5.79365 6.00429 6.18165 6.34723 6.45563 6.68544 7.01727 7.32318 8.83244 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.004251 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.760552 B = 6584.422988 C = 7353.267340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.231 4.231 3 C 0.114 3.886 4 N -0.583 5.583 5 C 0.263 3.737 6 C -0.547 4.547 7 H 0.055 0.945 8 C 0.013 3.987 9 N -0.924 5.924 10 Si 0.966 3.034 11 H -0.268 1.268 12 H -0.269 1.269 13 H -0.282 1.282 14 C 0.569 3.431 15 O -0.560 6.560 16 C 0.067 3.933 17 C -0.211 4.211 18 C 0.260 3.740 19 O -0.298 6.298 20 C 0.050 3.950 21 C -0.146 4.146 22 N -0.324 5.324 23 N -0.440 5.440 24 H 0.459 0.541 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.007 0.993 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 -10.560 -17.704 20.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.250 4.250 3 C -0.009 4.009 4 N -0.313 5.313 5 C 0.143 3.857 6 C -0.586 4.586 7 H 0.073 0.927 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.791 3.209 11 H -0.193 1.193 12 H -0.194 1.194 13 H -0.208 1.208 14 C 0.354 3.646 15 O -0.438 6.438 16 C -0.064 4.064 17 C -0.242 4.242 18 C 0.057 3.943 19 O -0.203 6.203 20 C -0.025 4.025 21 C -0.203 4.203 22 N -0.167 5.167 23 N -0.170 5.170 24 H 0.319 0.681 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.182 0.818 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.269 -10.752 -17.932 20.910 hybrid contribution 0.232 1.126 1.052 1.558 sum 0.502 -9.626 -16.880 19.439 Atomic orbital electron populations 1.24265 0.94798 1.04049 0.93054 1.23322 0.97735 0.97288 1.06643 1.21249 0.93127 0.98216 0.88313 1.48159 1.14740 1.51575 1.16811 1.18925 0.95404 0.90783 0.80631 1.21701 1.38678 0.95458 1.02737 0.92684 1.25781 0.94827 1.03470 0.94551 1.70035 1.42136 1.37609 1.06532 0.85388 0.78275 0.79096 0.78173 1.19276 1.19382 1.20822 1.17431 0.82279 0.79094 0.85761 1.90800 1.52059 1.61553 1.39354 1.21107 0.92494 1.02778 0.90037 1.21170 0.98219 1.08378 0.96475 1.20192 0.87505 0.95215 0.91376 1.86322 1.30104 1.72007 1.31834 1.23027 1.00659 0.98827 0.79948 1.21823 0.95523 1.01214 1.01775 1.77196 1.03492 1.22063 1.13960 1.47711 1.12878 1.46926 1.09495 0.68109 0.85681 0.86787 0.87190 0.87284 0.89198 0.94577 0.97476 0.92270 0.81818 0.91442 0.91538 0.91560 0.91487 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 14.32 67.78 0.97 -1.41 16 2 C -0.23 -5.58 7.90 25.65 0.20 -5.38 16 3 C 0.11 3.39 5.41 85.63 0.46 3.85 16 4 N -0.58 -24.34 2.46 -834.70 -2.06 -26.40 16 5 C 0.26 13.60 5.13 85.63 0.44 14.04 16 6 C -0.55 -30.50 9.39 25.60 0.24 -30.26 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.75 5.46 84.66 0.46 1.21 16 9 N -0.92 -54.05 13.29 21.45 0.28 -53.76 16 10 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.57 24.77 7.59 86.59 0.66 25.43 16 15 O -0.56 -29.38 16.48 -4.13 -0.07 -29.44 16 16 C 0.07 2.37 6.68 40.68 0.27 2.65 16 17 C -0.21 -7.16 10.65 22.56 0.24 -6.92 16 18 C 0.26 7.91 7.85 85.14 0.67 8.57 16 19 O -0.30 -7.92 10.22 -93.63 -0.96 -8.88 16 20 C 0.05 0.94 6.33 71.98 0.46 1.40 16 21 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 22 N -0.32 -9.41 12.05 -170.75 -2.06 -11.47 16 23 N -0.44 -12.77 5.76 -48.20 -0.28 -13.04 16 24 H 0.46 11.24 3.62 -213.36 -0.77 10.47 16 25 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 26 H 0.11 2.02 7.84 -2.90 -0.02 2.00 16 27 H 0.11 2.72 7.35 -2.91 -0.02 2.69 16 28 H 0.11 3.17 7.66 -2.39 -0.02 3.16 16 29 H 0.09 2.37 5.16 -2.39 -0.01 2.36 16 30 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 31 H 0.01 0.43 7.40 -2.39 -0.02 0.41 16 32 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.16 5.45 8.06 -2.91 -0.02 5.43 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -70.14 328.17 3.01 -67.13 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.30 Total: 17.94 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.81 Total: 12.06 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.11 Total: -104.68 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.02 Total: -38.32 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.14 3.01 -67.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328394685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.372 kcal (2) G-P(sol) polarization free energy of solvation -70.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds