Wall clock time and date at job start Tue Mar 31 2020 00:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47009 * 2 1 4 4 C 1.42900 * 113.99961 * 184.64068 * 3 2 1 5 5 H 1.08997 * 109.47035 * 329.94271 * 4 3 2 6 6 C 1.50707 * 109.46768 * 89.93996 * 4 3 2 7 7 O 1.21309 * 119.99675 * 5.00192 * 6 4 3 8 8 N 1.34771 * 119.99957 * 185.00036 * 6 4 3 9 9 C 1.40595 * 120.00063 * 180.02562 * 8 6 4 10 10 C 1.40647 * 126.08001 * 359.69068 * 9 8 6 11 11 N 1.30909 * 108.38896 * 179.81964 * 10 9 8 12 12 N 1.40068 * 108.40334 * 0.43910 * 11 10 9 13 13 C 1.37322 * 126.07102 * 179.69874 * 12 11 10 14 14 H 1.08003 * 120.00068 * 180.02562 * 13 12 11 15 15 C 1.38992 * 119.99913 * 0.02688 * 13 12 11 16 16 N 1.31294 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46950 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.46969 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47068 * 300.00094 * 17 15 13 21 21 C 1.35682 * 126.08405 * 180.02562 * 9 8 6 22 22 C 1.52995 * 109.47365 * 209.93702 * 4 3 2 23 23 C 1.53006 * 117.49597 * 132.00726 * 22 4 3 24 24 C 1.53007 * 117.49465 * 63.35156 * 22 4 3 25 25 H 1.08999 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46775 * 299.99802 * 1 2 3 27 27 H 1.08998 * 109.47291 * 59.99412 * 1 2 3 28 28 H 1.08995 * 109.46640 * 240.00428 * 2 1 3 29 29 H 1.08998 * 109.46912 * 119.99909 * 2 1 3 30 30 H 0.96999 * 120.00252 * 0.02562 * 8 6 4 31 31 H 1.08003 * 125.81013 * 359.96690 * 10 9 8 32 32 H 0.97002 * 120.00032 * 180.02562 * 16 15 13 33 33 H 1.07995 * 126.24405 * 359.97438 * 21 9 8 34 34 H 1.08991 * 115.55348 * 277.68000 * 22 4 3 35 35 H 1.09006 * 117.49957 * 0.02562 * 23 22 4 36 36 H 1.09000 * 117.49652 * 145.02175 * 23 22 4 37 37 H 1.08998 * 117.49260 * 214.97205 * 24 22 4 38 38 H 1.08994 * 117.50220 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4616 -0.1056 5 1 3.8964 0.5905 0.3513 6 6 3.8179 1.5386 -1.5590 7 8 2.9606 1.5910 -2.4158 8 7 5.1199 1.5493 -1.9069 9 6 5.4847 1.6216 -3.2628 10 6 4.6018 1.6815 -4.3560 11 7 5.3096 1.7436 -5.4555 12 7 6.6667 1.7157 -5.1100 13 6 7.7247 1.7566 -5.9844 14 1 8.7370 1.7289 -5.6090 15 6 7.4928 1.8336 -7.3527 16 7 6.2622 1.8668 -7.8091 17 14 8.9320 1.8885 -8.5423 18 1 9.7508 0.6595 -8.3858 19 1 8.4208 1.9683 -9.9343 20 1 9.7685 3.0807 -8.2526 21 6 6.7510 1.6397 -3.7498 22 6 3.8916 2.7285 0.6153 23 6 5.0721 2.5994 1.5801 24 6 3.6570 2.8084 2.1251 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8053 1.5070 -1.2219 31 1 3.5234 1.6793 -4.2982 32 1 6.1004 1.9202 -8.7640 33 1 7.6596 1.6016 -3.1674 34 1 3.8078 3.6524 0.0433 35 1 5.5179 1.6120 1.7009 36 1 5.7647 3.4388 1.6431 37 1 3.4193 3.7852 2.5464 38 1 3.1712 1.9587 2.6047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328821223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:07 Heat of formation + Delta-G solvation = 27.909240 kcal Electronic energy + Delta-G solvation = -21479.670171 eV Core-core repulsion = 18132.410243 eV Total energy + Delta-G solvation = -3347.259928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.12736 -39.18490 -37.43829 -36.60447 -34.10876 -33.10056 -31.39865 -30.23613 -28.58982 -26.94339 -24.71418 -22.96346 -22.45202 -21.56082 -20.90958 -20.17881 -19.37129 -17.74222 -16.94094 -16.81158 -15.63257 -15.43844 -15.26999 -14.94057 -14.81301 -14.03165 -13.88304 -13.46015 -13.11049 -12.97309 -12.87775 -12.56552 -11.88152 -11.71048 -11.64365 -11.48874 -11.39598 -11.24433 -11.11075 -10.95559 -10.60493 -10.54740 -10.45315 -10.11805 -10.02905 -9.13274 -8.85317 -8.71527 -8.03218 -6.66597 -6.53478 -4.20610 2.82044 3.03725 3.05575 3.09834 3.20517 3.56652 3.69488 3.86757 4.10935 4.41427 4.58206 4.68058 4.78726 4.86174 4.90074 5.04208 5.05365 5.16328 5.32425 5.37837 5.46395 5.46553 5.66087 5.71396 5.92202 5.93071 6.02769 6.11586 6.26553 6.48522 6.90734 6.97327 7.08346 7.20670 7.28170 7.88225 8.22269 8.31754 8.66489 8.90429 9.40508 9.69867 10.42513 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.003730 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.249418 B = 7505.338267 C = 8250.475334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.352 6.352 4 C 0.112 3.888 5 H 0.079 0.921 6 C 0.477 3.523 7 O -0.521 6.521 8 N -0.620 5.620 9 C -0.059 4.059 10 C -0.034 4.034 11 N -0.260 5.260 12 N -0.143 5.143 13 C -0.324 4.324 14 H 0.115 0.885 15 C 0.046 3.954 16 N -0.770 5.770 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.173 4.173 24 C -0.162 4.162 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.396 0.604 31 H 0.175 0.825 32 H 0.275 0.725 33 H 0.145 0.855 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -1.898 17.259 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.051 3.949 5 H 0.097 0.903 6 C 0.262 3.738 7 O -0.396 6.396 8 N -0.264 5.264 9 C -0.165 4.165 10 C -0.209 4.209 11 N -0.092 5.092 12 N 0.089 4.911 13 C -0.457 4.457 14 H 0.133 0.867 15 C -0.171 4.171 16 N -0.397 5.397 17 Si 0.758 3.242 18 H -0.192 1.192 19 H -0.201 1.201 20 H -0.192 1.192 21 C -0.235 4.235 22 C -0.169 4.169 23 C -0.210 4.210 24 C -0.199 4.199 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.229 0.771 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.163 0.837 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.079 -1.622 15.158 15.552 hybrid contribution 1.273 -0.274 0.706 1.481 sum -1.806 -1.896 15.863 16.078 Atomic orbital electron populations 1.21700 0.93571 1.02039 1.03199 1.22558 0.95931 0.83724 0.99927 1.87991 1.18730 1.26501 1.93700 1.21379 0.83713 0.97611 0.92246 0.90278 1.20936 0.82664 0.79056 0.91142 1.90608 1.49479 1.48745 1.50806 1.42521 1.06636 1.71117 1.06155 1.17298 0.92794 1.23435 0.82946 1.24103 1.00051 1.07982 0.88793 1.78253 0.85352 1.25681 1.19880 1.44534 1.05144 1.39088 1.02290 1.19819 0.85410 1.53426 0.87007 0.86697 1.25635 0.97887 0.95515 0.98030 1.70210 1.19268 1.35231 1.14985 0.85902 0.80010 0.79438 0.78822 1.19186 1.20142 1.19175 1.21249 0.96245 1.19992 0.86037 1.22113 1.03552 0.98580 0.92677 1.23105 0.91387 1.03625 1.02847 1.22855 0.98557 1.03433 0.95024 0.91272 0.92100 0.91422 0.92859 0.93723 0.77132 0.80828 0.91431 0.83746 0.86684 0.88430 0.87964 0.88465 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.68 6.44 37.16 0.24 0.92 16 3 O -0.35 -5.21 9.48 -55.09 -0.52 -5.73 16 4 C 0.11 1.53 2.69 -27.88 -0.07 1.45 16 5 H 0.08 0.87 7.61 -51.93 -0.40 0.48 16 6 C 0.48 8.75 7.09 -10.98 -0.08 8.67 16 7 O -0.52 -11.85 13.66 -14.33 -0.20 -12.05 16 8 N -0.62 -11.26 5.43 -10.00 -0.05 -11.31 16 9 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 10 C -0.03 -0.92 10.85 -17.04 -0.18 -1.10 16 11 N -0.26 -7.72 10.40 30.80 0.32 -7.40 16 12 N -0.14 -3.97 3.74 -11.41 -0.04 -4.02 16 13 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 14 H 0.12 2.73 7.83 -52.48 -0.41 2.31 16 15 C 0.05 1.21 5.50 -17.50 -0.10 1.12 16 16 N -0.77 -21.79 11.81 55.50 0.66 -21.14 16 17 Si 0.93 19.05 29.55 -169.99 -5.02 14.03 16 18 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 22 C -0.15 -1.74 5.31 -90.62 -0.48 -2.22 16 23 C -0.17 -1.46 10.18 -26.69 -0.27 -1.73 16 24 C -0.16 -1.45 10.21 -26.69 -0.27 -1.73 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 5.56 8.83 -40.82 -0.36 5.20 16 31 H 0.17 4.72 5.92 -52.48 -0.31 4.40 16 32 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 34 H 0.12 1.50 8.13 -51.93 -0.42 1.08 16 35 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -34.33 330.45 -6.90 -41.22 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.26 Total: 10.21 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -1.76 Total: -8.80 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.88 Total: -43.87 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.72 Total: -17.78 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.33 -6.90 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328821223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.133 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds