Wall clock time and date at job start Tue Mar 31 2020 00:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.47009 * 2 1 4 4 C 1.42900 * 113.99961 * 184.64068 * 3 2 1 5 5 H 1.08997 * 109.47035 * 329.94271 * 4 3 2 6 6 C 1.50707 * 109.46768 * 89.93996 * 4 3 2 7 7 O 1.21309 * 119.99675 * 5.00192 * 6 4 3 8 8 N 1.34771 * 119.99957 * 185.00036 * 6 4 3 9 9 C 1.40595 * 120.00063 * 180.02562 * 8 6 4 10 10 C 1.40647 * 126.08001 * 359.69068 * 9 8 6 11 11 N 1.30909 * 108.38896 * 179.81964 * 10 9 8 12 12 N 1.40068 * 108.40334 * 0.43910 * 11 10 9 13 13 C 1.37322 * 126.07102 * 179.69874 * 12 11 10 14 14 H 1.08003 * 120.00068 * 180.02562 * 13 12 11 15 15 C 1.38992 * 119.99913 * 0.02688 * 13 12 11 16 16 N 1.31294 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.46950 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.46969 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47068 * 300.00094 * 17 15 13 21 21 C 1.35682 * 126.08405 * 180.02562 * 9 8 6 22 22 C 1.52995 * 109.47365 * 209.93702 * 4 3 2 23 23 C 1.53006 * 117.49597 * 132.00726 * 22 4 3 24 24 C 1.53007 * 117.49465 * 63.35156 * 22 4 3 25 25 H 1.08999 * 109.47074 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46775 * 299.99802 * 1 2 3 27 27 H 1.08998 * 109.47291 * 59.99412 * 1 2 3 28 28 H 1.08995 * 109.46640 * 240.00428 * 2 1 3 29 29 H 1.08998 * 109.46912 * 119.99909 * 2 1 3 30 30 H 0.96999 * 120.00252 * 0.02562 * 8 6 4 31 31 H 1.08003 * 125.81013 * 359.96690 * 10 9 8 32 32 H 0.97002 * 120.00032 * 180.02562 * 16 15 13 33 33 H 1.07995 * 126.24405 * 359.97438 * 21 9 8 34 34 H 1.08991 * 115.55348 * 277.68000 * 22 4 3 35 35 H 1.09006 * 117.49957 * 0.02562 * 23 22 4 36 36 H 1.09000 * 117.49652 * 145.02175 * 23 22 4 37 37 H 1.08998 * 117.49260 * 214.97205 * 24 22 4 38 38 H 1.08994 * 117.50220 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4616 -0.1056 5 1 3.8964 0.5905 0.3513 6 6 3.8179 1.5386 -1.5590 7 8 2.9606 1.5910 -2.4158 8 7 5.1199 1.5493 -1.9069 9 6 5.4847 1.6216 -3.2628 10 6 4.6018 1.6815 -4.3560 11 7 5.3096 1.7436 -5.4555 12 7 6.6667 1.7157 -5.1100 13 6 7.7247 1.7566 -5.9844 14 1 8.7370 1.7289 -5.6090 15 6 7.4928 1.8336 -7.3527 16 7 6.2622 1.8668 -7.8091 17 14 8.9320 1.8885 -8.5423 18 1 9.7508 0.6595 -8.3858 19 1 8.4208 1.9683 -9.9343 20 1 9.7685 3.0807 -8.2526 21 6 6.7510 1.6397 -3.7498 22 6 3.8916 2.7285 0.6153 23 6 5.0721 2.5994 1.5801 24 6 3.6570 2.8084 2.1251 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8053 1.5070 -1.2219 31 1 3.5234 1.6793 -4.2982 32 1 6.1004 1.9202 -8.7640 33 1 7.6596 1.6016 -3.1674 34 1 3.8078 3.6524 0.0433 35 1 5.5179 1.6120 1.7009 36 1 5.7647 3.4388 1.6431 37 1 3.4193 3.7852 2.5464 38 1 3.1712 1.9587 2.6047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328821223.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:06 Heat of formation + Delta-G solvation = 4.747440 kcal Electronic energy + Delta-G solvation = -21480.674542 eV Core-core repulsion = 18132.410243 eV Total energy + Delta-G solvation = -3348.264299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79391 -40.75637 -38.74987 -37.48142 -35.87646 -34.93491 -32.41998 -32.17981 -30.17322 -28.44231 -26.60772 -23.92296 -23.12702 -22.99189 -22.55343 -21.55190 -21.15631 -19.43072 -18.43254 -17.96293 -17.41339 -16.78193 -16.57618 -16.15991 -16.03869 -15.65120 -15.42608 -14.89311 -14.78616 -14.58881 -14.00492 -13.50348 -13.39180 -13.30764 -12.93751 -12.87525 -12.80664 -12.39948 -12.31888 -12.13973 -12.06516 -11.82079 -11.51397 -11.30894 -11.06400 -10.98985 -10.83094 -10.17840 -10.10976 -8.53551 -8.46970 -6.24888 1.20377 1.39751 1.50035 1.56624 1.84915 1.99006 2.20839 2.47557 2.49857 2.88479 3.09046 3.22674 3.63007 3.82034 3.86870 4.06109 4.18068 4.24243 4.29687 4.43233 4.46371 4.57846 4.61171 4.82042 4.86475 4.99383 5.02607 5.05937 5.08242 5.20255 5.25127 5.28843 5.32645 5.46578 5.95082 6.08400 6.31428 6.72839 6.75952 7.38514 7.46857 7.67317 8.52339 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.003730 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.249418 B = 7505.338267 C = 8250.475334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.373 6.373 4 C 0.125 3.875 5 H 0.115 0.885 6 C 0.473 3.527 7 O -0.572 6.572 8 N -0.608 5.608 9 C -0.046 4.046 10 C -0.063 4.063 11 N -0.311 5.311 12 N -0.167 5.167 13 C -0.356 4.356 14 H 0.143 0.857 15 C -0.007 4.007 16 N -0.826 5.826 17 Si 1.021 2.979 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.253 1.253 21 C -0.079 4.079 22 C -0.180 4.180 23 C -0.150 4.150 24 C -0.150 4.150 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.420 0.580 31 H 0.161 0.839 32 H 0.276 0.724 33 H 0.191 0.809 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -2.463 20.056 20.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.291 6.291 4 C 0.063 3.937 5 H 0.133 0.867 6 C 0.260 3.740 7 O -0.450 6.450 8 N -0.255 5.255 9 C -0.152 4.152 10 C -0.238 4.238 11 N -0.143 5.143 12 N 0.064 4.936 13 C -0.486 4.486 14 H 0.160 0.840 15 C -0.219 4.219 16 N -0.454 5.454 17 Si 0.839 3.161 18 H -0.176 1.176 19 H -0.204 1.204 20 H -0.176 1.176 21 C -0.229 4.229 22 C -0.199 4.199 23 C -0.187 4.187 24 C -0.187 4.187 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.257 0.743 31 H 0.178 0.822 32 H 0.086 0.914 33 H 0.208 0.792 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.673 -2.191 18.035 18.180 hybrid contribution 0.435 -0.102 -0.021 0.447 sum -0.239 -2.292 18.014 18.161 Atomic orbital electron populations 1.21726 0.92660 1.03373 1.02548 1.22774 0.96875 0.82832 1.00382 1.87991 1.19615 1.28110 1.93376 1.21434 0.83532 1.00144 0.88571 0.86725 1.22096 0.81897 0.76855 0.93153 1.90591 1.50888 1.50646 1.52920 1.42449 1.07641 1.70892 1.04488 1.17390 0.92024 1.21040 0.84728 1.24092 0.99920 1.09628 0.90148 1.78150 0.87044 1.27539 1.21595 1.44846 1.04634 1.40197 1.03918 1.20627 0.86318 1.53912 0.87792 0.83965 1.26916 1.00975 0.94076 0.99890 1.70406 1.22357 1.37235 1.15414 0.84635 0.75799 0.80321 0.75322 1.17601 1.20405 1.17648 1.22007 0.97877 1.17926 0.85106 1.21980 1.07440 0.96540 0.93935 1.23281 0.90880 1.05242 0.99305 1.22965 0.99107 1.04335 0.92326 0.88987 0.90874 0.93884 0.95183 0.90249 0.74316 0.82185 0.91424 0.79213 0.89169 0.86284 0.86956 0.87773 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 10.28 71.98 0.74 -2.23 16 2 C 0.05 1.11 6.44 71.98 0.46 1.57 16 3 O -0.37 -10.74 9.48 -129.99 -1.23 -11.97 16 4 C 0.12 3.18 2.69 29.85 0.08 3.26 16 5 H 0.12 2.11 7.61 -2.39 -0.02 2.09 16 6 C 0.47 17.33 7.09 87.66 0.62 17.96 16 7 O -0.57 -27.24 13.66 15.87 0.22 -27.02 16 8 N -0.61 -21.43 5.43 -303.92 -1.65 -23.08 16 9 C -0.05 -2.15 6.90 37.73 0.26 -1.89 16 10 C -0.06 -3.58 10.85 85.42 0.93 -2.65 16 11 N -0.31 -19.31 10.40 -56.47 -0.59 -19.90 16 12 N -0.17 -9.42 3.74 -190.01 -0.71 -10.13 16 13 C -0.36 -18.98 10.25 84.01 0.86 -18.12 16 14 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16 15 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 16 N -0.83 -48.54 11.81 21.66 0.26 -48.29 16 17 Si 1.02 38.78 29.55 68.60 2.03 40.81 16 18 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 19 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 21 C -0.08 -3.68 11.49 83.38 0.96 -2.73 16 22 C -0.18 -3.79 5.31 -10.79 -0.06 -3.85 16 23 C -0.15 -1.93 10.18 30.62 0.31 -1.62 16 24 C -0.15 -2.21 10.21 30.62 0.31 -1.89 16 25 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.42 10.58 8.83 -92.71 -0.82 9.76 16 31 H 0.16 9.38 5.92 -2.91 -0.02 9.36 16 32 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.19 6.85 8.06 -2.91 -0.02 6.83 16 34 H 0.09 2.34 8.13 -2.39 -0.02 2.32 16 35 H 0.12 1.06 8.07 -2.38 -0.02 1.04 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.61 330.45 4.52 -76.09 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.26 Total: 35.58 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 5.95 Total: -12.10 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -2.69 Total: -101.38 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.02 Total: -38.99 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -80.61 4.52 -76.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328821223.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.839 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds