Wall clock time and date at job start Tue Mar 31 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00173 * 2 1 4 4 H 1.09004 * 109.50219 * 329.90621 * 3 2 1 5 5 C 1.53143 * 109.50642 * 209.78595 * 3 2 1 6 6 C 1.53243 * 109.52045 * 170.26194 * 5 3 2 7 7 N 1.46564 * 108.78413 * 50.55939 * 6 5 3 8 8 C 1.35406 * 127.54491 * 163.12317 * 7 6 5 9 9 C 1.36679 * 106.67643 * 180.25865 * 8 7 6 10 10 C 1.47234 * 126.20075 * 179.81101 * 9 8 7 11 11 O 1.21650 * 120.00604 * 354.84469 * 10 9 8 12 12 N 1.34780 * 119.99508 * 174.84429 * 10 9 8 13 13 C 1.46501 * 119.99616 * 175.33601 * 12 10 9 14 14 C 1.36957 * 120.00242 * 355.60652 * 12 10 9 15 15 H 1.07996 * 119.99515 * 35.36060 * 14 12 10 16 16 C 1.38975 * 119.99857 * 215.35832 * 14 12 10 17 17 N 1.31411 * 120.00458 * 5.40422 * 16 14 12 18 18 Si 1.86802 * 119.99842 * 185.39667 * 16 14 12 19 19 H 1.48510 * 109.46887 * 90.00460 * 18 16 14 20 20 H 1.48501 * 109.47125 * 209.99984 * 18 16 14 21 21 H 1.48492 * 109.47295 * 330.00293 * 18 16 14 22 22 N 1.35882 * 107.59408 * 359.54638 * 9 8 7 23 23 C 1.29789 * 108.98202 * 0.23908 * 22 9 8 24 24 C 1.51105 * 127.17017 * 180.10338 * 23 22 9 25 25 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47521 * 300.00396 * 1 2 3 27 27 H 1.09004 * 109.46798 * 60.00474 * 1 2 3 28 28 H 1.09001 * 109.45727 * 290.27398 * 5 3 2 29 29 H 1.08994 * 109.46191 * 50.25636 * 5 3 2 30 30 H 1.09004 * 109.58308 * 170.34468 * 6 5 3 31 31 H 1.09004 * 109.58535 * 290.76478 * 6 5 3 32 32 H 1.08001 * 126.66339 * 0.10114 * 8 7 6 33 33 H 1.08995 * 109.47519 * 94.82278 * 13 12 10 34 34 H 1.09001 * 109.46682 * 214.82178 * 13 12 10 35 35 H 1.08998 * 109.47200 * 334.81462 * 13 12 10 36 36 H 0.96998 * 120.00343 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.72016 * 283.68881 * 24 23 22 38 38 H 1.09000 * 109.72047 * 44.34236 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 1.9995 -0.5152 5 6 3.3627 1.2630 -0.7171 6 6 3.8730 2.6918 -0.9328 7 7 3.8091 3.4132 0.3415 8 6 4.4393 4.5658 0.6697 9 6 4.0861 4.8527 1.9585 10 6 4.5337 6.0142 2.7448 11 8 5.3623 6.7772 2.2852 12 7 4.0254 6.2322 3.9739 13 6 4.5438 7.3275 4.7972 14 6 3.0281 5.4263 4.4553 15 1 3.0174 4.3749 4.2090 16 6 2.0301 5.9617 5.2608 17 7 1.9821 7.2575 5.4739 18 14 0.7567 4.8392 6.0405 19 1 1.2422 4.3877 7.3693 20 1 -0.5205 5.5788 6.2053 21 1 0.5360 3.6589 5.1668 22 7 3.2423 3.8748 2.3805 23 6 3.0752 3.0179 1.4201 24 6 2.2185 1.7734 1.4458 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0786 0.7095 -0.1095 29 1 3.2469 0.7694 -1.6819 30 1 4.9043 2.6622 -1.2845 31 1 3.2477 3.1958 -1.6698 32 1 5.0959 5.1445 0.0369 33 1 3.9185 8.2101 4.6633 34 1 4.5330 7.0302 5.8458 35 1 5.5656 7.5569 4.4952 36 1 1.2858 7.6311 6.0364 37 1 2.7214 0.9925 2.0163 38 1 1.2546 1.9998 1.9015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329333729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:39 Heat of formation + Delta-G solvation = -2.602825 kcal Electronic energy + Delta-G solvation = -22230.310162 eV Core-core repulsion = 18881.727132 eV Total energy + Delta-G solvation = -3348.583031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81879 -38.71141 -37.85805 -35.23522 -34.51697 -32.57244 -31.20034 -29.78508 -28.11584 -26.88093 -26.15040 -24.61810 -23.80595 -21.97646 -21.47626 -19.04952 -18.85119 -17.45346 -16.86387 -16.31102 -15.70444 -15.44734 -15.33581 -14.87758 -14.29831 -14.09530 -13.94221 -13.58762 -13.39519 -13.17854 -13.13822 -12.60773 -12.33537 -11.94343 -11.64073 -11.54715 -11.38398 -11.07863 -11.02951 -10.96870 -10.76727 -10.48178 -10.19366 -9.90825 -9.15206 -9.08573 -8.83448 -8.40639 -7.82428 -7.29467 -6.09776 -3.74229 2.30762 2.96793 3.15002 3.32876 3.33913 3.35536 3.41312 4.29730 4.33754 4.43365 4.48231 4.71408 4.81684 4.94137 4.98450 5.08365 5.14551 5.17280 5.19718 5.35880 5.39169 5.46750 5.51228 5.62128 5.81291 5.89525 6.09140 6.44049 6.61159 6.83399 6.87888 7.08188 7.22038 7.49375 7.50317 7.88974 8.13812 8.59198 8.82852 9.34255 9.73912 10.12446 10.93876 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.006226 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.445040 B = 4495.913366 C = 5998.514610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.087 3.913 4 H 0.069 0.931 5 C -0.130 4.130 6 C 0.109 3.891 7 N -0.466 5.466 8 C -0.002 4.002 9 C -0.002 4.002 10 C 0.530 3.470 11 O -0.617 6.617 12 N -0.424 5.424 13 C 0.115 3.885 14 C -0.317 4.317 15 H 0.134 0.866 16 C 0.030 3.970 17 N -0.884 5.884 18 Si 0.922 3.078 19 H -0.280 1.280 20 H -0.288 1.288 21 H -0.266 1.266 22 N -0.418 5.418 23 C 0.182 3.818 24 C -0.050 4.050 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -13.668 -12.343 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.299 6.299 3 C 0.029 3.971 4 H 0.087 0.913 5 C -0.167 4.167 6 C -0.013 4.013 7 N -0.152 5.152 8 C -0.138 4.138 9 C -0.132 4.132 10 C 0.319 3.681 11 O -0.506 6.506 12 N -0.139 5.139 13 C -0.028 4.028 14 C -0.446 4.446 15 H 0.151 0.849 16 C -0.173 4.173 17 N -0.523 5.523 18 Si 0.749 3.251 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.191 1.191 22 N -0.137 5.137 23 C -0.080 4.080 24 C -0.089 4.089 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.198 0.802 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.070 -13.390 -11.731 17.922 hybrid contribution -0.721 -0.068 -0.258 0.768 sum -2.791 -13.458 -11.989 18.238 Atomic orbital electron populations 1.22843 0.80671 1.02865 1.00438 1.87898 1.20012 1.26956 1.95046 1.22157 0.94701 0.85050 0.95198 0.91320 1.21906 0.96593 0.95539 1.02700 1.21872 1.03268 0.91774 0.84413 1.45409 1.36991 1.19922 1.12845 1.22375 1.03152 0.89992 0.98245 1.20817 1.01511 0.97847 0.92981 1.16950 0.85000 0.84674 0.81468 1.90605 1.39286 1.49570 1.71105 1.43414 1.31504 1.27724 1.11291 1.21368 0.96001 0.91424 0.94007 1.20687 1.01111 0.94421 1.28396 0.84915 1.25551 0.97816 0.95680 0.98227 1.69974 1.33952 1.10692 1.37690 0.85993 0.79735 0.80135 0.79218 1.20673 1.21390 1.19061 1.70881 1.15063 1.02065 1.25681 1.23512 1.00395 0.99767 0.84311 1.20575 0.99270 0.91685 0.97350 0.89481 0.93462 0.93958 0.89742 0.88758 0.88735 0.89897 0.80228 0.91812 0.92859 0.94456 0.92634 0.88630 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.82 101.05 1.09 1.32 16 2 O -0.38 -3.99 10.35 -35.23 -0.36 -4.36 16 3 C 0.09 0.93 2.63 -26.46 -0.07 0.86 16 4 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16 5 C -0.13 -1.15 5.59 -26.53 -0.15 -1.30 16 6 C 0.11 1.07 6.96 -3.88 -0.03 1.04 16 7 N -0.47 -7.22 3.13 -113.24 -0.35 -7.58 16 8 C 0.00 -0.03 11.36 -16.54 -0.19 -0.22 16 9 C 0.00 -0.05 6.70 -82.98 -0.56 -0.60 16 10 C 0.53 14.53 7.62 -12.60 -0.10 14.44 16 11 O -0.62 -17.59 16.44 5.23 0.09 -17.51 16 12 N -0.42 -11.99 2.97 -123.49 -0.37 -12.36 16 13 C 0.12 3.05 8.79 59.85 0.53 3.58 16 14 C -0.32 -8.93 8.43 -14.99 -0.13 -9.05 16 15 H 0.13 3.70 5.12 -52.49 -0.27 3.43 16 16 C 0.03 0.84 5.27 -17.46 -0.09 0.74 16 17 N -0.88 -25.23 11.13 55.50 0.62 -24.62 16 18 Si 0.92 21.38 29.56 -169.99 -5.02 16.36 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 N -0.42 -9.50 7.86 -7.01 -0.06 -9.56 16 23 C 0.18 3.24 7.64 -154.62 -1.18 2.06 16 24 C -0.05 -0.68 5.95 -27.49 -0.16 -0.84 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 28 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.18 2.98 8.06 -52.49 -0.42 2.55 16 33 H 0.06 1.77 7.18 -51.93 -0.37 1.39 16 34 H 0.05 1.38 7.92 -51.93 -0.41 0.97 16 35 H 0.04 0.93 7.35 -51.93 -0.38 0.55 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -34.93 315.41 -6.93 -41.86 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.20 Total: 0.98 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -1.03 Total: 12.02 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.16 Total: -54.11 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.28 Total: -21.87 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.93 -6.93 -41.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329333729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.257 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds