Wall clock time and date at job start Tue Mar 31 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00173 * 2 1 4 4 H 1.09004 * 109.50219 * 329.90621 * 3 2 1 5 5 C 1.53143 * 109.50642 * 209.78595 * 3 2 1 6 6 C 1.53243 * 109.52045 * 170.26194 * 5 3 2 7 7 N 1.46564 * 108.78413 * 50.55939 * 6 5 3 8 8 C 1.35406 * 127.54491 * 163.12317 * 7 6 5 9 9 C 1.36679 * 106.67643 * 180.25865 * 8 7 6 10 10 C 1.47234 * 126.20075 * 179.81101 * 9 8 7 11 11 O 1.21650 * 120.00604 * 354.84469 * 10 9 8 12 12 N 1.34780 * 119.99508 * 174.84429 * 10 9 8 13 13 C 1.46501 * 119.99616 * 175.33601 * 12 10 9 14 14 C 1.36957 * 120.00242 * 355.60652 * 12 10 9 15 15 H 1.07996 * 119.99515 * 35.36060 * 14 12 10 16 16 C 1.38975 * 119.99857 * 215.35832 * 14 12 10 17 17 N 1.31411 * 120.00458 * 5.40422 * 16 14 12 18 18 Si 1.86802 * 119.99842 * 185.39667 * 16 14 12 19 19 H 1.48510 * 109.46887 * 90.00460 * 18 16 14 20 20 H 1.48501 * 109.47125 * 209.99984 * 18 16 14 21 21 H 1.48492 * 109.47295 * 330.00293 * 18 16 14 22 22 N 1.35882 * 107.59408 * 359.54638 * 9 8 7 23 23 C 1.29789 * 108.98202 * 0.23908 * 22 9 8 24 24 C 1.51105 * 127.17017 * 180.10338 * 23 22 9 25 25 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47521 * 300.00396 * 1 2 3 27 27 H 1.09004 * 109.46798 * 60.00474 * 1 2 3 28 28 H 1.09001 * 109.45727 * 290.27398 * 5 3 2 29 29 H 1.08994 * 109.46191 * 50.25636 * 5 3 2 30 30 H 1.09004 * 109.58308 * 170.34468 * 6 5 3 31 31 H 1.09004 * 109.58535 * 290.76478 * 6 5 3 32 32 H 1.08001 * 126.66339 * 0.10114 * 8 7 6 33 33 H 1.08995 * 109.47519 * 94.82278 * 13 12 10 34 34 H 1.09001 * 109.46682 * 214.82178 * 13 12 10 35 35 H 1.08998 * 109.47200 * 334.81462 * 13 12 10 36 36 H 0.96998 * 120.00343 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.72016 * 283.68881 * 24 23 22 38 38 H 1.09000 * 109.72047 * 44.34236 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 1.9995 -0.5152 5 6 3.3627 1.2630 -0.7171 6 6 3.8730 2.6918 -0.9328 7 7 3.8091 3.4132 0.3415 8 6 4.4393 4.5658 0.6697 9 6 4.0861 4.8527 1.9585 10 6 4.5337 6.0142 2.7448 11 8 5.3623 6.7772 2.2852 12 7 4.0254 6.2322 3.9739 13 6 4.5438 7.3275 4.7972 14 6 3.0281 5.4263 4.4553 15 1 3.0174 4.3749 4.2090 16 6 2.0301 5.9617 5.2608 17 7 1.9821 7.2575 5.4739 18 14 0.7567 4.8392 6.0405 19 1 1.2422 4.3877 7.3693 20 1 -0.5205 5.5788 6.2053 21 1 0.5360 3.6589 5.1668 22 7 3.2423 3.8748 2.3805 23 6 3.0752 3.0179 1.4201 24 6 2.2185 1.7734 1.4458 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0786 0.7095 -0.1095 29 1 3.2469 0.7694 -1.6819 30 1 4.9043 2.6622 -1.2845 31 1 3.2477 3.1958 -1.6698 32 1 5.0959 5.1445 0.0369 33 1 3.9185 8.2101 4.6633 34 1 4.5330 7.0302 5.8458 35 1 5.5656 7.5569 4.4952 36 1 1.2858 7.6311 6.0364 37 1 2.7214 0.9925 2.0163 38 1 1.2546 1.9998 1.9015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329333729.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:38 Heat of formation + Delta-G solvation = -26.100170 kcal Electronic energy + Delta-G solvation = -22231.329084 eV Core-core repulsion = 18881.727132 eV Total energy + Delta-G solvation = -3349.601952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.21183 -40.12634 -39.31643 -36.63503 -36.26683 -33.77251 -33.30473 -31.04752 -29.33997 -28.40384 -27.46092 -26.51547 -24.90920 -23.16395 -22.98039 -20.84363 -20.16625 -19.16743 -17.83446 -17.68026 -17.16551 -16.70289 -16.41299 -16.25088 -16.06655 -15.83529 -15.56941 -14.72629 -14.67746 -14.56323 -14.34445 -14.08886 -13.69595 -13.32740 -13.07902 -13.06239 -12.75257 -12.71164 -12.53670 -12.36727 -12.17525 -12.04373 -11.83098 -11.06417 -10.82707 -10.69834 -10.49449 -10.32635 -9.54765 -9.23358 -8.18295 -5.90382 0.76656 1.41952 1.44003 1.58227 1.65176 1.78078 2.37019 2.58233 2.76812 3.02357 3.27360 3.38658 3.58242 3.66533 3.95055 4.06653 4.15080 4.28634 4.41703 4.47048 4.51408 4.56807 4.63741 4.72713 4.75794 4.89748 4.91133 4.91735 4.96912 5.04663 5.21123 5.29289 5.53819 5.81622 6.03613 6.15033 6.23663 6.73513 7.03645 7.27412 7.66430 8.02306 8.86265 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.006226 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.445040 B = 4495.913366 C = 5998.514610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.389 6.389 3 C 0.093 3.907 4 H 0.077 0.923 5 C -0.123 4.123 6 C 0.100 3.900 7 N -0.452 5.452 8 C 0.029 3.971 9 C -0.063 4.063 10 C 0.522 3.478 11 O -0.641 6.641 12 N -0.447 5.447 13 C 0.127 3.873 14 C -0.331 4.331 15 H 0.135 0.865 16 C -0.018 4.018 17 N -0.917 5.917 18 Si 0.990 3.010 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.258 1.258 22 N -0.467 5.467 23 C 0.191 3.809 24 C -0.050 4.050 25 H 0.102 0.898 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 -16.319 -14.710 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.308 6.308 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.161 4.161 6 C -0.020 4.020 7 N -0.136 5.136 8 C -0.110 4.110 9 C -0.191 4.191 10 C 0.313 3.687 11 O -0.531 6.531 12 N -0.162 5.162 13 C -0.016 4.016 14 C -0.460 4.460 15 H 0.152 0.848 16 C -0.217 4.217 17 N -0.557 5.557 18 Si 0.813 3.187 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.182 1.182 22 N -0.187 5.187 23 C -0.073 4.073 24 C -0.089 4.089 25 H 0.121 0.879 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.221 0.779 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.878 -16.077 -14.128 21.595 hybrid contribution -0.436 0.681 0.330 0.873 sum -3.313 -15.396 -13.798 20.938 Atomic orbital electron populations 1.23033 0.79532 1.04117 1.00843 1.87895 1.21314 1.26634 1.94931 1.22106 0.96058 0.85407 0.92954 0.90481 1.21923 0.95142 0.94936 1.04069 1.22433 1.05857 0.91814 0.81861 1.45699 1.34859 1.18702 1.14295 1.22594 1.01590 0.90321 0.96496 1.20512 1.05170 0.98510 0.94958 1.17598 0.84167 0.85530 0.81418 1.90545 1.40094 1.50802 1.71694 1.43675 1.32245 1.28218 1.12103 1.21178 0.95804 0.90723 0.93883 1.20932 1.01532 0.94681 1.28817 0.84849 1.26451 0.99605 0.97166 0.98525 1.70105 1.34811 1.12277 1.38528 0.84970 0.76922 0.78306 0.78468 1.19742 1.21021 1.18213 1.70619 1.16325 1.03260 1.28474 1.24038 0.99791 0.99610 0.83892 1.20756 0.98107 0.89930 1.00144 0.87926 0.94031 0.92589 0.90270 0.85467 0.85932 0.87316 0.77929 0.93666 0.93138 0.93821 0.92555 0.88368 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.39 -6.86 10.35 -148.98 -1.54 -8.40 16 3 C 0.09 1.65 2.63 30.77 0.08 1.73 16 4 H 0.08 1.26 7.77 -2.39 -0.02 1.24 16 5 C -0.12 -1.62 5.59 30.72 0.17 -1.45 16 6 C 0.10 1.48 6.96 86.45 0.60 2.08 16 7 N -0.45 -12.80 3.13 -512.19 -1.60 -14.40 16 8 C 0.03 1.07 11.36 83.78 0.95 2.02 16 9 C -0.06 -3.04 6.70 40.52 0.27 -2.76 16 10 C 0.52 29.57 7.62 86.61 0.66 30.23 16 11 O -0.64 -37.57 16.44 -4.19 -0.07 -37.64 16 12 N -0.45 -26.26 2.97 -662.85 -1.97 -28.23 16 13 C 0.13 7.08 8.79 127.77 1.12 8.20 16 14 C -0.33 -19.21 8.43 84.07 0.71 -18.50 16 15 H 0.13 7.65 5.12 -2.91 -0.01 7.63 16 16 C -0.02 -1.02 5.27 84.93 0.45 -0.57 16 17 N -0.92 -53.86 11.13 21.67 0.24 -53.62 16 18 Si 0.99 44.41 29.56 68.60 2.03 46.44 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 22 N -0.47 -21.43 7.86 -176.08 -1.38 -22.81 16 23 C 0.19 6.52 7.64 138.05 1.06 7.58 16 24 C -0.05 -1.28 5.95 30.11 0.18 -1.10 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.59 8.09 -2.39 -0.02 0.57 16 28 H 0.08 1.18 8.11 -2.39 -0.02 1.16 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.20 6.24 8.06 -2.91 -0.02 6.22 16 33 H 0.04 2.63 7.18 -2.39 -0.02 2.61 16 34 H 0.05 2.74 7.92 -2.39 -0.02 2.72 16 35 H 0.04 2.29 7.35 -2.39 -0.02 2.27 16 36 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -79.19 315.41 4.25 -74.94 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.07 Total: 14.76 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.48 Total: 28.96 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -4.71 Total: -119.07 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -1.61 Total: -46.04 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -79.19 4.25 -74.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329333729.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.844 kcal (2) G-P(sol) polarization free energy of solvation -79.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds