Wall clock time and date at job start Tue Mar 31 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47056 * 2 1 4 4 N 1.41603 * 113.99789 * 179.97438 * 3 2 1 5 5 C 1.46505 * 120.00019 * 270.00053 * 4 3 2 6 6 C 1.34775 * 120.00137 * 90.00490 * 4 3 2 7 7 O 1.21282 * 120.00105 * 180.02562 * 6 4 3 8 8 C 1.50695 * 119.99817 * 359.97438 * 6 4 3 9 9 N 1.46503 * 109.46947 * 180.02562 * 8 6 4 10 10 C 1.38826 * 120.00054 * 180.02562 * 9 8 6 11 11 C 1.39791 * 119.58266 * 359.97438 * 10 9 8 12 12 C 1.38599 * 119.49248 * 180.02562 * 11 10 9 13 13 C 1.38391 * 118.67476 * 0.02562 * 12 11 10 14 14 C 1.40548 * 119.15144 * 359.97438 * 13 12 11 15 15 C 1.41318 * 119.78154 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00336 * 8.96514 * 15 14 13 17 17 C 1.40026 * 120.00025 * 188.97271 * 15 14 13 18 18 N 1.30743 * 120.00038 * 195.97185 * 17 15 14 19 19 Si 1.86801 * 119.99948 * 15.68904 * 17 15 14 20 20 H 1.48510 * 109.47084 * 270.28029 * 19 17 15 21 21 H 1.48499 * 109.47034 * 30.27869 * 19 17 15 22 22 H 1.48498 * 109.47207 * 150.27964 * 19 17 15 23 23 N 1.31954 * 119.58669 * 180.29727 * 10 9 8 24 24 H 1.08999 * 109.47238 * 300.00299 * 1 2 3 25 25 H 1.09008 * 109.46830 * 60.00314 * 1 2 3 26 26 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47238 * 239.99701 * 2 1 3 28 28 H 1.08999 * 109.46841 * 119.99892 * 2 1 3 29 29 H 1.09006 * 109.47088 * 270.00015 * 5 4 3 30 30 H 1.08998 * 109.47139 * 29.99711 * 5 4 3 31 31 H 1.08993 * 109.47301 * 150.00306 * 5 4 3 32 32 H 1.08997 * 109.47487 * 60.00668 * 8 6 4 33 33 H 1.09003 * 109.47567 * 300.00170 * 8 6 4 34 34 H 0.97005 * 120.00177 * 359.97438 * 9 8 6 35 35 H 1.07999 * 120.25743 * 0.04371 * 11 10 9 36 36 H 1.07994 * 120.66289 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.42113 * 180.02562 * 13 12 11 38 38 H 0.96997 * 119.99957 * 354.51109 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 7 3.4179 1.4590 0.0006 5 6 4.1476 1.5170 1.2696 6 6 4.0902 1.5121 -1.1663 7 8 5.2993 1.6074 -1.1658 8 6 3.3396 1.4520 -2.4717 9 7 4.2892 1.5266 -3.5848 10 6 3.8285 1.4899 -4.8939 11 6 2.4567 1.3811 -5.1399 12 6 1.9988 1.3442 -6.4476 13 6 2.9215 1.4161 -7.4765 14 6 4.2877 1.5245 -7.1647 15 6 5.2413 1.5994 -8.2049 16 1 4.9163 1.7193 -9.2279 17 6 6.6076 1.5181 -7.9094 18 7 7.4917 1.8929 -8.7966 19 14 7.1668 0.8815 -6.2447 20 1 7.2759 2.0156 -5.2921 21 1 6.1781 -0.1013 -5.7330 22 1 8.4909 0.2241 -6.3854 23 7 4.6914 1.5517 -5.8902 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.2475 2.5559 1.5842 30 1 3.6006 0.9584 2.0291 31 1 5.1376 1.0800 1.1398 32 1 2.6445 2.2895 -2.5301 33 1 2.7855 0.5151 -2.5294 34 1 5.2399 1.6023 -3.4072 35 1 1.7590 1.3266 -4.3174 36 1 0.9432 1.2601 -6.6593 37 1 2.5958 1.3902 -8.5059 38 1 7.2060 2.1518 -9.6867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329649617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:16 Heat of formation + Delta-G solvation = -1.629736 kcal Electronic energy + Delta-G solvation = -21563.973333 eV Core-core repulsion = 18215.432499 eV Total energy + Delta-G solvation = -3348.540834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16721 -38.63661 -37.83861 -35.14119 -33.83082 -33.40672 -31.09634 -30.91200 -29.96144 -27.97359 -25.30686 -25.26212 -23.29686 -21.80210 -20.90119 -20.17526 -18.46014 -18.04151 -17.18129 -16.43070 -16.15623 -15.50893 -15.29072 -14.97916 -14.50043 -14.36945 -13.84199 -13.70507 -13.55975 -13.12443 -13.02764 -12.67043 -12.53379 -12.52418 -12.25155 -12.10778 -11.92187 -11.75846 -10.80886 -10.74383 -10.61979 -10.09799 -10.06450 -9.69652 -9.46272 -9.32788 -8.89614 -8.40019 -7.70761 -7.19648 -6.85545 -4.70154 1.50923 2.25144 2.73556 2.87242 3.40649 3.64845 3.73100 3.98644 4.10680 4.48058 4.56991 4.64780 4.69751 4.70588 4.88696 4.96143 5.13574 5.32157 5.40452 5.42271 5.45698 5.46728 5.69798 5.70025 5.88958 6.04684 6.28400 6.53807 6.58422 6.66720 7.02842 7.30032 7.48900 7.52186 7.63547 7.74557 7.94119 8.06487 8.36373 8.51927 8.79010 9.68222 10.06114 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004767 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.005298 B = 5872.168760 C = 6927.005356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.017 3.983 3 O -0.138 6.138 4 N -0.483 5.483 5 C 0.087 3.913 6 C 0.520 3.480 7 O -0.510 6.510 8 C 0.129 3.871 9 N -0.733 5.733 10 C 0.440 3.560 11 C -0.368 4.368 12 C -0.018 4.018 13 C -0.306 4.306 14 C 0.288 3.712 15 C -0.479 4.479 16 H 0.082 0.918 17 C 0.051 3.949 18 N -0.804 5.804 19 Si 1.144 2.856 20 H -0.286 1.286 21 H -0.280 1.280 22 H -0.330 1.330 23 N -0.614 5.614 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -3.695 18.702 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 O -0.144 6.144 4 N -0.262 5.262 5 C -0.053 4.053 6 C 0.310 3.690 7 O -0.385 6.385 8 C 0.000 4.000 9 N -0.373 5.373 10 C 0.203 3.797 11 C -0.394 4.394 12 C -0.042 4.042 13 C -0.328 4.328 14 C 0.164 3.836 15 C -0.511 4.511 16 H 0.101 0.899 17 C -0.171 4.171 18 N -0.426 5.426 19 Si 0.977 3.023 20 H -0.213 1.213 21 H -0.207 1.207 22 H -0.263 1.263 23 N -0.342 5.342 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.103 0.897 34 H 0.244 0.756 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.800 -3.612 19.720 21.894 hybrid contribution -2.240 0.088 -1.127 2.509 sum -11.040 -3.525 18.592 21.909 Atomic orbital electron populations 1.21724 0.91830 1.03238 1.03699 1.23178 0.96300 0.84899 1.01721 1.90682 1.01174 1.25678 1.96849 1.49867 0.95429 1.74236 1.06680 1.21911 0.96786 1.03051 0.83560 1.20955 0.87616 0.75313 0.85126 1.90776 1.13183 1.48870 1.85638 1.20774 0.92267 1.03630 0.83308 1.43958 1.08940 1.83295 1.01147 1.17963 0.89083 0.88897 0.83777 1.20458 0.93218 1.29133 0.96626 1.20678 0.97376 0.93588 0.92514 1.21421 0.94038 1.19594 0.97769 1.18184 0.91343 0.86221 0.87872 1.20700 0.92606 1.43340 0.94490 0.89950 1.27691 0.92870 0.89914 1.06583 1.70625 1.38817 1.27156 1.05990 0.82094 0.71205 0.77663 0.71320 1.21282 1.20700 1.26300 1.66215 1.35945 1.32333 0.99694 0.91526 0.91050 0.90185 0.91874 0.92226 0.91440 0.90532 0.89266 0.88789 0.89747 0.75618 0.88341 0.88199 0.88135 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.02 0.13 7.09 37.16 0.26 0.39 16 3 O -0.14 -1.41 10.48 -11.47 -0.12 -1.53 16 4 N -0.48 -5.53 3.36 -67.08 -0.23 -5.76 16 5 C 0.09 0.75 10.82 59.85 0.65 1.40 16 6 C 0.52 7.61 7.82 -10.99 -0.09 7.52 16 7 O -0.51 -8.99 15.25 5.56 0.08 -8.91 16 8 C 0.13 1.96 4.67 -5.19 -0.02 1.94 16 9 N -0.73 -14.81 5.69 -61.57 -0.35 -15.16 16 10 C 0.44 10.29 7.65 -155.32 -1.19 9.10 16 11 C -0.37 -7.80 9.34 -38.87 -0.36 -8.16 16 12 C -0.02 -0.38 10.15 -39.39 -0.40 -0.78 16 13 C -0.31 -7.44 9.83 -38.66 -0.38 -7.82 16 14 C 0.29 7.82 6.27 -85.00 -0.53 7.29 16 15 C -0.48 -13.52 9.51 -37.74 -0.36 -13.87 16 16 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 17 C 0.05 1.45 5.51 -17.34 -0.10 1.35 16 18 N -0.80 -22.59 13.65 55.55 0.76 -21.83 16 19 Si 1.14 29.58 25.92 -169.99 -4.41 25.17 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.28 -7.32 6.54 56.52 0.37 -6.95 16 22 H -0.33 -8.34 7.11 56.52 0.40 -7.94 16 23 N -0.61 -16.34 5.04 -10.33 -0.05 -16.40 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.52 7.13 -51.93 -0.37 0.15 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.82 7.42 -51.93 -0.39 0.43 16 32 H 0.09 1.34 7.92 -51.93 -0.41 0.93 16 33 H 0.08 1.15 6.90 -51.93 -0.36 0.79 16 34 H 0.41 8.71 7.56 -40.82 -0.31 8.40 16 35 H 0.10 1.76 6.68 -52.49 -0.35 1.41 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 37 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.28 7.58 8.73 -40.82 -0.36 7.22 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -32.34 324.45 -6.73 -39.07 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.17 Total: 2.57 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.14 Total: -2.13 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.13 Total: -59.14 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.04 Total: -10.43 kcal Atomic # 14 Polarization: 29.58 SS G_CDS: -4.41 Total: 25.17 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.34 -6.73 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329649617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.442 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds