Wall clock time and date at job start Tue Mar 31 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47056 * 2 1 4 4 N 1.41603 * 113.99789 * 179.97438 * 3 2 1 5 5 C 1.46505 * 120.00019 * 270.00053 * 4 3 2 6 6 C 1.34775 * 120.00137 * 90.00490 * 4 3 2 7 7 O 1.21282 * 120.00105 * 180.02562 * 6 4 3 8 8 C 1.50695 * 119.99817 * 359.97438 * 6 4 3 9 9 N 1.46503 * 109.46947 * 180.02562 * 8 6 4 10 10 C 1.38826 * 120.00054 * 180.02562 * 9 8 6 11 11 C 1.39791 * 119.58266 * 359.97438 * 10 9 8 12 12 C 1.38599 * 119.49248 * 180.02562 * 11 10 9 13 13 C 1.38391 * 118.67476 * 0.02562 * 12 11 10 14 14 C 1.40548 * 119.15144 * 359.97438 * 13 12 11 15 15 C 1.41318 * 119.78154 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00336 * 8.96514 * 15 14 13 17 17 C 1.40026 * 120.00025 * 188.97271 * 15 14 13 18 18 N 1.30743 * 120.00038 * 195.97185 * 17 15 14 19 19 Si 1.86801 * 119.99948 * 15.68904 * 17 15 14 20 20 H 1.48510 * 109.47084 * 270.28029 * 19 17 15 21 21 H 1.48499 * 109.47034 * 30.27869 * 19 17 15 22 22 H 1.48498 * 109.47207 * 150.27964 * 19 17 15 23 23 N 1.31954 * 119.58669 * 180.29727 * 10 9 8 24 24 H 1.08999 * 109.47238 * 300.00299 * 1 2 3 25 25 H 1.09008 * 109.46830 * 60.00314 * 1 2 3 26 26 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47238 * 239.99701 * 2 1 3 28 28 H 1.08999 * 109.46841 * 119.99892 * 2 1 3 29 29 H 1.09006 * 109.47088 * 270.00015 * 5 4 3 30 30 H 1.08998 * 109.47139 * 29.99711 * 5 4 3 31 31 H 1.08993 * 109.47301 * 150.00306 * 5 4 3 32 32 H 1.08997 * 109.47487 * 60.00668 * 8 6 4 33 33 H 1.09003 * 109.47567 * 300.00170 * 8 6 4 34 34 H 0.97005 * 120.00177 * 359.97438 * 9 8 6 35 35 H 1.07999 * 120.25743 * 0.04371 * 11 10 9 36 36 H 1.07994 * 120.66289 * 179.97438 * 12 11 10 37 37 H 1.08000 * 120.42113 * 180.02562 * 13 12 11 38 38 H 0.96997 * 119.99957 * 354.51109 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 7 3.4179 1.4590 0.0006 5 6 4.1476 1.5170 1.2696 6 6 4.0902 1.5121 -1.1663 7 8 5.2993 1.6074 -1.1658 8 6 3.3396 1.4520 -2.4717 9 7 4.2892 1.5266 -3.5848 10 6 3.8285 1.4899 -4.8939 11 6 2.4567 1.3811 -5.1399 12 6 1.9988 1.3442 -6.4476 13 6 2.9215 1.4161 -7.4765 14 6 4.2877 1.5245 -7.1647 15 6 5.2413 1.5994 -8.2049 16 1 4.9163 1.7193 -9.2279 17 6 6.6076 1.5181 -7.9094 18 7 7.4917 1.8929 -8.7966 19 14 7.1668 0.8815 -6.2447 20 1 7.2759 2.0156 -5.2921 21 1 6.1781 -0.1013 -5.7330 22 1 8.4909 0.2241 -6.3854 23 7 4.6914 1.5517 -5.8902 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.2475 2.5559 1.5842 30 1 3.6006 0.9584 2.0291 31 1 5.1376 1.0800 1.1398 32 1 2.6445 2.2895 -2.5301 33 1 2.7855 0.5151 -2.5294 34 1 5.2399 1.6023 -3.4072 35 1 1.7590 1.3266 -4.3174 36 1 0.9432 1.2601 -6.6593 37 1 2.5958 1.3902 -8.5059 38 1 7.2060 2.1518 -9.6867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329649617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:16 Heat of formation + Delta-G solvation = -22.938579 kcal Electronic energy + Delta-G solvation = -21564.897354 eV Core-core repulsion = 18215.432499 eV Total energy + Delta-G solvation = -3349.464855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29409 -40.40172 -38.73440 -36.78858 -35.36573 -34.63315 -32.93497 -31.63364 -31.50240 -29.27394 -27.18337 -26.39780 -23.90224 -23.63050 -22.32950 -21.53517 -20.35948 -19.37502 -18.16693 -17.68701 -17.29538 -17.08455 -16.32082 -16.18920 -15.94501 -15.90039 -15.47390 -15.13267 -14.99086 -14.30075 -14.20034 -14.14856 -13.69130 -13.61442 -13.57939 -13.23835 -13.08609 -12.78018 -12.51561 -12.39895 -12.06859 -11.73590 -11.56354 -11.32709 -11.06780 -10.82959 -10.29126 -10.22319 -9.71039 -9.24374 -8.61707 -6.75928 0.67633 0.81633 1.03297 1.17062 1.54664 1.66953 1.94692 2.18604 2.41951 2.67039 2.80535 3.68466 3.81378 4.02462 4.14908 4.18323 4.22974 4.30278 4.32167 4.45331 4.49902 4.57807 4.74677 4.78178 4.84294 4.85482 4.92386 4.98587 5.18627 5.31020 5.41965 5.48933 5.70988 5.83149 5.98576 6.09613 6.22043 6.52595 6.58447 6.72837 6.86601 7.76767 7.98044 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.004767 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.005298 B = 5872.168760 C = 6927.005356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.010 3.990 3 O -0.143 6.143 4 N -0.476 5.476 5 C 0.082 3.918 6 C 0.519 3.481 7 O -0.550 6.550 8 C 0.126 3.874 9 N -0.735 5.735 10 C 0.420 3.580 11 C -0.344 4.344 12 C -0.007 4.007 13 C -0.328 4.328 14 C 0.272 3.728 15 C -0.518 4.518 16 H 0.068 0.932 17 C 0.026 3.974 18 N -0.831 5.831 19 Si 1.179 2.821 20 H -0.293 1.293 21 H -0.287 1.287 22 H -0.325 1.325 23 N -0.641 5.641 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.397 0.603 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 -4.378 21.556 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 O -0.149 6.149 4 N -0.253 5.253 5 C -0.057 4.057 6 C 0.309 3.691 7 O -0.428 6.428 8 C -0.002 4.002 9 N -0.373 5.373 10 C 0.182 3.818 11 C -0.369 4.369 12 C -0.031 4.031 13 C -0.350 4.350 14 C 0.147 3.853 15 C -0.551 4.551 16 H 0.086 0.914 17 C -0.191 4.191 18 N -0.455 5.455 19 Si 1.012 2.988 20 H -0.221 1.221 21 H -0.215 1.215 22 H -0.258 1.258 23 N -0.370 5.370 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.233 0.767 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.124 0.876 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.019 -4.302 22.643 25.993 hybrid contribution -1.580 0.277 -1.754 2.377 sum -13.599 -4.025 20.889 25.249 Atomic orbital electron populations 1.21750 0.90253 1.04343 1.03756 1.23409 0.97415 0.83637 1.02242 1.90687 0.99779 1.27485 1.96902 1.49792 0.96390 1.72585 1.06549 1.22125 0.96641 1.04034 0.82877 1.20807 0.87125 0.75353 0.85840 1.90767 1.14717 1.51049 1.86299 1.21044 0.91599 1.05324 0.82192 1.44162 1.09486 1.82366 1.01261 1.18428 0.90038 0.89019 0.84287 1.21001 0.92809 1.25048 0.98031 1.21183 0.99256 0.91048 0.91627 1.21591 0.93495 1.20689 0.99245 1.18354 0.92549 0.86394 0.88005 1.20675 0.93269 1.46710 0.94448 0.91407 1.28240 0.93210 0.89877 1.07797 1.70634 1.38899 1.29611 1.06327 0.81584 0.70854 0.76831 0.69532 1.22114 1.21496 1.25767 1.66086 1.37675 1.32960 1.00249 0.91007 0.91481 0.88554 0.92278 0.90859 0.90759 0.87520 0.90059 0.87223 0.87448 0.76687 0.83932 0.83482 0.87597 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 10.28 71.98 0.74 -0.38 16 2 C 0.01 0.12 7.09 71.98 0.51 0.63 16 3 O -0.14 -2.39 10.48 -38.79 -0.41 -2.80 16 4 N -0.48 -9.60 3.36 -484.52 -1.63 -11.22 16 5 C 0.08 1.21 10.82 127.77 1.38 2.59 16 6 C 0.52 14.14 7.82 87.66 0.69 14.83 16 7 O -0.55 -19.05 15.25 -3.04 -0.05 -19.09 16 8 C 0.13 3.42 4.67 85.63 0.40 3.82 16 9 N -0.74 -28.36 5.69 -348.72 -1.99 -30.34 16 10 C 0.42 18.72 7.65 133.42 1.02 19.74 16 11 C -0.34 -13.01 9.34 22.73 0.21 -12.80 16 12 C -0.01 -0.28 10.15 22.39 0.23 -0.05 16 13 C -0.33 -15.50 9.83 22.87 0.22 -15.28 16 14 C 0.27 14.91 6.27 40.18 0.25 15.16 16 15 C -0.52 -30.36 9.51 23.46 0.22 -30.13 16 16 H 0.07 4.01 8.06 -2.91 -0.02 3.98 16 17 C 0.03 1.53 5.51 85.29 0.47 2.00 16 18 N -0.83 -48.57 13.65 21.84 0.30 -48.28 16 19 Si 1.18 62.03 25.92 68.60 1.78 63.81 16 20 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 21 H -0.29 -15.19 6.54 99.48 0.65 -14.54 16 22 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16 23 N -0.64 -33.98 5.04 -186.60 -0.94 -34.92 16 24 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.75 7.13 -2.39 -0.02 0.73 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.37 7.42 -2.39 -0.02 1.35 16 32 H 0.11 2.68 7.92 -2.39 -0.02 2.66 16 33 H 0.11 2.45 6.90 -2.39 -0.02 2.43 16 34 H 0.40 16.86 7.56 -92.70 -0.70 16.16 16 35 H 0.14 4.14 6.68 -2.91 -0.02 4.12 16 36 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.28 15.86 8.73 -92.71 -0.81 15.05 16 Total: -1.00 -71.93 324.45 3.70 -68.23 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.28 Total: 14.48 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 6.35 Total: 0.13 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -4.25 Total: -124.76 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.45 Total: -21.89 kcal Atomic # 14 Polarization: 62.03 SS G_CDS: 1.78 Total: 63.81 kcal Total: -71.93 3.70 -68.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329649617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.288 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds