Wall clock time and date at job start Tue Mar 31 2020 01:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34127 * 125.70349 * 2 1 4 4 C 1.38460 * 107.36748 * 179.71470 * 3 2 1 5 5 C 1.46667 * 126.47607 * 180.26569 * 4 3 2 6 6 O 1.21319 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00385 * 180.02562 * 5 4 3 8 8 N 1.46497 * 109.47528 * 180.02562 * 7 5 4 9 9 C 1.34780 * 119.99987 * 180.02562 * 8 7 5 10 10 O 1.21273 * 120.00046 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99724 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.46967 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47229 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.46990 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00436 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99616 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00553 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46897 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47157 * 119.99336 * 18 16 14 21 21 H 1.48495 * 109.47207 * 239.99609 * 18 16 14 22 22 C 1.41547 * 107.04909 * 0.26657 * 4 3 2 23 23 N 1.30380 * 107.98461 * 359.97438 * 22 4 3 24 24 H 1.08999 * 109.47089 * 89.99458 * 1 2 3 25 25 H 1.08999 * 109.47111 * 209.99906 * 1 2 3 26 26 H 1.09001 * 109.46792 * 329.99969 * 1 2 3 27 27 H 1.08002 * 126.31958 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46772 * 299.99975 * 7 5 4 29 29 H 1.08996 * 109.47034 * 59.99480 * 7 5 4 30 30 H 0.96998 * 119.99795 * 359.97438 * 8 7 5 31 31 H 1.09000 * 109.47367 * 299.99796 * 11 9 8 32 32 H 1.09004 * 109.47211 * 60.00142 * 11 9 8 33 33 H 1.08999 * 109.47431 * 299.99806 * 12 11 9 34 34 H 1.08995 * 109.47511 * 60.00160 * 12 11 9 35 35 H 1.09000 * 109.47082 * 299.99905 * 13 12 11 36 36 H 1.08996 * 109.47380 * 59.99812 * 13 12 11 37 37 H 0.96995 * 120.00199 * 180.02562 * 17 16 14 38 38 H 1.07998 * 126.00731 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2478 1.0892 0.0000 4 6 3.5621 0.6536 0.0066 5 6 4.7607 1.4988 0.0144 6 8 4.6510 2.7070 0.0152 7 6 6.1286 0.8665 0.0204 8 7 7.1514 1.9153 0.0284 9 6 8.4575 1.5828 0.0342 10 8 8.7861 0.4154 0.0333 11 6 9.5096 2.6616 0.0418 12 6 10.8983 2.0196 0.0480 13 6 11.9666 3.1150 0.0563 14 6 13.3344 2.4826 0.0618 15 1 13.4322 1.4070 0.0600 16 6 14.4612 3.2772 0.0702 17 7 14.3423 4.5869 0.0729 18 14 16.1569 2.4933 0.0777 19 1 16.0187 1.0147 0.0738 20 1 16.9066 2.9241 -1.1295 21 1 16.8931 2.9180 1.2954 22 6 3.5303 -0.7615 0.0043 23 7 2.2815 -1.1361 -0.0026 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9144 2.1165 -0.0004 28 1 6.2381 0.2460 0.9099 29 1 6.2474 0.2493 -0.8700 30 1 6.8886 2.8490 0.0287 31 1 9.3999 3.2824 -0.8474 32 1 9.3910 3.2786 0.9325 33 1 11.0079 1.3992 0.9374 34 1 11.0173 1.4024 -0.8425 35 1 11.8573 3.7358 -0.8329 36 1 11.8475 3.7319 0.9470 37 1 15.1350 5.1459 0.0785 38 1 4.3895 -1.4159 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333997116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:52 Heat of formation + Delta-G solvation = -11.690053 kcal Electronic energy + Delta-G solvation = -20022.346898 eV Core-core repulsion = 16673.369815 eV Total energy + Delta-G solvation = -3348.977082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82865 -39.85100 -38.74111 -34.49181 -34.06817 -33.96448 -31.99576 -31.04934 -29.32138 -27.85164 -26.58125 -23.84481 -22.83780 -21.49255 -20.54644 -20.11612 -19.62549 -17.78621 -16.83472 -16.27146 -16.17328 -16.00990 -15.73713 -15.35846 -14.82818 -14.77069 -14.45799 -14.27405 -13.56085 -13.47692 -13.21812 -13.15499 -13.03184 -12.43170 -12.22174 -11.75803 -11.46048 -11.26979 -10.77970 -10.54456 -10.48135 -10.13745 -10.11702 -9.68016 -9.62186 -9.23858 -9.22432 -9.02929 -8.95928 -8.27890 -5.93313 -3.94468 0.81988 1.56059 1.82099 2.72366 2.96363 3.16492 3.36881 3.44019 3.49894 3.71983 4.10815 4.20650 4.50232 4.53211 4.54895 4.77689 4.79157 4.95844 5.13510 5.21932 5.32225 5.42720 5.44040 5.79824 5.80266 5.92501 6.23066 6.31610 6.44968 6.79324 6.99358 7.00199 7.22237 7.24364 7.64385 7.76887 7.89763 8.07928 8.47551 8.52120 9.13056 9.69273 11.18215 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.064782 B = 0.002210 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.112966 B =12668.914544 C =13064.667680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.362 5.362 3 C 0.132 3.868 4 C -0.324 4.324 5 C 0.429 3.571 6 O -0.467 6.467 7 C 0.078 3.922 8 N -0.735 5.735 9 C 0.516 3.484 10 O -0.539 6.539 11 C -0.138 4.138 12 C -0.095 4.095 13 C 0.019 3.981 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.097 3.903 23 N -0.299 5.299 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.189 0.811 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.408 0.592 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.945 -6.664 -0.099 31.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.140 5.140 3 C -0.020 4.020 4 C -0.337 4.337 5 C 0.307 3.693 6 O -0.343 6.343 7 C -0.047 4.047 8 N -0.391 5.391 9 C 0.304 3.696 10 O -0.415 6.415 11 C -0.178 4.178 12 C -0.133 4.133 13 C -0.018 4.018 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.091 4.091 23 N -0.119 5.119 24 H 0.100 0.900 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.206 0.794 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.245 0.755 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -31.647 -7.742 -0.102 32.580 hybrid contribution 1.208 0.745 -0.008 1.419 sum -30.439 -6.997 -0.109 31.233 Atomic orbital electron populations 1.22055 0.73262 1.05220 1.04155 1.48502 1.07499 1.03971 1.54019 1.23256 0.90413 0.93879 0.94422 1.20761 0.93973 0.94459 1.24519 1.21472 0.89118 0.88055 0.70614 1.90536 1.88985 1.16308 1.38496 1.21431 0.86088 0.92355 1.04815 1.45961 1.05447 1.10247 1.77486 1.21279 0.82604 0.91256 0.74474 1.90670 1.81552 1.20453 1.48830 1.21842 0.95071 0.96892 1.03967 1.21448 0.90740 0.99393 1.01698 1.19148 0.92261 0.93229 0.97188 1.21319 0.91102 0.93146 1.49881 0.92503 1.25031 0.99272 0.94838 0.95474 1.69974 1.29111 1.03292 1.51363 0.86539 0.84404 0.79631 0.77472 1.19686 1.21082 1.21087 1.24312 0.95362 0.93890 0.95557 1.77221 1.02159 1.07571 1.24902 0.89975 0.88627 0.88851 0.79368 0.88081 0.88072 0.75464 0.89221 0.89225 0.92679 0.92674 0.96560 0.96557 0.93159 0.78530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.21 11.44 59.85 0.68 0.90 16 2 N -0.36 -2.41 3.97 -67.51 -0.27 -2.68 16 3 C 0.13 0.91 11.30 -16.47 -0.19 0.72 16 4 C -0.32 -2.73 6.11 -105.15 -0.64 -3.37 16 5 C 0.43 4.21 7.20 -30.91 -0.22 3.99 16 6 O -0.47 -5.65 16.21 5.52 0.09 -5.56 16 7 C 0.08 0.81 5.64 -5.20 -0.03 0.78 16 8 N -0.73 -9.39 5.53 -61.48 -0.34 -9.73 16 9 C 0.52 8.44 7.83 -10.99 -0.09 8.35 16 10 O -0.54 -10.61 15.98 5.56 0.09 -10.52 16 11 C -0.14 -2.35 5.70 -27.89 -0.16 -2.51 16 12 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 18 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.10 0.76 11.55 -16.91 -0.20 0.57 16 23 N -0.30 -2.66 12.49 30.91 0.39 -2.28 16 24 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 25 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 27 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.41 4.77 7.44 -40.82 -0.30 4.47 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.20 1.04 8.04 -52.49 -0.42 0.62 16 LS Contribution 338.13 15.07 5.10 5.10 Total: -1.00 -37.30 338.13 -6.07 -43.37 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.34 Total: -1.91 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.50 Total: -6.35 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.51 Total: -41.35 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.30 -6.07 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333997116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.681 kcal (2) G-P(sol) polarization free energy of solvation -37.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds