Wall clock time and date at job start Tue Mar 31 2020 01:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34127 * 125.70349 * 2 1 4 4 C 1.38460 * 107.36748 * 179.71470 * 3 2 1 5 5 C 1.46667 * 126.47607 * 180.26569 * 4 3 2 6 6 O 1.21319 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00385 * 180.02562 * 5 4 3 8 8 N 1.46497 * 109.47528 * 180.02562 * 7 5 4 9 9 C 1.34780 * 119.99987 * 180.02562 * 8 7 5 10 10 O 1.21273 * 120.00046 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.99724 * 179.97438 * 9 8 7 12 12 C 1.52996 * 109.46967 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47229 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.46990 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00436 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99616 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00553 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46897 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47157 * 119.99336 * 18 16 14 21 21 H 1.48495 * 109.47207 * 239.99609 * 18 16 14 22 22 C 1.41547 * 107.04909 * 0.26657 * 4 3 2 23 23 N 1.30380 * 107.98461 * 359.97438 * 22 4 3 24 24 H 1.08999 * 109.47089 * 89.99458 * 1 2 3 25 25 H 1.08999 * 109.47111 * 209.99906 * 1 2 3 26 26 H 1.09001 * 109.46792 * 329.99969 * 1 2 3 27 27 H 1.08002 * 126.31958 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.46772 * 299.99975 * 7 5 4 29 29 H 1.08996 * 109.47034 * 59.99480 * 7 5 4 30 30 H 0.96998 * 119.99795 * 359.97438 * 8 7 5 31 31 H 1.09000 * 109.47367 * 299.99796 * 11 9 8 32 32 H 1.09004 * 109.47211 * 60.00142 * 11 9 8 33 33 H 1.08999 * 109.47431 * 299.99806 * 12 11 9 34 34 H 1.08995 * 109.47511 * 60.00160 * 12 11 9 35 35 H 1.09000 * 109.47082 * 299.99905 * 13 12 11 36 36 H 1.08996 * 109.47380 * 59.99812 * 13 12 11 37 37 H 0.96995 * 120.00199 * 180.02562 * 17 16 14 38 38 H 1.07998 * 126.00731 * 180.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2478 1.0892 0.0000 4 6 3.5621 0.6536 0.0066 5 6 4.7607 1.4988 0.0144 6 8 4.6510 2.7070 0.0152 7 6 6.1286 0.8665 0.0204 8 7 7.1514 1.9153 0.0284 9 6 8.4575 1.5828 0.0342 10 8 8.7861 0.4154 0.0333 11 6 9.5096 2.6616 0.0418 12 6 10.8983 2.0196 0.0480 13 6 11.9666 3.1150 0.0563 14 6 13.3344 2.4826 0.0618 15 1 13.4322 1.4070 0.0600 16 6 14.4612 3.2772 0.0702 17 7 14.3423 4.5869 0.0729 18 14 16.1569 2.4933 0.0777 19 1 16.0187 1.0147 0.0738 20 1 16.9066 2.9241 -1.1295 21 1 16.8931 2.9180 1.2954 22 6 3.5303 -0.7615 0.0043 23 7 2.2815 -1.1361 -0.0026 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.9144 2.1165 -0.0004 28 1 6.2381 0.2460 0.9099 29 1 6.2474 0.2493 -0.8700 30 1 6.8886 2.8490 0.0287 31 1 9.3999 3.2824 -0.8474 32 1 9.3910 3.2786 0.9325 33 1 11.0079 1.3992 0.9374 34 1 11.0173 1.4024 -0.8425 35 1 11.8573 3.7358 -0.8329 36 1 11.8475 3.7319 0.9470 37 1 15.1350 5.1459 0.0785 38 1 4.3895 -1.4159 0.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333997116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:51 Heat of formation + Delta-G solvation = -38.125921 kcal Electronic energy + Delta-G solvation = -20023.493243 eV Core-core repulsion = 16673.369815 eV Total energy + Delta-G solvation = -3350.123428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38030 -40.93782 -39.76216 -36.16091 -35.44066 -34.45085 -33.99234 -31.70585 -30.45778 -29.10138 -27.42833 -25.59013 -23.67984 -22.29852 -21.88091 -21.31067 -20.57639 -18.77843 -18.27536 -17.58759 -17.16606 -17.05188 -16.59626 -16.47134 -16.02358 -15.91718 -15.43374 -15.27959 -14.89163 -14.48924 -14.16524 -13.76784 -13.72101 -13.71281 -13.48327 -13.43598 -13.02583 -12.59762 -12.49106 -12.35621 -12.03092 -11.52136 -11.44811 -11.23229 -10.95933 -10.72657 -10.64817 -10.52727 -10.17612 -9.77109 -8.18161 -6.28029 0.20647 0.97692 1.41134 1.41196 1.43416 1.55308 1.65974 2.08228 2.11787 2.43710 2.99282 3.14712 3.66831 3.78250 3.92720 4.10177 4.22525 4.27285 4.29387 4.40564 4.42764 4.49180 4.55872 4.69456 4.73019 4.85355 5.00801 5.14489 5.22520 5.34617 5.43052 5.57594 5.78691 5.81790 5.89787 6.29648 6.40574 6.50534 6.55955 6.88008 7.24274 7.40544 8.93593 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.064782 B = 0.002210 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.112966 B =12668.914544 C =13064.667680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.360 5.360 3 C 0.140 3.860 4 C -0.347 4.347 5 C 0.441 3.559 6 O -0.495 6.495 7 C 0.074 3.926 8 N -0.721 5.721 9 C 0.521 3.479 10 O -0.576 6.576 11 C -0.132 4.132 12 C -0.082 4.082 13 C 0.023 3.977 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.000 4.000 17 N -0.930 5.930 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C 0.097 3.903 23 N -0.331 5.331 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.121 0.879 27 H 0.214 0.786 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.264 0.736 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.149 -6.930 -0.091 32.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.137 5.137 3 C -0.013 4.013 4 C -0.360 4.360 5 C 0.322 3.678 6 O -0.373 6.373 7 C -0.050 4.050 8 N -0.376 5.376 9 C 0.309 3.691 10 O -0.456 6.456 11 C -0.172 4.172 12 C -0.120 4.120 13 C -0.014 4.014 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.091 4.091 23 N -0.151 5.151 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.139 0.861 27 H 0.230 0.770 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -32.913 -8.012 -0.094 33.874 hybrid contribution 1.454 0.844 -0.012 1.681 sum -31.459 -7.168 -0.106 32.266 Atomic orbital electron populations 1.22433 0.70941 1.06737 1.05456 1.48857 1.08823 1.03314 1.52737 1.23667 0.90015 0.94922 0.92731 1.20711 0.94101 0.94564 1.26603 1.21386 0.89146 0.87671 0.69643 1.90530 1.89169 1.17226 1.40349 1.21642 0.85745 0.91853 1.05810 1.45782 1.04751 1.11358 1.75677 1.20951 0.83542 0.90202 0.74359 1.90661 1.82262 1.21624 1.51040 1.21684 0.92638 0.97182 1.05691 1.21162 0.92515 0.97768 1.00539 1.19047 0.92901 0.93915 0.95519 1.21732 0.92894 0.93257 1.50428 0.92876 1.25939 1.03615 0.95392 0.94781 1.70080 1.30578 1.04638 1.51761 0.85424 0.79033 0.78814 0.77930 1.19094 1.20137 1.20147 1.24631 0.95738 0.94023 0.94711 1.77174 1.02789 1.09092 1.26058 0.88747 0.88418 0.86114 0.76973 0.87112 0.87113 0.74617 0.87545 0.87549 0.93814 0.93810 0.98123 0.98117 0.92719 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.44 127.77 1.46 1.66 16 2 N -0.36 -4.14 3.97 -367.51 -1.46 -5.60 16 3 C 0.14 1.65 11.30 84.40 0.95 2.60 16 4 C -0.35 -5.36 6.11 -20.21 -0.12 -5.49 16 5 C 0.44 8.10 7.20 27.89 0.20 8.30 16 6 O -0.49 -11.34 16.21 -3.15 -0.05 -11.39 16 7 C 0.07 1.43 5.64 85.63 0.48 1.91 16 8 N -0.72 -17.47 5.53 -466.81 -2.58 -20.05 16 9 C 0.52 16.63 7.83 87.66 0.69 17.32 16 10 O -0.58 -22.52 15.98 -3.01 -0.05 -22.57 16 11 C -0.13 -4.43 5.70 29.85 0.17 -4.26 16 12 C -0.08 -3.63 4.44 30.59 0.14 -3.50 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.55 -32.40 9.11 25.60 0.23 -32.16 16 15 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 16 C 0.00 0.03 5.46 84.65 0.46 0.49 16 17 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 18 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 C 0.10 1.42 11.55 85.72 0.99 2.41 16 23 N -0.33 -5.53 12.49 -56.14 -0.70 -6.23 16 24 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.42 9.09 7.44 -92.71 -0.69 8.40 16 31 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 32 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 33 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 34 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.21 2.03 8.04 -2.91 -0.02 2.01 16 Total: -1.00 -80.18 338.13 3.65 -76.53 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.38 Total: 7.83 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 5.80 Total: -9.32 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -4.46 Total: -88.76 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.10 Total: -33.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -80.18 3.65 -76.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333997116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.402 kcal (2) G-P(sol) polarization free energy of solvation -80.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds