Wall clock time and date at job start Tue Mar 31 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47424 * 125.64879 * 0.30383 * 4 2 1 6 6 C 1.54912 * 104.83227 * 204.08629 * 5 4 2 7 7 C 1.55149 * 101.58276 * 322.99076 * 6 5 4 8 8 C 1.47020 * 125.64991 * 179.97438 * 4 2 1 9 9 H 1.09000 * 109.88341 * 59.55883 * 8 4 2 10 10 C 1.50702 * 109.88344 * 298.40005 * 8 4 2 11 11 N 1.29951 * 126.28522 * 316.13581 * 10 8 4 12 12 O 1.21304 * 110.24817 * 179.84342 * 11 10 8 13 13 C 1.33640 * 109.81389 * 0.42673 * 12 11 10 14 14 C 1.50697 * 126.55119 * 179.75386 * 13 12 11 15 15 C 1.52999 * 109.47371 * 269.97769 * 14 13 12 16 16 C 1.50702 * 109.46869 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00312 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99480 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99576 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47275 * 59.99767 * 20 18 16 22 22 H 1.48507 * 109.46807 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46909 * 299.99474 * 20 18 16 24 24 N 1.31132 * 106.89549 * 359.74041 * 13 12 11 25 25 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 27 27 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 28 28 H 1.08993 * 110.36793 * 322.92770 * 5 4 2 29 29 H 1.08999 * 110.36611 * 85.25030 * 5 4 2 30 30 H 1.09006 * 110.99759 * 81.06710 * 6 5 4 31 31 H 1.08998 * 111.00623 * 204.91432 * 6 5 4 32 32 H 1.09001 * 110.71964 * 153.85922 * 7 6 5 33 33 H 1.08994 * 110.72431 * 276.95819 * 7 6 5 34 34 H 1.08996 * 109.47315 * 29.98348 * 14 13 12 35 35 H 1.09001 * 109.46635 * 149.97960 * 14 13 12 36 36 H 1.08994 * 109.47350 * 300.00001 * 15 14 13 37 37 H 1.09001 * 109.47085 * 60.00466 * 15 14 13 38 38 H 0.96998 * 119.99650 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5730 -2.5103 0.0060 6 6 2.6522 -3.4339 0.6242 7 6 3.9548 -2.8232 0.0432 8 6 3.6439 -1.3120 0.0059 9 1 4.0643 -0.8271 0.8870 10 6 4.2199 -0.6981 -1.2441 11 7 3.7560 -0.8316 -2.4506 12 8 4.4422 -0.2112 -3.2353 13 6 5.4446 0.3878 -2.5854 14 6 6.5214 1.2484 -3.1942 15 6 7.7100 0.3717 -3.5938 16 6 8.7871 1.2326 -4.2020 17 1 8.6386 2.2983 -4.2946 18 6 9.9617 0.6594 -4.6410 19 7 10.1423 -0.6385 -4.5286 20 14 11.2971 1.7265 -5.3943 21 1 11.7406 2.7384 -4.4021 22 1 12.4507 0.8755 -5.7822 23 1 10.7619 2.4138 -6.5969 24 7 5.3118 0.0838 -1.3168 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 0.6710 -2.5183 0.6178 29 1 1.3442 -2.8233 -1.0127 30 1 2.6428 -3.3715 1.7124 31 1 2.5217 -4.4639 0.2923 32 1 4.8022 -3.0291 0.6971 33 1 4.1437 -3.2018 -0.9613 34 1 6.1283 1.7520 -4.0773 35 1 6.8468 1.9920 -2.4666 36 1 8.1032 -0.1318 -2.7107 37 1 7.3846 -0.3718 -4.3213 38 1 10.9688 -1.0416 -4.8372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335530560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:00 Heat of formation + Delta-G solvation = 22.035459 kcal Electronic energy + Delta-G solvation = -21615.030707 eV Core-core repulsion = 18267.516073 eV Total energy + Delta-G solvation = -3347.514634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.04409 -40.27859 -37.69051 -35.40776 -34.34556 -32.55982 -32.20324 -30.51483 -29.75248 -28.84334 -25.79979 -24.47790 -23.15876 -22.37483 -21.51206 -20.74490 -18.99477 -17.55388 -17.36680 -17.18512 -16.45379 -16.19246 -15.50194 -14.80433 -14.53298 -14.10707 -14.01033 -13.81831 -13.32877 -13.14031 -12.88379 -12.63436 -12.41988 -12.28654 -12.12137 -11.91629 -11.58744 -11.52623 -11.14562 -10.96590 -10.95039 -10.73181 -10.52250 -10.11644 -10.06679 -9.92621 -9.31527 -9.14594 -8.98120 -8.42612 -6.07406 -4.11806 1.65903 2.41097 2.54395 2.91301 3.32074 3.36176 3.37839 3.44327 3.86979 4.13530 4.24029 4.41438 4.54410 4.59428 4.67860 4.96570 4.98535 5.06991 5.07810 5.21919 5.29144 5.44553 5.53583 5.54764 5.60929 5.67359 5.89337 5.98253 6.04807 6.19667 6.30395 6.49990 6.67470 7.26878 7.51432 7.59349 7.88433 7.97861 8.24362 8.66279 8.93168 9.52831 11.03893 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.003554 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.065221 B = 7877.338445 C = 8379.929546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.524 3.476 3 O -0.533 6.533 4 N -0.613 5.613 5 C 0.100 3.900 6 C -0.130 4.130 7 C -0.123 4.123 8 C 0.233 3.767 9 H 0.106 0.894 10 C 0.162 3.838 11 N -0.390 5.390 12 O 0.067 5.933 13 C 0.215 3.785 14 C -0.028 4.028 15 C 0.029 3.971 16 C -0.526 4.526 17 H 0.061 0.939 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 N -0.487 5.487 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.026 0.974 37 H 0.023 0.977 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 -6.230 10.364 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.314 3.686 3 O -0.408 6.408 4 N -0.349 5.349 5 C -0.023 4.023 6 C -0.168 4.168 7 C -0.161 4.161 8 C 0.127 3.873 9 H 0.123 0.877 10 C -0.113 4.113 11 N -0.101 5.101 12 O 0.010 5.990 13 C -0.004 4.004 14 C -0.067 4.067 15 C -0.009 4.009 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.221 5.221 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.198 -6.170 10.575 22.770 hybrid contribution 0.885 0.516 -0.618 1.197 sum -18.312 -5.654 9.958 21.598 Atomic orbital electron populations 1.21885 0.91049 1.05493 1.04127 1.20595 0.90473 0.82028 0.75528 1.90786 1.70661 1.30549 1.48824 1.48590 1.05758 1.06467 1.74130 1.22391 0.96864 0.81535 1.01500 1.22796 0.93619 0.99314 1.01051 1.22715 0.98887 0.91156 1.03389 1.19612 0.80382 0.95908 0.91394 0.87663 1.25705 0.92549 0.98180 0.94851 1.74437 1.17466 1.16539 1.01693 1.85251 1.31159 1.47058 1.35509 1.29574 0.90534 0.94050 0.86214 1.20745 0.89862 0.95954 1.00170 1.19145 0.89725 0.94713 0.97332 1.21049 1.00493 0.94143 1.40701 0.92072 1.25007 0.98437 0.95019 0.95756 1.69960 1.26359 1.09973 1.46775 0.86562 0.81031 0.80188 0.79682 1.20077 1.21267 1.20078 1.71866 1.16886 1.15843 1.17490 0.88897 0.89367 0.89382 0.89996 0.90836 0.90021 0.89158 0.88699 0.89907 0.89165 0.88234 0.95518 0.95842 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 9.33 36.01 0.34 -1.04 16 2 C 0.52 7.19 7.74 -10.98 -0.09 7.10 16 3 O -0.53 -10.08 16.93 5.55 0.09 -9.98 16 4 N -0.61 -7.47 3.05 -164.32 -0.50 -7.98 16 5 C 0.10 0.76 6.69 -2.53 -0.02 0.75 16 6 C -0.13 -0.87 7.09 -24.59 -0.17 -1.04 16 7 C -0.12 -1.27 6.47 -24.89 -0.16 -1.43 16 8 C 0.23 3.29 3.40 -68.10 -0.23 3.06 16 9 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 10 C 0.16 3.01 6.17 -156.37 -0.96 2.04 16 11 N -0.39 -7.56 12.15 30.90 0.38 -7.19 16 12 O 0.07 1.35 11.31 18.11 0.20 1.56 16 13 C 0.22 4.47 7.77 -13.06 -0.10 4.37 16 14 C -0.03 -0.58 5.78 -27.89 -0.16 -0.74 16 15 C 0.03 0.74 4.96 -27.88 -0.14 0.60 16 16 C -0.53 -14.34 9.11 -34.44 -0.31 -14.66 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 N -0.49 -10.22 11.55 -9.86 -0.11 -10.34 16 25 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.48 7.84 -51.93 -0.41 0.07 16 28 H 0.08 0.40 7.47 -51.93 -0.39 0.01 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.98 7.84 -51.93 -0.41 0.58 16 34 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 35 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -34.89 327.83 -6.79 -41.67 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -5.39 Total: -3.81 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.11 Total: 0.59 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.50 Total: -51.12 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.30 Total: -8.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.89 -6.79 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335530560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.710 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds