Wall clock time and date at job start Tue Mar 31 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.47424 * 125.64879 * 0.30383 * 4 2 1 6 6 C 1.54912 * 104.83227 * 204.08629 * 5 4 2 7 7 C 1.55149 * 101.58276 * 322.99076 * 6 5 4 8 8 C 1.47020 * 125.64991 * 179.97438 * 4 2 1 9 9 H 1.09000 * 109.88341 * 59.55883 * 8 4 2 10 10 C 1.50702 * 109.88344 * 298.40005 * 8 4 2 11 11 N 1.29951 * 126.28522 * 316.13581 * 10 8 4 12 12 O 1.21304 * 110.24817 * 179.84342 * 11 10 8 13 13 C 1.33640 * 109.81389 * 0.42673 * 12 11 10 14 14 C 1.50697 * 126.55119 * 179.75386 * 13 12 11 15 15 C 1.52999 * 109.47371 * 269.97769 * 14 13 12 16 16 C 1.50702 * 109.46869 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00312 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99480 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00062 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99576 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47275 * 59.99767 * 20 18 16 22 22 H 1.48507 * 109.46807 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46909 * 299.99474 * 20 18 16 24 24 N 1.31132 * 106.89549 * 359.74041 * 13 12 11 25 25 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 27 27 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 28 28 H 1.08993 * 110.36793 * 322.92770 * 5 4 2 29 29 H 1.08999 * 110.36611 * 85.25030 * 5 4 2 30 30 H 1.09006 * 110.99759 * 81.06710 * 6 5 4 31 31 H 1.08998 * 111.00623 * 204.91432 * 6 5 4 32 32 H 1.09001 * 110.71964 * 153.85922 * 7 6 5 33 33 H 1.08994 * 110.72431 * 276.95819 * 7 6 5 34 34 H 1.08996 * 109.47315 * 29.98348 * 14 13 12 35 35 H 1.09001 * 109.46635 * 149.97960 * 14 13 12 36 36 H 1.08994 * 109.47350 * 300.00001 * 15 14 13 37 37 H 1.09001 * 109.47085 * 60.00466 * 15 14 13 38 38 H 0.96998 * 119.99650 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.5730 -2.5103 0.0060 6 6 2.6522 -3.4339 0.6242 7 6 3.9548 -2.8232 0.0432 8 6 3.6439 -1.3120 0.0059 9 1 4.0643 -0.8271 0.8870 10 6 4.2199 -0.6981 -1.2441 11 7 3.7560 -0.8316 -2.4506 12 8 4.4422 -0.2112 -3.2353 13 6 5.4446 0.3878 -2.5854 14 6 6.5214 1.2484 -3.1942 15 6 7.7100 0.3717 -3.5938 16 6 8.7871 1.2326 -4.2020 17 1 8.6386 2.2983 -4.2946 18 6 9.9617 0.6594 -4.6410 19 7 10.1423 -0.6385 -4.5286 20 14 11.2971 1.7265 -5.3943 21 1 11.7406 2.7384 -4.4021 22 1 12.4507 0.8755 -5.7822 23 1 10.7619 2.4138 -6.5969 24 7 5.3118 0.0838 -1.3168 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 0.6710 -2.5183 0.6178 29 1 1.3442 -2.8233 -1.0127 30 1 2.6428 -3.3715 1.7124 31 1 2.5217 -4.4639 0.2923 32 1 4.8022 -3.0291 0.6971 33 1 4.1437 -3.2018 -0.9613 34 1 6.1283 1.7520 -4.0773 35 1 6.8468 1.9920 -2.4666 36 1 8.1032 -0.1318 -2.7107 37 1 7.3846 -0.3718 -4.3213 38 1 10.9688 -1.0416 -4.8372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335530560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:00 Heat of formation + Delta-G solvation = -3.341145 kcal Electronic energy + Delta-G solvation = -21616.131120 eV Core-core repulsion = 18267.516073 eV Total energy + Delta-G solvation = -3348.615046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -46.60970 -41.25152 -38.72850 -37.02101 -36.12824 -34.38141 -33.17296 -32.09250 -30.81580 -29.70702 -27.77378 -25.56824 -24.72811 -23.79689 -22.73726 -21.99229 -20.13430 -19.15902 -18.76715 -18.42485 -18.12191 -17.35698 -16.54920 -16.50431 -15.79758 -15.76119 -15.19585 -14.86463 -14.63788 -14.35523 -13.98993 -13.76704 -13.52476 -13.43734 -13.33125 -13.23147 -13.06704 -12.79699 -12.66977 -12.34027 -12.21047 -12.16528 -11.97858 -11.88285 -11.78556 -11.39203 -11.13564 -10.80146 -10.57263 -9.98112 -8.21655 -6.34050 0.06113 1.09612 1.44783 1.45117 1.48228 1.55731 1.80292 1.85409 2.42716 2.59148 2.99792 3.13309 3.36567 3.58909 3.74954 3.79282 4.08161 4.18333 4.35415 4.39708 4.46760 4.48057 4.52571 4.59538 4.68760 4.75933 4.79445 4.87407 4.91580 4.93527 5.04250 5.13668 5.24108 5.39344 5.49324 5.75235 6.11223 6.36755 6.80352 6.98519 7.07294 7.35865 8.90680 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033086 B = 0.003554 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.065221 B = 7877.338445 C = 8379.929546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.510 3.490 3 O -0.600 6.600 4 N -0.611 5.611 5 C 0.093 3.907 6 C -0.114 4.114 7 C -0.121 4.121 8 C 0.221 3.779 9 H 0.095 0.905 10 C 0.166 3.834 11 N -0.396 5.396 12 O 0.055 5.945 13 C 0.208 3.792 14 C -0.014 4.014 15 C 0.038 3.962 16 C -0.543 4.543 17 H 0.076 0.924 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.263 1.263 24 N -0.511 5.511 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.109 0.891 36 H -0.005 1.005 37 H -0.001 1.001 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 -6.692 10.990 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.302 3.698 3 O -0.480 6.480 4 N -0.346 5.346 5 C -0.028 4.028 6 C -0.152 4.152 7 C -0.160 4.160 8 C 0.114 3.886 9 H 0.113 0.887 10 C -0.109 4.109 11 N -0.109 5.109 12 O 0.002 5.998 13 C -0.011 4.011 14 C -0.053 4.053 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.094 0.906 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.795 3.205 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.188 1.188 24 N -0.246 5.246 25 H 0.107 0.893 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.013 0.987 37 H 0.018 0.982 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.765 -6.664 11.187 24.510 hybrid contribution 1.320 0.591 -0.760 1.634 sum -19.445 -6.072 10.427 22.885 Atomic orbital electron populations 1.21914 0.86589 1.06175 1.06685 1.21704 0.92625 0.81373 0.74073 1.90750 1.72298 1.32961 1.52018 1.48815 1.04894 1.08078 1.72802 1.22761 0.98397 0.79042 1.02585 1.22848 0.90359 1.00014 1.01975 1.22739 1.01659 0.88551 1.03005 1.19944 0.81974 0.97889 0.88761 0.88696 1.26561 0.91448 0.96814 0.96077 1.74398 1.17634 1.16970 1.01945 1.85224 1.31275 1.47373 1.35904 1.29535 0.90844 0.94303 0.86455 1.20526 0.88248 0.95125 1.01394 1.18915 0.91293 0.94623 0.95199 1.21522 1.01029 0.95088 1.40398 0.90574 1.26000 1.01146 0.96302 0.96213 1.70106 1.27185 1.12015 1.48015 0.85404 0.77627 0.78304 0.79142 1.19058 1.21194 1.18761 1.71871 1.18178 1.16748 1.17775 0.89320 0.87501 0.85689 0.86014 0.90840 0.88105 0.86645 0.87733 0.91731 0.86835 0.87301 0.98697 0.98243 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.33 71.24 0.66 -1.48 16 2 C 0.51 13.59 7.74 87.66 0.68 14.27 16 3 O -0.60 -23.35 16.93 -3.04 -0.05 -23.40 16 4 N -0.61 -14.08 3.05 -792.16 -2.42 -16.50 16 5 C 0.09 1.11 6.69 86.86 0.58 1.69 16 6 C -0.11 -1.13 7.09 31.98 0.23 -0.90 16 7 C -0.12 -2.38 6.47 31.78 0.21 -2.17 16 8 C 0.22 6.24 3.40 44.60 0.15 6.39 16 9 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 10 C 0.17 6.34 6.17 138.46 0.85 7.19 16 11 N -0.40 -15.71 12.15 -60.30 -0.73 -16.44 16 12 O 0.06 2.31 11.31 74.86 0.85 3.16 16 13 C 0.21 8.92 7.77 88.38 0.69 9.61 16 14 C -0.01 -0.59 5.78 29.85 0.17 -0.42 16 15 C 0.04 1.99 4.96 29.85 0.15 2.14 16 16 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 17 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 18 C 0.00 0.09 5.46 84.66 0.46 0.56 16 19 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 20 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 N -0.51 -22.26 11.55 -303.18 -3.50 -25.77 16 25 H 0.09 1.34 8.12 -2.39 -0.02 1.32 16 26 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.12 0.81 7.84 -2.39 -0.02 0.79 16 28 H 0.12 0.54 7.47 -2.39 -0.02 0.52 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.52 7.84 -2.39 -0.02 1.50 16 34 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 35 H 0.11 4.34 8.14 -2.39 -0.02 4.33 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -79.73 327.83 2.58 -77.15 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.06 Total: 5.24 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.07 Total: 7.30 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -6.37 Total: -114.77 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.79 Total: -20.24 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -79.73 2.58 -77.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335530560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.810 kcal (2) G-P(sol) polarization free energy of solvation -79.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds