Wall clock time and date at job start Tue Mar 31 2020 01:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00156 * 2 1 4 4 C 1.50694 * 109.47181 * 66.05120 * 3 2 1 5 5 O 1.21278 * 120.00074 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00007 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99914 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47023 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99687 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99700 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99682 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00305 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47109 * 90.00277 * 12 10 8 14 14 H 1.48507 * 109.47224 * 210.00568 * 12 10 8 15 15 H 1.48502 * 109.47174 * 329.99960 * 12 10 8 16 16 C 1.46902 * 110.99790 * 236.04500 * 2 1 3 17 17 C 1.50691 * 109.47243 * 293.95487 * 16 2 1 18 18 C 1.38085 * 119.58646 * 95.02210 * 17 16 2 19 19 C 1.38784 * 119.29420 * 179.97438 * 18 17 16 20 20 C 1.38424 * 118.48103 * 359.74525 * 19 18 17 21 21 C 1.38879 * 119.11183 * 0.49490 * 20 19 18 22 22 O 1.35677 * 119.68343 * 179.77049 * 21 20 19 23 23 N 1.31942 * 119.58389 * 274.99779 * 17 16 2 24 24 H 1.08997 * 109.47141 * 183.95933 * 1 2 3 25 25 H 1.09007 * 109.46532 * 303.95041 * 1 2 3 26 26 H 1.08999 * 109.47199 * 63.95263 * 1 2 3 27 27 H 1.09004 * 109.46916 * 186.05127 * 3 2 1 28 28 H 1.08996 * 109.46859 * 306.04389 * 3 2 1 29 29 H 0.97000 * 119.99797 * 359.97438 * 6 4 3 30 30 H 1.08993 * 109.47112 * 299.99794 * 7 6 4 31 31 H 1.08997 * 109.46869 * 60.00118 * 7 6 4 32 32 H 0.96993 * 120.00196 * 180.02562 * 11 10 8 33 33 H 1.09000 * 109.47357 * 173.95016 * 16 2 1 34 34 H 1.09001 * 109.46766 * 53.95397 * 16 2 1 35 35 H 1.08008 * 120.35502 * 359.95265 * 18 17 16 36 36 H 1.07999 * 120.76320 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.44483 * 180.24926 * 20 19 18 38 38 H 0.96700 * 114.00259 * 269.72871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 8 1.0049 1.4456 2.1407 6 7 2.0182 3.3201 1.5233 7 6 1.6693 3.9772 2.7854 8 6 2.2095 5.3841 2.7854 9 1 2.7582 5.7518 1.9310 10 6 2.0041 6.2013 3.8767 11 7 2.4752 7.4292 3.8765 12 14 1.0557 5.5650 5.3548 13 1 1.9986 4.9373 6.3151 14 1 0.3541 6.6943 6.0164 15 1 0.0604 4.5575 4.9080 16 6 1.9954 -0.7660 -1.1376 17 6 1.6368 -2.2204 -0.9729 18 6 0.5028 -2.7166 -1.5849 19 6 0.1787 -4.0570 -1.4296 20 6 1.0136 -4.8538 -0.6654 21 6 2.1351 -4.2861 -0.0748 22 8 2.9588 -5.0553 0.6805 23 7 2.4107 -3.0037 -0.2460 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3633 0.5740 0.8526 26 1 -0.3633 0.4513 -0.9233 27 1 3.0798 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 2.5235 3.8013 0.8495 30 1 0.5851 4.0039 2.8935 31 1 2.1037 3.4215 3.6164 32 1 2.3310 8.0041 4.6444 33 1 3.0796 -0.6611 -1.1757 34 1 1.5610 -0.3872 -2.0628 35 1 -0.1254 -2.0683 -2.1780 36 1 -0.7024 -4.4702 -1.8981 37 1 0.7938 -5.9021 -0.5269 38 1 2.7236 -5.0804 1.6181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336364259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:59 Heat of formation + Delta-G solvation = -26.264865 kcal Electronic energy + Delta-G solvation = -20874.980325 eV Core-core repulsion = 17525.371232 eV Total energy + Delta-G solvation = -3349.609094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77857 -39.24054 -37.67171 -36.39953 -34.23020 -32.85947 -32.35713 -31.19713 -28.96085 -27.56686 -27.02570 -23.89270 -23.44317 -22.07621 -21.27222 -19.82424 -18.85830 -17.35701 -16.86713 -16.60044 -16.13199 -16.10377 -15.57868 -15.45938 -14.61817 -14.54449 -14.32350 -13.93122 -13.56271 -13.15383 -13.05699 -12.66063 -12.62757 -12.30868 -12.27306 -11.98827 -11.77475 -11.59447 -11.36622 -10.99843 -10.72717 -10.16060 -9.96807 -9.63932 -9.49050 -9.16184 -9.12433 -8.77099 -8.31589 -8.09886 -6.21193 -4.23345 0.69649 0.95392 3.08354 3.24722 3.28602 3.34017 3.42408 3.51287 3.74999 4.24726 4.29472 4.34175 4.46776 4.73463 4.77543 5.03590 5.08619 5.14124 5.20667 5.29524 5.30477 5.45395 5.52113 5.59201 5.62108 5.75099 5.82825 6.16588 6.21328 6.76428 6.91391 6.97694 7.08589 7.23530 7.25543 7.40558 7.75483 8.15393 8.53200 8.76252 8.97443 9.39218 10.90810 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.003005 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.405053 B = 9315.967372 C = 9555.943237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.514 5.514 3 C 0.037 3.963 4 C 0.502 3.498 5 O -0.541 6.541 6 N -0.708 5.708 7 C 0.222 3.778 8 C -0.543 4.543 9 H 0.079 0.921 10 C 0.077 3.923 11 N -0.893 5.893 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.261 1.261 16 C 0.101 3.899 17 C 0.170 3.830 18 C -0.178 4.178 19 C -0.060 4.060 20 C -0.191 4.191 21 C 0.312 3.688 22 O -0.485 6.485 23 N -0.482 5.482 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.021 0.979 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.396 0.604 30 H 0.024 0.976 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -21.778 -13.224 25.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.238 5.238 3 C -0.094 4.094 4 C 0.286 3.714 5 O -0.419 6.419 6 N -0.357 5.357 7 C 0.100 3.900 8 C -0.581 4.581 9 H 0.097 0.903 10 C -0.127 4.127 11 N -0.530 5.530 12 Si 0.704 3.296 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.185 1.185 16 C -0.028 4.028 17 C 0.031 3.969 18 C -0.198 4.198 19 C -0.086 4.086 20 C -0.213 4.213 21 C 0.133 3.867 22 O -0.292 6.292 23 N -0.201 5.201 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.040 0.960 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.598 -22.047 -12.153 25.431 hybrid contribution -1.325 0.105 -0.119 1.334 sum -4.923 -21.942 -12.271 25.618 Atomic orbital electron populations 1.22642 0.86471 1.02479 1.01572 1.61502 1.08823 1.12230 1.41259 1.22012 1.02014 0.89000 0.96379 1.20300 0.80416 0.82194 0.88499 1.90620 1.40280 1.64344 1.46642 1.46164 1.55895 1.12415 1.21234 1.19467 0.96099 0.92813 0.81631 1.21101 1.37074 0.95120 1.04810 0.90254 1.24800 0.94970 0.94573 0.98319 1.69880 1.45172 1.06948 1.31036 0.86808 0.80981 0.78926 0.82910 1.19828 1.20940 1.18534 1.21038 1.01924 0.87597 0.92207 1.20757 0.90062 0.95061 0.91030 1.22012 0.98760 0.96466 1.02585 1.21465 0.98486 0.93228 0.95434 1.22096 0.95091 1.01999 1.02065 1.19180 0.87487 0.86615 0.93382 1.84749 1.54669 1.65685 1.24126 1.66956 1.31960 1.04766 1.16426 0.91832 0.88824 0.96036 0.87868 0.91972 0.77083 0.95815 0.96163 0.92270 0.88598 0.92697 0.84516 0.84302 0.84316 0.73968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.84 60.06 0.53 0.74 16 2 N -0.51 -7.09 4.49 -245.83 -1.10 -8.19 16 3 C 0.04 0.50 5.45 -4.98 -0.03 0.47 16 4 C 0.50 9.44 7.52 -10.99 -0.08 9.36 16 5 O -0.54 -12.25 14.33 5.56 0.08 -12.17 16 6 N -0.71 -14.15 5.55 -61.47 -0.34 -14.49 16 7 C 0.22 5.46 4.50 -5.19 -0.02 5.44 16 8 C -0.54 -14.88 9.83 -34.44 -0.34 -15.22 16 9 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 10 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 11 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 12 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 16 C 0.10 1.09 5.28 -4.98 -0.03 1.07 16 17 C 0.17 1.96 5.64 -82.61 -0.47 1.49 16 18 C -0.18 -1.58 8.35 -39.44 -0.33 -1.91 16 19 C -0.06 -0.47 10.17 -39.31 -0.40 -0.86 16 20 C -0.19 -1.66 10.04 -39.28 -0.39 -2.06 16 21 C 0.31 3.57 7.74 -17.12 -0.13 3.44 16 22 O -0.48 -4.95 13.56 -18.73 -0.25 -5.20 16 23 N -0.48 -6.49 10.30 -9.55 -0.10 -6.59 16 24 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 25 H 0.09 1.53 5.82 -51.92 -0.30 1.23 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.10 1.21 7.93 -51.93 -0.41 0.80 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 29 H 0.40 6.87 8.32 -40.82 -0.34 6.53 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 31 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.10 1.03 7.93 -51.93 -0.41 0.61 16 34 H 0.06 0.46 8.02 -51.93 -0.42 0.04 16 35 H 0.14 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.40 2.29 9.06 45.56 0.41 2.70 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -35.54 324.09 -6.78 -42.32 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.26 Total: 4.29 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.79 Total: 4.05 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.77 Total: -55.03 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.17 Total: -17.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.54 -6.78 -42.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336364259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.054 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds