Wall clock time and date at job start Tue Mar 31 2020 01:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00156 * 2 1 4 4 C 1.50694 * 109.47181 * 66.05120 * 3 2 1 5 5 O 1.21278 * 120.00074 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00007 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99914 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.47023 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99687 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99700 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99682 * 180.02562 * 10 8 7 12 12 Si 1.86792 * 120.00305 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47109 * 90.00277 * 12 10 8 14 14 H 1.48507 * 109.47224 * 210.00568 * 12 10 8 15 15 H 1.48502 * 109.47174 * 329.99960 * 12 10 8 16 16 C 1.46902 * 110.99790 * 236.04500 * 2 1 3 17 17 C 1.50691 * 109.47243 * 293.95487 * 16 2 1 18 18 C 1.38085 * 119.58646 * 95.02210 * 17 16 2 19 19 C 1.38784 * 119.29420 * 179.97438 * 18 17 16 20 20 C 1.38424 * 118.48103 * 359.74525 * 19 18 17 21 21 C 1.38879 * 119.11183 * 0.49490 * 20 19 18 22 22 O 1.35677 * 119.68343 * 179.77049 * 21 20 19 23 23 N 1.31942 * 119.58389 * 274.99779 * 17 16 2 24 24 H 1.08997 * 109.47141 * 183.95933 * 1 2 3 25 25 H 1.09007 * 109.46532 * 303.95041 * 1 2 3 26 26 H 1.08999 * 109.47199 * 63.95263 * 1 2 3 27 27 H 1.09004 * 109.46916 * 186.05127 * 3 2 1 28 28 H 1.08996 * 109.46859 * 306.04389 * 3 2 1 29 29 H 0.97000 * 119.99797 * 359.97438 * 6 4 3 30 30 H 1.08993 * 109.47112 * 299.99794 * 7 6 4 31 31 H 1.08997 * 109.46869 * 60.00118 * 7 6 4 32 32 H 0.96993 * 120.00196 * 180.02562 * 11 10 8 33 33 H 1.09000 * 109.47357 * 173.95016 * 16 2 1 34 34 H 1.09001 * 109.46766 * 53.95397 * 16 2 1 35 35 H 1.08008 * 120.35502 * 359.95265 * 18 17 16 36 36 H 1.07999 * 120.76320 * 180.02562 * 19 18 17 37 37 H 1.07998 * 120.44483 * 180.24926 * 20 19 18 38 38 H 0.96700 * 114.00259 * 269.72871 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 8 1.0049 1.4456 2.1407 6 7 2.0182 3.3201 1.5233 7 6 1.6693 3.9772 2.7854 8 6 2.2095 5.3841 2.7854 9 1 2.7582 5.7518 1.9310 10 6 2.0041 6.2013 3.8767 11 7 2.4752 7.4292 3.8765 12 14 1.0557 5.5650 5.3548 13 1 1.9986 4.9373 6.3151 14 1 0.3541 6.6943 6.0164 15 1 0.0604 4.5575 4.9080 16 6 1.9954 -0.7660 -1.1376 17 6 1.6368 -2.2204 -0.9729 18 6 0.5028 -2.7166 -1.5849 19 6 0.1787 -4.0570 -1.4296 20 6 1.0136 -4.8538 -0.6654 21 6 2.1351 -4.2861 -0.0748 22 8 2.9588 -5.0553 0.6805 23 7 2.4107 -3.0037 -0.2460 24 1 -0.3633 -1.0252 0.0710 25 1 -0.3633 0.5740 0.8526 26 1 -0.3633 0.4513 -0.9233 27 1 3.0798 1.3443 -0.1083 28 1 1.5611 1.9273 -0.8309 29 1 2.5235 3.8013 0.8495 30 1 0.5851 4.0039 2.8935 31 1 2.1037 3.4215 3.6164 32 1 2.3310 8.0041 4.6444 33 1 3.0796 -0.6611 -1.1757 34 1 1.5610 -0.3872 -2.0628 35 1 -0.1254 -2.0683 -2.1780 36 1 -0.7024 -4.4702 -1.8981 37 1 0.7938 -5.9021 -0.5269 38 1 2.7236 -5.0804 1.6181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336364259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:58 Heat of formation + Delta-G solvation = -58.365203 kcal Electronic energy + Delta-G solvation = -20876.372300 eV Core-core repulsion = 17525.371232 eV Total energy + Delta-G solvation = -3351.001069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50793 -40.65933 -38.54505 -37.37431 -36.04750 -34.39495 -33.55891 -32.03254 -30.54526 -28.56369 -28.32028 -24.99731 -24.19824 -23.66895 -22.28000 -21.38745 -19.60477 -19.12736 -17.85801 -17.53245 -17.36070 -17.16364 -16.76815 -16.56455 -16.02659 -15.88503 -15.64224 -15.22186 -14.64554 -14.44898 -14.22164 -14.04499 -13.84445 -13.67332 -13.14433 -13.05644 -12.81762 -12.78830 -12.59872 -12.53453 -12.40674 -11.93596 -11.65005 -10.91821 -10.87316 -10.70928 -10.34380 -9.89228 -9.82137 -9.23588 -8.40001 -6.46597 0.00810 0.29796 1.32387 1.34556 1.46996 1.78593 2.22717 2.28237 2.58617 2.84686 2.95503 3.19971 3.57052 3.86510 3.94057 4.10169 4.18036 4.27041 4.35513 4.41045 4.46594 4.58327 4.63131 4.68935 4.80818 4.83434 5.04250 5.10864 5.12386 5.19317 5.27410 5.56941 5.60820 5.88720 6.06316 6.11795 6.54888 6.62592 6.90362 7.04193 7.16891 7.48076 8.74770 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033191 B = 0.003005 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.405053 B = 9315.967372 C = 9555.943237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.541 5.541 3 C 0.049 3.951 4 C 0.499 3.501 5 O -0.582 6.582 6 N -0.708 5.708 7 C 0.234 3.766 8 C -0.545 4.545 9 H 0.061 0.939 10 C 0.026 3.974 11 N -0.931 5.931 12 Si 0.937 3.063 13 H -0.267 1.267 14 H -0.272 1.272 15 H -0.261 1.261 16 C 0.105 3.895 17 C 0.145 3.855 18 C -0.174 4.174 19 C -0.056 4.056 20 C -0.188 4.188 21 C 0.286 3.714 22 O -0.499 6.499 23 N -0.526 5.526 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.409 0.591 30 H 0.012 0.988 31 H 0.007 0.993 32 H 0.272 0.728 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.594 -23.314 -14.799 28.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.081 4.081 4 C 0.286 3.714 5 O -0.462 6.462 6 N -0.359 5.359 7 C 0.110 3.890 8 C -0.583 4.583 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.570 5.570 12 Si 0.761 3.239 13 H -0.192 1.192 14 H -0.197 1.197 15 H -0.185 1.185 16 C -0.023 4.023 17 C 0.006 3.994 18 C -0.195 4.195 19 C -0.081 4.081 20 C -0.209 4.209 21 C 0.108 3.892 22 O -0.309 6.309 23 N -0.246 5.246 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.114 0.886 29 H 0.245 0.755 30 H 0.030 0.970 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.180 0.820 36 H 0.193 0.807 37 H 0.180 0.820 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -4.819 -23.595 -13.757 27.734 hybrid contribution -0.924 0.524 0.316 1.108 sum -5.743 -23.071 -13.441 27.311 Atomic orbital electron populations 1.22488 0.86403 1.02343 1.01159 1.61380 1.09185 1.12378 1.43666 1.21949 1.03444 0.89092 0.93637 1.21275 0.78906 0.81274 0.89958 1.90607 1.41911 1.65091 1.48575 1.46014 1.56489 1.13233 1.20116 1.19039 0.94938 0.91445 0.83551 1.21308 1.36435 0.96391 1.04169 0.92110 1.25593 0.95929 0.94745 1.01156 1.69979 1.46679 1.08157 1.32217 0.85863 0.79771 0.78587 0.79682 1.19224 1.19734 1.18540 1.21075 1.01803 0.87173 0.92226 1.20992 0.91170 0.95188 0.92016 1.22313 0.97863 0.97413 1.01868 1.21934 0.99076 0.92712 0.94408 1.22378 0.94068 1.03248 1.01210 1.19530 0.88723 0.86521 0.94475 1.84703 1.55249 1.65536 1.25363 1.66863 1.33655 1.06085 1.18027 0.91339 0.92597 0.93362 0.85795 0.88648 0.75526 0.97037 0.97538 0.91860 0.88998 0.89570 0.81955 0.80679 0.82038 0.72379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.84 127.69 1.13 1.71 16 2 N -0.54 -13.93 4.49 -931.67 -4.18 -18.11 16 3 C 0.05 1.22 5.45 85.55 0.47 1.69 16 4 C 0.50 18.42 7.52 87.66 0.66 19.08 16 5 O -0.58 -26.53 14.33 -3.02 -0.04 -26.58 16 6 N -0.71 -27.98 5.55 -466.79 -2.59 -30.57 16 7 C 0.23 11.58 4.50 85.63 0.39 11.96 16 8 C -0.55 -30.17 9.83 25.60 0.25 -29.92 16 9 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 10 C 0.03 1.48 5.47 84.65 0.46 1.94 16 11 N -0.93 -55.82 13.96 21.45 0.30 -55.53 16 12 Si 0.94 44.54 27.47 68.60 1.88 46.43 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.26 -12.32 6.54 99.48 0.65 -11.67 16 16 C 0.10 2.03 5.28 85.55 0.45 2.48 16 17 C 0.14 3.09 5.64 42.50 0.24 3.33 16 18 C -0.17 -2.56 8.35 22.36 0.19 -2.37 16 19 C -0.06 -0.67 10.17 22.45 0.23 -0.45 16 20 C -0.19 -2.87 10.04 22.47 0.23 -2.65 16 21 C 0.29 6.38 7.74 84.78 0.66 7.03 16 22 O -0.50 -10.19 13.56 -89.95 -1.22 -11.41 16 23 N -0.53 -13.97 10.30 -296.99 -3.06 -17.02 16 24 H 0.07 1.56 6.40 -2.39 -0.02 1.55 16 25 H 0.06 1.81 5.82 -2.38 -0.01 1.80 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.12 2.58 7.93 -2.38 -0.02 2.56 16 28 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 29 H 0.41 13.86 8.32 -92.71 -0.77 13.09 16 30 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 31 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.09 1.81 7.93 -2.39 -0.02 1.79 16 34 H 0.09 1.10 8.02 -2.39 -0.02 1.08 16 35 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 36 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 38 H 0.42 4.87 9.06 -74.06 -0.67 4.19 16 Total: -1.00 -78.71 324.09 -3.97 -82.68 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -0.40 Total: 16.28 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.34 Total: 13.83 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -9.53 Total: -121.23 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.26 Total: -37.99 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -78.71 -3.97 -82.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336364259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.317 kcal (2) G-P(sol) polarization free energy of solvation -78.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds