Wall clock time and date at job start Tue Mar 31 2020 01:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.75129 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47085 * 125.04878 * 5 4 3 7 7 C 1.50706 * 109.46565 * 180.02562 * 6 5 4 8 8 O 1.20820 * 120.00327 * 359.97438 * 7 6 5 9 9 O 1.34236 * 119.99639 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99894 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47363 * 330.00540 * 10 9 7 12 12 C 1.50696 * 109.47207 * 209.99979 * 10 9 7 13 13 H 1.08000 * 120.00330 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99807 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99796 * 180.02562 * 14 12 10 16 16 Si 1.86794 * 120.00556 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47241 * 89.99774 * 16 14 12 18 18 H 1.48498 * 109.47491 * 210.00300 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00050 * 16 14 12 20 20 C 1.53002 * 109.46982 * 90.00114 * 10 9 7 21 21 C 1.53002 * 117.49594 * 8.74727 * 20 10 9 22 22 C 1.52997 * 117.49872 * 300.09010 * 20 10 9 23 23 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 24 24 N 1.28634 * 108.88349 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 26 26 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 27 27 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 28 28 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46679 * 245.04746 * 5 4 3 30 30 H 1.09003 * 109.46810 * 5.04527 * 5 4 3 31 31 H 1.08999 * 109.47254 * 299.99515 * 6 5 4 32 32 H 1.08993 * 109.47530 * 60.00129 * 6 5 4 33 33 H 0.96996 * 120.00104 * 180.02562 * 15 14 12 34 34 H 1.08999 * 115.55265 * 154.41082 * 20 10 9 35 35 H 1.09001 * 117.49919 * 359.97438 * 21 20 10 36 36 H 1.09003 * 117.49701 * 145.02260 * 21 20 10 37 37 H 1.09005 * 117.50066 * 214.97533 * 22 20 10 38 38 H 1.08996 * 117.50297 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6706 1.0657 1.1816 7 6 6.9262 1.8992 1.1816 8 8 7.0977 2.7332 0.3244 9 8 7.8541 1.7149 2.1340 10 6 9.0383 2.5527 2.0714 11 1 9.2467 2.8103 1.0330 12 6 10.2129 1.8061 2.6493 13 1 10.0826 0.8022 3.0255 14 6 11.4540 2.4048 2.6976 15 7 12.4793 1.7530 3.2015 16 14 11.6795 4.1414 2.0475 17 1 11.4422 5.1149 3.1435 18 1 13.0635 4.3019 1.5338 19 1 10.7118 4.3879 0.9483 20 6 8.8011 3.8320 2.8764 21 6 7.5320 3.9057 3.7278 22 6 7.6427 4.7335 2.4450 23 7 3.4575 -0.6953 0.0003 24 7 2.2191 -1.0431 0.0002 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8899 -0.5140 27 1 -0.3634 -0.8901 -0.5136 28 1 1.9381 2.1281 0.0004 29 1 5.3306 1.3122 -0.9313 30 1 4.5249 2.5274 0.0899 31 1 5.1281 1.2269 2.1132 32 1 5.9337 0.0118 1.0920 33 1 13.3523 2.1742 3.2358 34 1 9.6971 4.3154 3.2658 35 1 6.8659 3.0430 3.7140 36 1 7.5929 4.4381 4.6770 37 1 7.7764 5.8101 2.5508 38 1 7.0498 4.4155 1.5875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:18 Heat of formation + Delta-G solvation = 40.069383 kcal Electronic energy + Delta-G solvation = -21414.644616 eV Core-core repulsion = 18067.911991 eV Total energy + Delta-G solvation = -3346.732625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.44332 -39.98295 -36.98746 -35.37716 -34.92531 -33.58077 -32.71912 -30.48966 -28.72935 -28.17094 -25.40023 -22.81907 -22.30275 -21.81605 -21.46545 -20.46194 -19.27399 -17.55757 -17.10735 -16.82218 -16.61154 -16.20712 -15.62595 -15.17740 -14.84192 -14.33198 -13.80714 -13.74741 -13.59763 -13.03932 -12.90364 -12.72548 -12.37761 -11.86854 -11.82087 -11.58323 -11.41399 -11.31422 -10.91948 -10.79754 -10.72684 -10.27040 -10.19169 -9.99338 -9.79122 -9.60154 -9.36385 -9.25310 -8.78569 -8.65208 -6.20294 -4.22400 1.35888 2.09645 2.34460 2.85168 3.19506 3.32237 3.38933 3.50885 4.05713 4.27712 4.29334 4.52891 4.53945 4.69738 4.81070 4.83212 5.07495 5.08101 5.21173 5.37472 5.54117 5.55885 5.67735 5.69364 5.77419 5.90945 6.03163 6.14456 6.20432 6.30017 6.31668 6.50920 6.73986 6.80546 6.88101 7.36693 7.54210 8.25676 8.32054 8.62119 8.88040 9.36665 10.91565 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.003559 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.223040 B = 7866.114689 C = 8191.657784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.298 5.298 3 C -0.049 4.049 4 C -0.013 4.013 5 C -0.020 4.020 6 C -0.110 4.110 7 C 0.454 3.546 8 O -0.521 6.521 9 O -0.338 6.338 10 C 0.225 3.775 11 H 0.052 0.948 12 C -0.519 4.519 13 H 0.088 0.912 14 C 0.080 3.920 15 N -0.888 5.888 16 Si 0.873 3.127 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.256 1.256 20 C -0.164 4.164 21 C -0.171 4.171 22 C -0.206 4.206 23 N -0.260 5.260 24 N -0.088 5.088 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.192 0.808 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.104 2.082 -5.141 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.092 5.092 3 C -0.200 4.200 4 C -0.151 4.151 5 C -0.059 4.059 6 C -0.148 4.148 7 C 0.297 3.703 8 O -0.412 6.412 9 O -0.253 6.253 10 C 0.171 3.829 11 H 0.070 0.930 12 C -0.557 4.557 13 H 0.106 0.894 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.180 1.180 20 C -0.182 4.182 21 C -0.208 4.208 22 C -0.243 4.243 23 N -0.128 5.128 24 N -0.067 5.067 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.209 0.791 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.810 0.779 -5.326 24.411 hybrid contribution 0.056 2.288 -0.148 2.293 sum -23.754 3.067 -5.474 24.568 Atomic orbital electron populations 1.22248 0.72838 1.05836 1.04996 1.47239 1.09359 1.05023 1.47542 1.23411 0.90835 0.94735 1.10971 1.22008 0.95273 0.91454 1.06339 1.19670 0.89425 0.97479 0.99339 1.21251 0.91673 1.01466 1.00445 1.23455 0.85473 0.81821 0.79513 1.90570 1.78420 1.34438 1.37723 1.86531 1.30092 1.60107 1.48585 1.20450 0.80315 0.85381 0.96773 0.92998 1.20736 0.89905 1.03086 1.41938 0.89379 1.24727 0.95315 0.97836 0.94443 1.69844 1.00671 1.37707 1.44234 0.87050 0.77712 0.84911 0.80224 1.20083 1.21541 1.17983 1.23426 0.92704 0.98945 1.03124 1.22757 1.01713 1.02025 0.94294 1.23260 1.04823 0.97080 0.99170 1.75095 1.09246 1.12092 1.16319 1.78326 0.96506 1.12109 1.19772 0.89075 0.88344 0.88094 0.79142 0.88954 0.89177 0.88281 0.87155 0.92090 0.87499 0.88885 0.89718 0.90041 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 11.39 59.84 0.68 0.95 16 2 N -0.30 -2.63 3.74 -68.06 -0.25 -2.89 16 3 C -0.05 -0.43 11.54 -17.04 -0.20 -0.62 16 4 C -0.01 -0.15 6.50 -82.77 -0.54 -0.69 16 5 C -0.02 -0.24 5.08 -27.88 -0.14 -0.38 16 6 C -0.11 -1.56 5.79 -27.88 -0.16 -1.72 16 7 C 0.45 8.59 6.91 36.01 0.25 8.84 16 8 O -0.52 -10.71 13.03 -18.75 -0.24 -10.95 16 9 O -0.34 -7.59 8.38 -39.27 -0.33 -7.92 16 10 C 0.22 5.63 2.00 -27.88 -0.06 5.58 16 11 H 0.05 1.38 6.22 -51.93 -0.32 1.06 16 12 C -0.52 -14.94 9.48 -34.44 -0.33 -15.26 16 13 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 14 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 15 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 16 Si 0.87 21.61 24.48 -169.99 -4.16 17.45 16 17 H -0.27 -6.52 6.72 56.52 0.38 -6.14 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.24 6.53 56.52 0.37 -5.87 16 20 C -0.16 -3.72 4.45 -90.62 -0.40 -4.13 16 21 C -0.17 -3.26 9.80 -26.69 -0.26 -3.52 16 22 C -0.21 -3.98 9.85 -26.70 -0.26 -4.24 16 23 N -0.26 -3.76 12.40 33.29 0.41 -3.35 16 24 N -0.09 -1.13 13.16 60.35 0.79 -0.33 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.09 0.95 8.08 -51.93 -0.42 0.54 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.11 2.55 4.39 -51.93 -0.23 2.33 16 35 H 0.09 1.72 6.91 -51.93 -0.36 1.37 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.10 2.00 5.37 -51.93 -0.28 1.72 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -35.17 318.22 -4.75 -39.92 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.02 Total: 2.34 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.51 Total: -13.00 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 1.73 Total: -32.64 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.57 Total: -18.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.16 Total: 17.45 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.17 -4.75 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.991 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds