Wall clock time and date at job start Tue Mar 31 2020 01:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.75129 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47085 * 125.04878 * 5 4 3 7 7 C 1.50706 * 109.46565 * 180.02562 * 6 5 4 8 8 O 1.20820 * 120.00327 * 359.97438 * 7 6 5 9 9 O 1.34236 * 119.99639 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99894 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47363 * 330.00540 * 10 9 7 12 12 C 1.50696 * 109.47207 * 209.99979 * 10 9 7 13 13 H 1.08000 * 120.00330 * 0.02562 * 12 10 9 14 14 C 1.37877 * 119.99807 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99796 * 180.02562 * 14 12 10 16 16 Si 1.86794 * 120.00556 * 0.02562 * 14 12 10 17 17 H 1.48501 * 109.47241 * 89.99774 * 16 14 12 18 18 H 1.48498 * 109.47491 * 210.00300 * 16 14 12 19 19 H 1.48504 * 109.46748 * 330.00050 * 16 14 12 20 20 C 1.53002 * 109.46982 * 90.00114 * 10 9 7 21 21 C 1.53002 * 117.49594 * 8.74727 * 20 10 9 22 22 C 1.52997 * 117.49872 * 300.09010 * 20 10 9 23 23 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 24 24 N 1.28634 * 108.88349 * 359.97438 * 23 4 3 25 25 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 26 26 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 27 27 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 28 28 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.46679 * 245.04746 * 5 4 3 30 30 H 1.09003 * 109.46810 * 5.04527 * 5 4 3 31 31 H 1.08999 * 109.47254 * 299.99515 * 6 5 4 32 32 H 1.08993 * 109.47530 * 60.00129 * 6 5 4 33 33 H 0.96996 * 120.00104 * 180.02562 * 15 14 12 34 34 H 1.08999 * 115.55265 * 154.41082 * 20 10 9 35 35 H 1.09001 * 117.49919 * 359.97438 * 21 20 10 36 36 H 1.09003 * 117.49701 * 145.02260 * 21 20 10 37 37 H 1.09005 * 117.50066 * 214.97533 * 22 20 10 38 38 H 1.08996 * 117.50297 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6706 1.0657 1.1816 7 6 6.9262 1.8992 1.1816 8 8 7.0977 2.7332 0.3244 9 8 7.8541 1.7149 2.1340 10 6 9.0383 2.5527 2.0714 11 1 9.2467 2.8103 1.0330 12 6 10.2129 1.8061 2.6493 13 1 10.0826 0.8022 3.0255 14 6 11.4540 2.4048 2.6976 15 7 12.4793 1.7530 3.2015 16 14 11.6795 4.1414 2.0475 17 1 11.4422 5.1149 3.1435 18 1 13.0635 4.3019 1.5338 19 1 10.7118 4.3879 0.9483 20 6 8.8011 3.8320 2.8764 21 6 7.5320 3.9057 3.7278 22 6 7.6427 4.7335 2.4450 23 7 3.4575 -0.6953 0.0003 24 7 2.2191 -1.0431 0.0002 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8899 -0.5140 27 1 -0.3634 -0.8901 -0.5136 28 1 1.9381 2.1281 0.0004 29 1 5.3306 1.3122 -0.9313 30 1 4.5249 2.5274 0.0899 31 1 5.1281 1.2269 2.1132 32 1 5.9337 0.0118 1.0920 33 1 13.3523 2.1742 3.2358 34 1 9.6971 4.3154 3.2658 35 1 6.8659 3.0430 3.7140 36 1 7.5929 4.4381 4.6770 37 1 7.7764 5.8101 2.5508 38 1 7.0498 4.4155 1.5875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:17 Heat of formation + Delta-G solvation = 15.807480 kcal Electronic energy + Delta-G solvation = -21415.696691 eV Core-core repulsion = 18067.911991 eV Total energy + Delta-G solvation = -3347.784700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.20143 -41.61199 -38.58749 -36.65607 -36.09416 -34.89635 -34.48249 -31.51350 -30.57679 -28.69946 -26.57865 -24.76098 -23.29762 -23.00481 -22.72839 -21.68672 -20.89038 -19.07042 -18.52839 -17.98596 -17.79024 -17.56583 -17.30392 -16.46311 -15.86118 -15.63465 -15.29630 -14.85502 -14.52282 -14.42209 -14.02683 -13.80708 -13.63917 -13.41390 -13.23845 -13.11891 -12.68347 -12.61770 -12.42923 -12.27765 -12.11172 -11.88036 -11.66001 -11.44429 -11.41036 -11.00896 -10.95343 -10.75487 -10.61729 -10.13256 -8.43229 -6.51486 0.67132 1.23447 1.31544 1.32589 1.44107 1.45057 1.61332 2.02899 2.22070 2.85128 3.01250 3.37141 3.73715 3.79764 3.91937 4.03752 4.05831 4.13420 4.15480 4.18849 4.36380 4.39347 4.50413 4.65603 4.67623 4.76464 4.77337 4.86037 4.99572 5.03897 5.11474 5.14486 5.22781 5.28335 5.39608 5.70856 5.72505 6.18040 6.52480 6.93897 7.14117 7.52400 8.72806 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035560 B = 0.003559 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.223040 B = 7866.114689 C = 8191.657784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.024 4.024 4 C -0.039 4.039 5 C -0.009 4.009 6 C -0.098 4.098 7 C 0.452 3.548 8 O -0.535 6.535 9 O -0.354 6.354 10 C 0.232 3.768 11 H 0.032 0.968 12 C -0.535 4.535 13 H 0.043 0.957 14 C 0.029 3.971 15 N -0.933 5.933 16 Si 0.940 3.060 17 H -0.253 1.253 18 H -0.284 1.284 19 H -0.251 1.251 20 C -0.203 4.203 21 C -0.154 4.154 22 C -0.182 4.182 23 N -0.307 5.307 24 N -0.124 5.124 25 H 0.108 0.892 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.238 0.762 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.274 0.726 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.220 5.008 -5.333 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.176 4.176 4 C -0.178 4.178 5 C -0.048 4.048 6 C -0.136 4.136 7 C 0.297 3.703 8 O -0.426 6.426 9 O -0.270 6.270 10 C 0.178 3.822 11 H 0.050 0.950 12 C -0.572 4.572 13 H 0.061 0.939 14 C -0.170 4.170 15 N -0.571 5.571 16 Si 0.764 3.236 17 H -0.178 1.178 18 H -0.211 1.211 19 H -0.175 1.175 20 C -0.222 4.222 21 C -0.191 4.191 22 C -0.219 4.219 23 N -0.174 5.174 24 N -0.103 5.103 25 H 0.126 0.874 26 H 0.151 0.849 27 H 0.123 0.877 28 H 0.254 0.746 29 H 0.095 0.905 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.977 3.672 -5.520 27.780 hybrid contribution 0.888 1.273 -0.104 1.556 sum -26.089 4.946 -5.623 27.143 Atomic orbital electron populations 1.22751 0.69683 1.07809 1.06718 1.47698 1.11090 1.04257 1.45213 1.24029 0.89516 0.96348 1.07714 1.22060 0.96415 0.90860 1.08433 1.19563 0.89180 0.98717 0.97373 1.21326 0.89635 0.99910 1.02743 1.24339 0.85744 0.81954 0.78286 1.90550 1.78761 1.35371 1.37929 1.86520 1.30079 1.60250 1.50194 1.19986 0.80301 0.86349 0.95559 0.95032 1.20944 0.92350 1.01870 1.42078 0.93857 1.25577 0.94682 1.02356 0.94405 1.69978 1.01417 1.39920 1.45805 0.85972 0.77646 0.79747 0.80196 1.17764 1.21082 1.17514 1.23146 0.94136 0.98901 1.05984 1.22897 0.98645 1.02171 0.95354 1.23304 1.01445 0.98099 0.99024 1.75023 1.10549 1.13854 1.17934 1.78236 0.96519 1.13778 1.21794 0.87401 0.84911 0.87724 0.74617 0.90535 0.87047 0.86054 0.87884 0.91636 0.88606 0.88640 0.87240 0.87291 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.39 127.77 1.46 1.67 16 2 N -0.29 -4.36 3.74 -369.25 -1.38 -5.74 16 3 C -0.02 -0.34 11.54 83.49 0.96 0.63 16 4 C -0.04 -0.85 6.50 41.60 0.27 -0.58 16 5 C -0.01 -0.21 5.08 29.85 0.15 -0.06 16 6 C -0.10 -2.70 5.79 29.85 0.17 -2.52 16 7 C 0.45 16.94 6.91 71.24 0.49 17.43 16 8 O -0.54 -21.61 13.03 21.98 0.29 -21.32 16 9 O -0.35 -16.18 8.38 -51.48 -0.43 -16.61 16 10 C 0.23 11.83 2.00 29.85 0.06 11.89 16 11 H 0.03 1.72 6.22 -2.39 -0.01 1.71 16 12 C -0.53 -32.15 9.48 25.60 0.24 -31.91 16 13 H 0.04 2.89 8.06 -2.91 -0.02 2.87 16 14 C 0.03 1.73 5.44 84.65 0.46 2.19 16 15 N -0.93 -58.35 13.96 21.45 0.30 -58.05 16 16 Si 0.94 45.02 24.48 68.60 1.68 46.70 16 17 H -0.25 -11.14 6.72 99.48 0.67 -10.48 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.25 -11.76 6.53 99.48 0.65 -11.11 16 20 C -0.20 -8.96 4.45 -10.79 -0.05 -9.01 16 21 C -0.15 -5.44 9.80 30.62 0.30 -5.14 16 22 C -0.18 -6.41 9.85 30.62 0.30 -6.10 16 23 N -0.31 -8.84 12.40 -48.60 -0.60 -9.45 16 24 N -0.12 -3.11 13.16 37.02 0.49 -2.62 16 25 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.13 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.24 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.11 2.02 8.08 -2.39 -0.02 2.00 16 31 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.10 4.42 4.39 -2.39 -0.01 4.41 16 35 H 0.10 3.31 6.91 -2.39 -0.02 3.30 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 38 H 0.10 3.59 5.37 -2.39 -0.01 3.58 16 Total: -1.00 -81.11 318.22 6.14 -74.97 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.98 Total: 13.64 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 4.82 Total: -21.52 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.20 Total: -75.85 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.15 Total: -37.93 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.68 Total: 46.70 kcal Total: -81.11 6.14 -74.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.778 kcal (2) G-P(sol) polarization free energy of solvation -81.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds