Wall clock time and date at job start Tue Mar 31 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35911 * 117.00190 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25337 * 3 2 1 5 5 C 1.38528 * 118.37272 * 180.26468 * 4 3 2 6 6 C 1.38252 * 119.22612 * 359.75203 * 5 4 3 7 7 N 1.31851 * 120.88270 * 359.97438 * 6 5 4 8 8 C 1.31838 * 121.78221 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.66121 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46769 * 90.00320 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99724 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00143 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00003 * 20 18 16 23 23 H 1.48500 * 109.47317 * 330.00365 * 20 18 16 24 24 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46679 * 299.99563 * 1 2 3 26 26 H 1.08999 * 109.47512 * 60.00000 * 1 2 3 27 27 H 1.08005 * 120.81272 * 0.02562 * 4 3 2 28 28 H 1.08008 * 120.39154 * 179.72887 * 5 4 3 29 29 H 1.07996 * 119.56368 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47210 * 330.00678 * 9 8 7 31 31 H 1.08994 * 109.47121 * 210.00647 * 9 8 7 32 32 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 33 33 H 0.97000 * 119.99549 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.47602 * 299.99940 * 14 13 11 35 35 H 1.09006 * 109.46868 * 59.99976 * 14 13 11 36 36 H 1.09000 * 109.47211 * 300.00689 * 15 14 13 37 37 H 1.09007 * 109.46376 * 60.00147 * 15 14 13 38 38 H 0.96999 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3841 0.0053 5 6 1.9716 3.5946 -0.0006 6 6 3.3541 3.5976 -0.0062 7 7 4.0334 2.4675 -0.0055 8 6 3.4306 1.2950 0.0000 9 6 4.2542 0.0330 -0.0001 10 7 4.5266 -0.3723 1.3811 11 6 5.2471 -1.4844 1.6274 12 8 5.6753 -2.1484 0.7032 13 7 5.4929 -1.8604 2.8981 14 6 6.2765 -3.0689 3.1658 15 6 6.4083 -3.2670 4.6772 16 6 7.2138 -4.5106 4.9526 17 1 7.5942 -5.1003 4.1316 18 6 7.4652 -4.8952 6.2525 19 7 7.0015 -4.1773 7.2521 20 14 8.4643 -6.4362 6.5938 21 1 9.9040 -6.0832 6.6824 22 1 8.0224 -7.0384 7.8773 23 1 8.2608 -7.4120 5.4931 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 0.2183 2.3518 0.0099 28 1 1.4233 4.5251 -0.0011 29 1 3.8849 4.5381 -0.0112 30 1 5.1961 0.2139 -0.5181 31 1 3.7055 -0.7589 -0.5097 32 1 4.1847 0.1572 2.1184 33 1 5.1516 -1.3304 3.6353 34 1 5.7745 -3.9319 2.7283 35 1 7.2682 -2.9638 2.7256 36 1 6.9105 -2.4040 5.1144 37 1 5.4166 -3.3720 5.1175 38 1 7.1787 -4.4477 8.1666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478423315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:15 Heat of formation + Delta-G solvation = -37.495578 kcal Electronic energy + Delta-G solvation = -20670.458179 eV Core-core repulsion = 17320.362085 eV Total energy + Delta-G solvation = -3350.096094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13499 -39.34389 -38.49716 -35.26450 -34.40996 -32.82210 -32.41972 -31.23440 -29.43144 -27.88604 -26.70242 -24.44789 -23.25671 -22.38789 -20.96068 -20.44179 -18.56803 -18.06473 -17.49560 -16.57108 -16.32802 -16.20879 -15.54847 -15.14687 -14.76167 -14.49039 -14.29590 -14.11791 -13.84481 -13.46712 -13.38844 -13.16309 -12.52478 -12.33666 -12.22748 -11.86386 -11.72696 -11.12322 -10.98340 -10.58353 -10.24464 -10.20713 -9.92791 -9.83907 -9.49560 -9.20886 -8.89149 -8.75871 -8.42420 -8.14047 -6.04268 -4.06490 0.63808 0.87296 2.77779 3.05390 3.33444 3.39225 3.43861 3.56658 3.72392 3.96450 4.20894 4.30914 4.45027 4.57614 4.72121 4.73479 4.82951 4.88198 5.08882 5.15981 5.32838 5.40482 5.61007 5.75757 5.85162 6.06174 6.38596 6.48868 6.67591 6.78676 6.86279 7.11048 7.34166 7.62965 7.64441 7.70564 7.95640 8.32557 8.54222 8.98970 9.11425 9.57928 11.07504 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.002777 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.345288 B =10081.137591 C =10233.689031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.098 3.902 4 C -0.169 4.169 5 C -0.126 4.126 6 C 0.059 3.941 7 N -0.430 5.430 8 C 0.085 3.915 9 C 0.202 3.798 10 N -0.744 5.744 11 C 0.702 3.298 12 O -0.598 6.598 13 N -0.739 5.739 14 C 0.141 3.859 15 C 0.013 3.987 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.272 1.272 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.141 0.859 28 H 0.139 0.861 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.393 0.607 33 H 0.392 0.608 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 17.163 -14.040 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.049 3.951 4 C -0.196 4.196 5 C -0.147 4.147 6 C -0.099 4.099 7 N -0.139 5.139 8 C -0.055 4.055 9 C 0.077 3.923 10 N -0.401 5.401 11 C 0.402 3.598 12 O -0.477 6.477 13 N -0.392 5.392 14 C 0.018 3.982 15 C -0.025 4.025 16 C -0.558 4.558 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.124 0.876 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.178 0.822 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.226 0.774 33 H 0.225 0.775 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.713 16.320 -14.717 26.446 hybrid contribution -1.139 0.036 1.040 1.543 sum -15.852 16.356 -13.676 26.568 Atomic orbital electron populations 1.23162 0.77990 1.04703 1.01260 1.86221 1.21596 1.25450 1.87784 1.19987 0.93155 0.85399 0.96583 1.21736 1.00935 0.92084 1.04822 1.22052 0.95794 0.98315 0.98491 1.22706 0.91440 0.96477 0.99256 1.67585 1.40002 0.97462 1.08901 1.20775 0.88191 0.94275 1.02295 1.19683 0.98597 0.90261 0.83782 1.44966 1.59264 1.28227 1.07645 1.15980 0.79096 0.80634 0.84116 1.90886 1.57417 1.55811 1.43556 1.45503 1.58396 1.30309 1.05011 1.21579 0.93432 0.83453 0.99747 1.19328 0.97705 0.97627 0.87829 1.21071 1.33434 1.09070 0.92209 0.92194 1.24997 0.95953 0.97186 0.96220 1.69961 1.45636 1.38958 0.98889 0.86511 0.80281 0.83088 0.77662 1.20577 1.21235 1.19716 0.87613 0.92441 0.92546 0.84122 0.84341 0.82205 0.89978 0.89791 0.77445 0.77471 0.92792 0.92785 0.95978 0.96003 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.30 -3.01 9.54 -19.46 -0.19 -3.19 16 3 C 0.10 0.98 6.67 -39.07 -0.26 0.72 16 4 C -0.17 -1.25 9.14 -39.14 -0.36 -1.61 16 5 C -0.13 -0.84 10.11 -39.47 -0.40 -1.24 16 6 C 0.06 0.49 11.18 -17.54 -0.20 0.30 16 7 N -0.43 -4.96 10.27 -9.35 -0.10 -5.06 16 8 C 0.08 0.99 6.16 -82.42 -0.51 0.49 16 9 C 0.20 2.77 5.75 -5.19 -0.03 2.74 16 10 N -0.74 -11.02 5.55 -66.41 -0.37 -11.39 16 11 C 0.70 13.33 8.57 -86.92 -0.74 12.59 16 12 O -0.60 -13.64 16.34 5.28 0.09 -13.55 16 13 N -0.74 -13.98 5.56 -65.22 -0.36 -14.35 16 14 C 0.14 3.16 5.61 -4.04 -0.02 3.14 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 17 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.27 7.69 -51.93 -0.40 -0.13 16 26 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 27 H 0.14 0.67 6.45 -52.48 -0.34 0.33 16 28 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 29 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 32 H 0.39 4.99 8.48 -40.82 -0.35 4.65 16 33 H 0.39 6.46 8.49 -40.82 -0.35 6.12 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -34.85 331.43 -7.44 -42.29 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.14 Total: 4.43 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.08 Total: 4.95 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.09 Total: -56.63 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.10 Total: -16.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.85 -7.44 -42.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478423315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.792 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds