Wall clock time and date at job start Tue Mar 31 2020 02:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35911 * 117.00190 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25337 * 3 2 1 5 5 C 1.38528 * 118.37272 * 180.26468 * 4 3 2 6 6 C 1.38252 * 119.22612 * 359.75203 * 5 4 3 7 7 N 1.31851 * 120.88270 * 359.97438 * 6 5 4 8 8 C 1.31838 * 121.78221 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.66121 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.46769 * 90.00320 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47211 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99724 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47294 * 90.00143 * 20 18 16 22 22 H 1.48499 * 109.47218 * 210.00003 * 20 18 16 23 23 H 1.48500 * 109.47317 * 330.00365 * 20 18 16 24 24 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46679 * 299.99563 * 1 2 3 26 26 H 1.08999 * 109.47512 * 60.00000 * 1 2 3 27 27 H 1.08005 * 120.81272 * 0.02562 * 4 3 2 28 28 H 1.08008 * 120.39154 * 179.72887 * 5 4 3 29 29 H 1.07996 * 119.56368 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47210 * 330.00678 * 9 8 7 31 31 H 1.08994 * 109.47121 * 210.00647 * 9 8 7 32 32 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 33 33 H 0.97000 * 119.99549 * 359.97438 * 13 11 10 34 34 H 1.09000 * 109.47602 * 299.99940 * 14 13 11 35 35 H 1.09006 * 109.46868 * 59.99976 * 14 13 11 36 36 H 1.09000 * 109.47211 * 300.00689 * 15 14 13 37 37 H 1.09007 * 109.46376 * 60.00147 * 15 14 13 38 38 H 0.96999 * 119.99800 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3841 0.0053 5 6 1.9716 3.5946 -0.0006 6 6 3.3541 3.5976 -0.0062 7 7 4.0334 2.4675 -0.0055 8 6 3.4306 1.2950 0.0000 9 6 4.2542 0.0330 -0.0001 10 7 4.5266 -0.3723 1.3811 11 6 5.2471 -1.4844 1.6274 12 8 5.6753 -2.1484 0.7032 13 7 5.4929 -1.8604 2.8981 14 6 6.2765 -3.0689 3.1658 15 6 6.4083 -3.2670 4.6772 16 6 7.2138 -4.5106 4.9526 17 1 7.5942 -5.1003 4.1316 18 6 7.4652 -4.8952 6.2525 19 7 7.0015 -4.1773 7.2521 20 14 8.4643 -6.4362 6.5938 21 1 9.9040 -6.0832 6.6824 22 1 8.0224 -7.0384 7.8773 23 1 8.2608 -7.4120 5.4931 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 0.2183 2.3518 0.0099 28 1 1.4233 4.5251 -0.0011 29 1 3.8849 4.5381 -0.0112 30 1 5.1961 0.2139 -0.5181 31 1 3.7055 -0.7589 -0.5097 32 1 4.1847 0.1572 2.1184 33 1 5.1516 -1.3304 3.6353 34 1 5.7745 -3.9319 2.7283 35 1 7.2682 -2.9638 2.7256 36 1 6.9105 -2.4040 5.1144 37 1 5.4166 -3.3720 5.1175 38 1 7.1787 -4.4477 8.1666 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001478423315.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:15 Heat of formation + Delta-G solvation = -64.150342 kcal Electronic energy + Delta-G solvation = -20671.614016 eV Core-core repulsion = 17320.362085 eV Total energy + Delta-G solvation = -3351.251931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84609 -40.84925 -39.15003 -36.81836 -35.93104 -34.80783 -33.26476 -32.16554 -31.18023 -28.39762 -27.86467 -26.32450 -23.86897 -23.33799 -22.78312 -21.99922 -19.67084 -19.03985 -18.42395 -18.18544 -17.58884 -16.90889 -16.69426 -16.63365 -16.47326 -15.44446 -15.37290 -15.26087 -15.15573 -14.72455 -14.46376 -14.24080 -14.08602 -13.69333 -13.20271 -13.10460 -12.91557 -12.50975 -12.37606 -12.31507 -12.22028 -11.68608 -11.51667 -11.26349 -10.74990 -10.60442 -10.59364 -10.36491 -9.73293 -9.45312 -8.22805 -6.33088 -0.03786 0.25481 1.42752 1.43708 1.55126 1.78009 2.15794 2.21984 2.42461 2.75463 3.11911 3.17766 3.43698 3.57166 3.79289 4.05512 4.22253 4.32911 4.37486 4.45278 4.51092 4.52353 4.54981 4.71442 4.76257 4.87904 5.02254 5.10297 5.31507 5.39541 5.47647 5.52565 5.60619 5.79645 5.99382 6.18346 6.21506 6.79954 6.95344 7.09230 7.36057 7.57627 8.89311 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030416 B = 0.002777 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.345288 B =10081.137591 C =10233.689031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.165 4.165 5 C -0.110 4.110 6 C 0.049 3.951 7 N -0.461 5.461 8 C 0.056 3.944 9 C 0.206 3.794 10 N -0.724 5.724 11 C 0.702 3.298 12 O -0.638 6.638 13 N -0.732 5.732 14 C 0.161 3.839 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.172 0.828 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.405 0.595 33 H 0.406 0.594 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 18.501 -14.127 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.042 3.958 4 C -0.191 4.191 5 C -0.129 4.129 6 C -0.109 4.109 7 N -0.171 5.171 8 C -0.082 4.082 9 C 0.082 3.918 10 N -0.380 5.380 11 C 0.401 3.599 12 O -0.520 6.520 13 N -0.387 5.387 14 C 0.036 3.964 15 C -0.013 4.013 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.189 0.811 28 H 0.196 0.804 29 H 0.201 0.799 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.240 0.760 33 H 0.241 0.759 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.027 0.973 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.225 17.695 -14.799 28.203 hybrid contribution -0.788 -0.244 1.036 1.324 sum -17.013 17.451 -13.763 27.989 Atomic orbital electron populations 1.23432 0.75969 1.05714 1.02809 1.86182 1.23824 1.25991 1.87876 1.20034 0.92698 0.86406 0.96668 1.22125 1.02386 0.91212 1.03399 1.22492 0.95169 0.99621 0.95638 1.23233 0.92739 0.96272 0.98678 1.67475 1.41402 0.98211 1.10018 1.20346 0.88831 0.93431 1.05635 1.19588 0.98164 0.91625 0.82448 1.44828 1.57621 1.26684 1.08907 1.16070 0.79189 0.81258 0.83351 1.90855 1.59108 1.57358 1.44639 1.45204 1.58175 1.29589 1.05734 1.21099 0.93308 0.84561 0.97400 1.19128 0.96352 0.96319 0.89513 1.21471 1.34161 1.10162 0.92676 0.92240 1.25882 0.96936 1.00475 0.95923 1.70064 1.46607 1.40631 0.99381 0.85424 0.78743 0.79014 0.77738 1.19762 1.20433 1.19041 0.87079 0.91030 0.90713 0.81090 0.80415 0.79881 0.91626 0.90802 0.75998 0.75913 0.93697 0.93815 0.97373 0.97273 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.26 16 2 O -0.33 -6.34 9.54 -92.55 -0.88 -7.22 16 3 C 0.09 1.72 6.67 22.60 0.15 1.87 16 4 C -0.16 -1.93 9.14 22.56 0.21 -1.72 16 5 C -0.11 -1.05 10.11 22.34 0.23 -0.83 16 6 C 0.05 0.71 11.18 84.69 0.95 1.66 16 7 N -0.46 -10.40 10.27 -183.51 -1.88 -12.29 16 8 C 0.06 1.31 6.16 42.67 0.26 1.57 16 9 C 0.21 5.93 5.75 85.63 0.49 6.42 16 10 N -0.72 -21.90 5.55 -482.30 -2.68 -24.58 16 11 C 0.70 27.26 8.57 179.05 1.53 28.79 16 12 O -0.64 -30.00 16.34 -4.01 -0.07 -30.07 16 13 N -0.73 -28.17 5.56 -478.52 -2.66 -30.83 16 14 C 0.16 7.38 5.61 86.38 0.48 7.86 16 15 C 0.02 1.28 5.09 29.85 0.15 1.43 16 16 C -0.55 -31.33 9.11 25.60 0.23 -31.09 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 20 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.07 0.48 7.69 -2.39 -0.02 0.46 16 26 H 0.07 0.44 7.71 -2.39 -0.02 0.42 16 27 H 0.17 0.88 6.45 -2.91 -0.02 0.86 16 28 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 29 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.24 7.51 -2.39 -0.02 2.22 16 32 H 0.40 10.30 8.48 -92.71 -0.79 9.51 16 33 H 0.41 13.42 8.49 -92.71 -0.79 12.63 16 34 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -76.27 331.43 -0.08 -76.35 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -0.48 Total: 19.09 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.26 Total: 18.06 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -6.94 Total: -122.64 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.95 Total: -37.29 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -76.27 -0.08 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478423315.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.200 kcal (2) G-P(sol) polarization free energy of solvation -76.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds