Wall clock time and date at job start Tue Mar 31 2020 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 120.00339 * 2 1 4 4 H 1.08004 * 120.00333 * 203.04543 * 3 2 1 5 5 C 1.38817 * 119.99927 * 23.04396 * 3 2 1 6 6 N 1.31615 * 119.99830 * 12.92603 * 5 3 2 7 7 Si 1.86796 * 120.00227 * 192.93271 * 5 3 2 8 8 H 1.48506 * 109.47169 * 59.99532 * 7 5 3 9 9 H 1.48493 * 109.47535 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46995 * 300.00095 * 7 5 3 11 11 C 1.46501 * 119.99901 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47425 * 89.99938 * 11 2 1 13 13 N 1.46491 * 109.47341 * 180.02562 * 12 11 2 14 14 C 1.34782 * 119.99782 * 180.27576 * 13 12 11 15 15 O 1.21494 * 120.00304 * 359.72835 * 14 13 12 16 16 C 1.48332 * 119.99938 * 179.72460 * 14 13 12 17 17 C 1.42271 * 126.93867 * 179.70992 * 16 14 13 18 18 C 1.35315 * 103.92002 * 179.88544 * 17 16 14 19 19 C 1.50702 * 126.66467 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.50117 * 189.07162 * 19 18 17 21 21 C 1.52998 * 117.50271 * 120.40893 * 19 18 17 22 22 O 1.34008 * 106.66847 * 0.37275 * 18 17 16 23 23 N 1.20896 * 111.84948 * 359.74481 * 22 18 17 24 24 H 1.09002 * 109.46826 * 275.12357 * 1 2 3 25 25 H 1.08993 * 109.46837 * 35.12497 * 1 2 3 26 26 H 1.08998 * 109.47261 * 155.12683 * 1 2 3 27 27 H 0.97001 * 119.99975 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47042 * 329.99912 * 11 2 1 29 29 H 1.08998 * 109.47082 * 210.00094 * 11 2 1 30 30 H 1.09006 * 109.46708 * 59.99537 * 12 11 2 31 31 H 1.09001 * 109.46770 * 300.00520 * 12 11 2 32 32 H 0.96994 * 120.00337 * 359.97438 * 13 12 11 33 33 H 1.08005 * 128.03968 * 0.02562 * 17 16 14 34 34 H 1.09007 * 115.54926 * 334.74239 * 19 18 17 35 35 H 1.09005 * 117.50097 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.50197 * 145.02162 * 20 19 18 37 37 H 1.08999 * 117.50160 * 214.97974 * 21 19 18 38 38 H 1.09007 * 117.49605 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1457 7 14 2.3159 4.0073 0.1455 8 1 2.4197 4.2279 -1.3194 9 1 1.4744 5.0718 0.7486 10 1 3.6721 4.0475 0.7493 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 7 3.1844 -2.9801 -1.4411 14 6 3.5261 -3.5615 -2.6081 15 8 3.2228 -3.0357 -3.6605 16 6 4.2725 -4.8433 -2.6075 17 6 4.7003 -5.5841 -3.7443 18 6 5.3305 -6.6581 -3.2147 19 6 5.9849 -7.7828 -3.9749 20 6 6.4518 -8.9995 -3.1735 21 6 7.4788 -8.0174 -3.7424 22 8 5.2527 -6.5313 -1.8829 23 7 4.6660 -5.5247 -1.5603 24 1 -0.3633 0.0918 1.0236 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3634 -0.9323 -0.4322 27 1 -0.0149 3.0662 1.4749 28 1 1.6084 -2.0282 0.5148 29 1 3.1499 -1.1382 0.5143 30 1 3.0416 -0.9516 -1.9559 31 1 1.5001 -1.8416 -1.9555 32 1 3.4270 -3.3997 -0.6010 33 1 4.5575 -5.3438 -4.7876 34 1 5.5980 -7.9595 -4.9786 35 1 6.2860 -8.9864 -2.0962 36 1 6.3724 -9.9766 -3.6499 37 1 8.0747 -8.3488 -4.5928 38 1 7.9884 -7.3579 -3.0398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480895898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:45 Heat of formation + Delta-G solvation = 77.014768 kcal Electronic energy + Delta-G solvation = -20652.879861 eV Core-core repulsion = 17307.749309 eV Total energy + Delta-G solvation = -3345.130553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.29550 -39.42939 -37.84117 -36.12488 -34.32961 -34.10679 -31.84261 -31.24394 -28.34916 -25.89827 -25.23336 -24.06941 -23.19459 -22.84057 -22.16130 -20.70912 -19.68817 -18.02865 -17.82530 -16.95003 -16.61793 -16.20607 -15.67183 -15.12429 -14.83344 -14.72046 -13.83757 -13.73578 -13.71320 -13.28851 -12.80267 -12.53656 -12.36751 -12.09258 -11.90768 -11.62422 -11.20584 -10.98505 -10.92574 -10.84829 -10.66271 -10.59262 -10.38615 -10.20074 -9.98360 -9.88925 -9.49940 -8.83969 -8.56939 -6.81241 -5.74809 -3.23222 0.92307 1.44042 2.58812 3.04343 3.19348 3.32776 3.39443 3.44427 3.46382 3.82119 4.01193 4.26667 4.39850 4.49908 4.66564 4.88076 5.01182 5.13617 5.18920 5.34639 5.38560 5.51059 5.58967 5.60138 5.64700 5.77211 5.86337 6.22019 6.47244 6.60554 6.73770 6.82478 7.35406 7.51262 7.70388 7.79151 7.84171 8.19623 8.36902 9.20294 9.82355 10.30601 11.30079 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.002721 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.674518 B =10286.348336 C =10445.145868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.143 3.857 12 C 0.093 3.907 13 N -0.705 5.705 14 C 0.591 3.409 15 O -0.525 6.525 16 C -0.017 4.017 17 C -0.175 4.175 18 C -0.007 4.007 19 C -0.086 4.086 20 C -0.166 4.166 21 C -0.162 4.162 22 O 0.120 5.880 23 N -0.331 5.331 24 H 0.034 0.966 25 H 0.043 0.957 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.181 0.819 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.289 -22.738 -8.678 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.319 5.319 3 C -0.391 4.391 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.014 3.986 12 C -0.032 4.032 13 N -0.356 5.356 14 C 0.373 3.627 15 O -0.400 6.400 16 C -0.177 4.177 17 C -0.198 4.198 18 C -0.069 4.069 19 C -0.105 4.105 20 C -0.203 4.203 21 C -0.199 4.199 22 O 0.045 5.955 23 N -0.032 5.032 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.238 0.762 33 H 0.199 0.801 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.744 -21.886 -8.001 25.660 hybrid contribution 0.364 0.889 -0.626 1.147 sum 11.107 -20.997 -8.627 25.272 Atomic orbital electron populations 1.20851 0.82236 0.95640 0.99685 1.43783 1.01979 1.00242 1.85902 1.19152 0.98389 0.85495 1.36053 0.91353 1.25039 0.97827 0.98649 0.97941 1.70061 1.19356 1.27461 1.38199 0.86298 0.78436 0.83538 0.78041 1.20950 1.21566 1.20866 1.20838 0.96947 0.89297 0.91480 1.22583 0.95681 0.82314 1.02660 1.45989 1.56805 1.25056 1.07718 1.16907 0.79094 0.81855 0.84819 1.90805 1.54628 1.63369 1.31177 1.23661 1.04463 0.99478 0.90083 1.22349 1.02248 0.93871 1.01312 1.23406 1.01921 0.98541 0.83079 1.20444 0.97304 0.93644 0.99139 1.23110 1.02404 0.93971 1.00824 1.23148 0.90197 1.02594 1.03981 1.84741 1.54959 1.32828 1.22971 1.74190 1.09596 0.96135 1.23305 0.94798 0.93868 0.98227 0.93599 0.93922 0.92781 0.91064 0.91742 0.76228 0.80144 0.84160 0.87658 0.87486 0.87387 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.19 2.92 -181.12 -0.53 -15.71 16 3 C -0.26 -7.27 9.65 -15.06 -0.15 -7.41 16 4 H 0.07 1.86 7.86 -52.48 -0.41 1.44 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.03 16 6 N -0.91 -26.63 10.71 55.49 0.59 -26.03 16 7 Si 0.91 22.12 29.57 -169.99 -5.03 17.10 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.14 2.92 5.76 -4.04 -0.02 2.90 16 12 C 0.09 1.76 6.00 -4.05 -0.02 1.74 16 13 N -0.70 -11.43 5.55 -61.10 -0.34 -11.77 16 14 C 0.59 9.95 7.85 -12.10 -0.09 9.86 16 15 O -0.52 -10.41 16.95 5.37 0.09 -10.32 16 16 C -0.02 -0.24 7.19 -82.53 -0.59 -0.84 16 17 C -0.18 -1.98 10.92 -39.07 -0.43 -2.40 16 18 C -0.01 -0.06 6.93 -35.35 -0.24 -0.31 16 19 C -0.09 -0.50 6.26 -91.77 -0.57 -1.07 16 20 C -0.17 -0.76 10.18 -26.70 -0.27 -1.03 16 21 C -0.16 -0.75 10.24 -26.70 -0.27 -1.03 16 22 O 0.12 1.33 10.96 17.27 0.19 1.52 16 23 N -0.33 -4.38 11.84 33.29 0.39 -3.98 16 24 H 0.03 0.90 7.34 -51.93 -0.38 0.52 16 25 H 0.04 1.15 7.34 -51.93 -0.38 0.77 16 26 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.40 5.73 8.23 -40.82 -0.34 5.39 16 33 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.54 8.01 -51.93 -0.42 0.12 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -32.59 333.05 -7.11 -39.70 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.28 Total: -0.47 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.23 Total: 4.97 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.12 Total: -57.51 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.28 Total: -8.80 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.59 -7.11 -39.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480895898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.712 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds