Wall clock time and date at job start Tue Mar 31 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 120.00339 * 2 1 4 4 H 1.08004 * 120.00333 * 203.04543 * 3 2 1 5 5 C 1.38817 * 119.99927 * 23.04396 * 3 2 1 6 6 N 1.31615 * 119.99830 * 12.92603 * 5 3 2 7 7 Si 1.86796 * 120.00227 * 192.93271 * 5 3 2 8 8 H 1.48506 * 109.47169 * 59.99532 * 7 5 3 9 9 H 1.48493 * 109.47535 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46995 * 300.00095 * 7 5 3 11 11 C 1.46501 * 119.99901 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47425 * 89.99938 * 11 2 1 13 13 N 1.46491 * 109.47341 * 180.02562 * 12 11 2 14 14 C 1.34782 * 119.99782 * 180.27576 * 13 12 11 15 15 O 1.21494 * 120.00304 * 359.72835 * 14 13 12 16 16 C 1.48332 * 119.99938 * 179.72460 * 14 13 12 17 17 C 1.42271 * 126.93867 * 179.70992 * 16 14 13 18 18 C 1.35315 * 103.92002 * 179.88544 * 17 16 14 19 19 C 1.50702 * 126.66467 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.50117 * 189.07162 * 19 18 17 21 21 C 1.52998 * 117.50271 * 120.40893 * 19 18 17 22 22 O 1.34008 * 106.66847 * 0.37275 * 18 17 16 23 23 N 1.20896 * 111.84948 * 359.74481 * 22 18 17 24 24 H 1.09002 * 109.46826 * 275.12357 * 1 2 3 25 25 H 1.08993 * 109.46837 * 35.12497 * 1 2 3 26 26 H 1.08998 * 109.47261 * 155.12683 * 1 2 3 27 27 H 0.97001 * 119.99975 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47042 * 329.99912 * 11 2 1 29 29 H 1.08998 * 109.47082 * 210.00094 * 11 2 1 30 30 H 1.09006 * 109.46708 * 59.99537 * 12 11 2 31 31 H 1.09001 * 109.46770 * 300.00520 * 12 11 2 32 32 H 0.96994 * 120.00337 * 359.97438 * 13 12 11 33 33 H 1.08005 * 128.03968 * 0.02562 * 17 16 14 34 34 H 1.09007 * 115.54926 * 334.74239 * 19 18 17 35 35 H 1.09005 * 117.50097 * 359.97438 * 20 19 18 36 36 H 1.08996 * 117.50197 * 145.02162 * 20 19 18 37 37 H 1.08999 * 117.50160 * 214.97974 * 21 19 18 38 38 H 1.09007 * 117.49605 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1457 7 14 2.3159 4.0073 0.1455 8 1 2.4197 4.2279 -1.3194 9 1 1.4744 5.0718 0.7486 10 1 3.6721 4.0475 0.7493 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4417 13 7 3.1844 -2.9801 -1.4411 14 6 3.5261 -3.5615 -2.6081 15 8 3.2228 -3.0357 -3.6605 16 6 4.2725 -4.8433 -2.6075 17 6 4.7003 -5.5841 -3.7443 18 6 5.3305 -6.6581 -3.2147 19 6 5.9849 -7.7828 -3.9749 20 6 6.4518 -8.9995 -3.1735 21 6 7.4788 -8.0174 -3.7424 22 8 5.2527 -6.5313 -1.8829 23 7 4.6660 -5.5247 -1.5603 24 1 -0.3633 0.0918 1.0236 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3634 -0.9323 -0.4322 27 1 -0.0149 3.0662 1.4749 28 1 1.6084 -2.0282 0.5148 29 1 3.1499 -1.1382 0.5143 30 1 3.0416 -0.9516 -1.9559 31 1 1.5001 -1.8416 -1.9555 32 1 3.4270 -3.3997 -0.6010 33 1 4.5575 -5.3438 -4.7876 34 1 5.5980 -7.9595 -4.9786 35 1 6.2860 -8.9864 -2.0962 36 1 6.3724 -9.9766 -3.6499 37 1 8.0747 -8.3488 -4.5928 38 1 7.9884 -7.3579 -3.0398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480895898.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:44 Heat of formation + Delta-G solvation = 55.815629 kcal Electronic energy + Delta-G solvation = -20653.799125 eV Core-core repulsion = 17307.749309 eV Total energy + Delta-G solvation = -3346.049816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.24677 -40.82346 -38.27152 -37.94590 -35.92857 -35.14560 -33.37677 -32.56232 -30.03813 -27.96283 -26.51605 -25.00698 -24.44417 -23.28899 -23.18983 -22.47457 -20.94295 -18.96603 -18.81031 -18.58935 -17.97429 -17.31570 -16.77612 -16.60577 -16.50997 -15.60603 -15.53732 -15.21583 -14.96044 -14.52339 -14.37645 -14.23969 -13.39144 -13.10803 -12.79941 -12.78284 -12.70531 -12.53950 -12.37969 -12.24195 -12.17690 -12.01124 -11.88744 -11.64253 -11.61849 -11.34776 -10.68944 -10.31285 -10.20998 -8.88390 -7.87848 -5.38918 -0.06567 0.53907 1.44643 1.47801 1.54161 1.69089 1.90219 1.94239 2.48538 2.77595 2.93124 3.25925 3.29990 3.69989 3.76405 3.91753 3.98963 4.04217 4.13354 4.20192 4.29581 4.47523 4.57851 4.77513 4.81203 4.84886 4.95122 4.98528 5.03353 5.15944 5.19152 5.28394 5.33774 5.58751 5.66570 6.21046 6.27351 6.82500 6.94828 7.09324 7.78529 8.21924 9.15354 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041126 B = 0.002721 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.674518 B =10286.348336 C =10445.145868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.615 5.615 3 C -0.271 4.271 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.281 1.281 9 H -0.291 1.291 10 H -0.273 1.273 11 C 0.147 3.853 12 C 0.114 3.886 13 N -0.697 5.697 14 C 0.592 3.408 15 O -0.560 6.560 16 C -0.041 4.041 17 C -0.188 4.188 18 C 0.014 3.986 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.157 4.157 22 O 0.129 5.871 23 N -0.343 5.343 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.032 0.968 27 H 0.250 0.750 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.415 0.585 33 H 0.194 0.806 34 H 0.164 0.836 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 -24.783 -9.491 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.338 5.338 3 C -0.401 4.401 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.798 3.202 8 H -0.207 1.207 9 H -0.217 1.217 10 H -0.199 1.199 11 C 0.019 3.981 12 C -0.012 4.012 13 N -0.349 5.349 14 C 0.377 3.623 15 O -0.437 6.437 16 C -0.199 4.199 17 C -0.211 4.211 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.197 4.197 21 C -0.194 4.194 22 O 0.051 5.949 23 N -0.043 5.043 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.211 0.789 34 H 0.181 0.819 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.391 -23.962 -8.795 28.374 hybrid contribution -0.063 1.353 -0.387 1.409 sum 12.328 -22.609 -9.182 27.340 Atomic orbital electron populations 1.20620 0.82371 0.96124 0.98084 1.44012 1.02320 1.01367 1.86131 1.19463 0.98592 0.86730 1.35347 0.91218 1.25819 0.98570 1.01983 0.98190 1.70215 1.20651 1.27926 1.39356 0.85299 0.77815 0.79300 0.77768 1.20689 1.21728 1.19895 1.20923 0.96956 0.87868 0.92324 1.22063 0.95119 0.82979 1.01067 1.45791 1.56486 1.24146 1.08442 1.17202 0.78528 0.82473 0.84120 1.90778 1.56074 1.64614 1.32274 1.23375 1.05810 0.98982 0.91683 1.22551 1.02979 0.94182 1.01382 1.23997 1.00208 0.98624 0.82041 1.20755 0.98127 0.93085 0.99847 1.23227 1.01503 0.94475 1.00478 1.23252 0.89499 1.02157 1.04477 1.84714 1.54125 1.31883 1.24165 1.74182 1.10021 0.96674 1.23401 0.96973 0.96510 0.94987 0.94045 0.91769 0.92387 0.93256 0.92665 0.74875 0.78927 0.81887 0.88402 0.85361 0.85296 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.69 8.98 127.77 1.15 9.84 16 2 N -0.62 -31.35 2.92 -726.93 -2.12 -33.47 16 3 C -0.27 -15.15 9.65 84.04 0.81 -14.34 16 4 H 0.07 3.79 7.86 -2.91 -0.02 3.76 16 5 C -0.05 -2.85 5.10 84.86 0.43 -2.42 16 6 N -0.94 -55.83 10.71 21.65 0.23 -55.60 16 7 Si 0.97 45.76 29.57 68.60 2.03 47.79 16 8 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 C 0.15 5.87 5.76 86.38 0.50 6.37 16 12 C 0.11 4.30 6.00 86.38 0.52 4.82 16 13 N -0.70 -22.33 5.55 -465.51 -2.59 -24.92 16 14 C 0.59 19.93 7.85 86.93 0.68 20.61 16 15 O -0.56 -22.46 16.95 -3.70 -0.06 -22.52 16 16 C -0.04 -1.12 7.19 42.96 0.31 -0.81 16 17 C -0.19 -4.01 10.92 22.60 0.25 -3.77 16 18 C 0.01 0.24 6.93 25.01 0.17 0.41 16 19 C -0.10 -0.85 6.26 -11.54 -0.07 -0.92 16 20 C -0.16 -0.96 10.18 30.62 0.31 -0.64 16 21 C -0.16 -0.98 10.24 30.62 0.31 -0.67 16 22 O 0.13 2.65 10.96 71.96 0.79 3.44 16 23 N -0.34 -8.74 11.84 -49.52 -0.59 -9.33 16 24 H 0.01 0.65 7.34 -2.39 -0.02 0.63 16 25 H 0.02 0.89 7.34 -2.39 -0.02 0.87 16 26 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 27 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 28 H 0.06 2.31 8.07 -2.38 -0.02 2.29 16 29 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 30 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.41 11.41 8.23 -92.71 -0.76 10.65 16 33 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 34 H 0.16 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.10 0.76 8.01 -2.38 -0.02 0.74 16 36 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.13 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -70.53 333.05 3.37 -67.16 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.31 Total: 8.96 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 5.37 Total: 18.49 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -5.06 Total: -123.32 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.73 Total: -19.08 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.53 3.37 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480895898.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.974 kcal (2) G-P(sol) polarization free energy of solvation -70.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds