Wall clock time and date at job start Tue Mar 31 2020 01:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00358 * 2 1 4 4 H 1.07994 * 120.00196 * 202.34433 * 3 2 1 5 5 C 1.38819 * 119.99655 * 22.34480 * 3 2 1 6 6 N 1.31620 * 119.99782 * 11.34759 * 5 3 2 7 7 Si 1.86792 * 120.00035 * 191.34272 * 5 3 2 8 8 H 1.48497 * 109.47099 * 89.99823 * 7 5 3 9 9 H 1.48495 * 109.47568 * 210.00077 * 7 5 3 10 10 H 1.48501 * 109.47247 * 330.00222 * 7 5 3 11 11 C 1.46507 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.52992 * 109.47184 * 270.00633 * 11 2 1 13 13 N 1.46507 * 109.47184 * 180.02562 * 12 11 2 14 14 C 1.34773 * 120.00208 * 179.72039 * 13 12 11 15 15 O 1.21610 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.47398 * 120.00302 * 179.97438 * 14 13 12 17 17 C 1.47103 * 128.56062 * 359.68217 * 16 14 13 18 18 N 1.30015 * 105.32646 * 179.86842 * 17 16 14 19 19 O 1.20660 * 112.30239 * 0.41893 * 18 17 16 20 20 C 1.33488 * 113.15464 * 359.71649 * 19 18 17 21 21 C 1.50700 * 126.82872 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.49667 * 8.77423 * 21 20 19 23 23 C 1.52994 * 117.49871 * 300.11624 * 21 20 19 24 24 H 1.08997 * 109.47412 * 274.20686 * 1 2 3 25 25 H 1.09004 * 109.46836 * 34.21397 * 1 2 3 26 26 H 1.09006 * 109.46769 * 154.20628 * 1 2 3 27 27 H 0.96998 * 119.99994 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46848 * 150.00211 * 11 2 1 29 29 H 1.09005 * 109.46933 * 30.00286 * 11 2 1 30 30 H 1.08998 * 109.47573 * 60.00022 * 12 11 2 31 31 H 1.09001 * 109.47158 * 299.99235 * 12 11 2 32 32 H 0.97003 * 119.99641 * 359.97438 * 13 12 11 33 33 H 1.08002 * 127.33632 * 359.97438 * 17 16 14 34 34 H 1.09001 * 115.55271 * 154.43907 * 21 20 19 35 35 H 1.08995 * 117.50202 * 0.02562 * 22 21 20 36 36 H 1.09002 * 117.49412 * 145.02278 * 22 21 20 37 37 H 1.09008 * 117.49596 * 214.98180 * 23 21 20 38 38 H 1.08996 * 117.50430 * 359.96700 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3367 4.0047 0.1689 8 1 1.8680 4.5631 -1.1248 9 1 1.9682 4.9302 1.2701 10 1 3.8123 3.8418 0.1321 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 7 3.1855 -2.9783 1.4438 14 6 3.5273 -3.5586 2.6111 15 8 3.2269 -3.0295 3.6641 16 6 4.2644 -4.8351 2.6117 17 6 4.7125 -5.6357 1.4619 18 7 5.3170 -6.6660 1.9752 19 8 5.3125 -6.6454 3.1816 20 6 4.6971 -5.5736 3.6860 21 6 4.5130 -5.2404 5.1442 22 6 5.2559 -6.1042 6.1654 23 6 3.7398 -6.2411 6.0053 24 1 -0.3634 0.0754 1.0248 25 1 -0.3633 0.8499 -0.5779 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0461 3.0774 1.4133 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0287 -0.5130 30 1 1.5000 -1.8400 1.9570 31 1 3.0415 -0.9501 1.9568 32 1 3.4280 -3.3987 0.6038 33 1 4.5712 -5.4139 0.4144 34 1 4.3933 -4.1814 5.3730 35 1 5.8781 -6.9131 5.7826 36 1 5.6245 -5.6135 7.0662 37 1 3.1115 -5.8404 6.8009 38 1 3.3637 -7.1401 5.5172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480931408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:52 Heat of formation + Delta-G solvation = 75.988517 kcal Electronic energy + Delta-G solvation = -21115.292040 eV Core-core repulsion = 17770.116985 eV Total energy + Delta-G solvation = -3345.175054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.08373 -39.30995 -37.60451 -36.07247 -34.26021 -33.76794 -31.76278 -31.29150 -28.32820 -25.92047 -25.01112 -24.26842 -23.00171 -22.67384 -21.15668 -20.73654 -20.10115 -17.99517 -17.84829 -16.85943 -16.68069 -15.87669 -15.49819 -15.00313 -14.73504 -14.71451 -14.01070 -13.69263 -13.56748 -13.19954 -12.57635 -12.41547 -12.31166 -11.90949 -11.79460 -11.41252 -11.24235 -10.90977 -10.88885 -10.75150 -10.62574 -10.55868 -10.31637 -10.01965 -9.98789 -9.81799 -9.39115 -8.69977 -8.58342 -6.85771 -5.77107 -3.24725 0.90374 1.62936 2.55878 3.27185 3.33662 3.38977 3.43716 3.44944 3.55700 4.00507 4.09251 4.33181 4.47648 4.53730 4.62108 4.93115 5.10318 5.31546 5.33886 5.37904 5.55608 5.59260 5.60805 5.77606 5.83468 5.85832 5.93677 6.23600 6.60829 6.67414 6.70158 6.91999 7.34274 7.68042 7.70595 7.77778 7.97128 8.33059 8.38696 9.18191 9.79981 10.27927 11.27852 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.003336 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.389243 B = 8392.058687 C = 8745.400251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.143 3.857 12 C 0.095 3.905 13 N -0.714 5.714 14 C 0.590 3.410 15 O -0.533 6.533 16 C -0.251 4.251 17 C 0.023 3.977 18 N -0.356 5.356 19 O 0.089 5.911 20 C 0.075 3.925 21 C -0.089 4.089 22 C -0.168 4.168 23 C -0.155 4.155 24 H 0.030 0.970 25 H 0.047 0.953 26 H -0.002 1.002 27 H 0.254 0.746 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.395 0.605 33 H 0.202 0.798 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 -17.695 4.707 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.015 3.985 12 C -0.030 4.030 13 N -0.364 5.364 14 C 0.375 3.625 15 O -0.412 6.412 16 C -0.259 4.259 17 C -0.160 4.160 18 N -0.062 5.062 19 O 0.029 5.971 20 C 0.011 3.989 21 C -0.107 4.107 22 C -0.205 4.205 23 C -0.192 4.192 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.228 0.772 33 H 0.219 0.781 34 H 0.172 0.828 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.812 -18.192 5.006 20.422 hybrid contribution 0.063 1.503 -0.538 1.597 sum 7.876 -16.689 4.468 18.988 Atomic orbital electron populations 1.20860 0.82104 0.95793 0.99515 1.43928 1.02081 1.00313 1.85495 1.19240 0.98206 0.85221 1.36498 0.91157 1.25070 0.97635 0.98703 0.98018 1.70068 1.17775 1.27281 1.39850 0.86209 0.78853 0.83838 0.77350 1.21415 1.21643 1.20429 1.21003 0.96435 0.88998 0.92073 1.22610 0.95722 0.82292 1.02392 1.45999 1.57730 1.25397 1.07292 1.16825 0.78799 0.82256 0.84650 1.90795 1.55046 1.64221 1.31099 1.22201 1.10771 1.00846 0.92041 1.26402 0.97459 0.90682 1.01412 1.73651 1.19983 1.22113 0.90445 1.84527 1.58137 1.38466 1.15944 1.23748 0.92788 0.86400 0.96000 1.20756 1.07835 1.00190 0.81967 1.23134 0.95062 1.02094 1.00183 1.23100 0.94785 0.99904 1.01461 0.95184 0.93383 0.98357 0.93591 0.93259 0.93913 0.91901 0.91039 0.77191 0.78091 0.82812 0.87837 0.87367 0.87158 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 9.01 59.85 0.54 4.47 16 2 N -0.60 -14.63 2.93 -181.12 -0.53 -15.16 16 3 C -0.26 -7.09 9.67 -15.06 -0.15 -7.23 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.91 -26.22 10.58 55.49 0.59 -25.63 16 7 Si 0.91 21.70 29.57 -169.99 -5.03 16.68 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.14 2.75 5.82 -4.04 -0.02 2.73 16 12 C 0.10 1.80 6.00 -4.04 -0.02 1.77 16 13 N -0.71 -10.55 5.55 -61.39 -0.34 -10.89 16 14 C 0.59 9.36 7.81 -12.53 -0.10 9.27 16 15 O -0.53 -10.32 15.33 5.27 0.08 -10.24 16 16 C -0.25 -3.28 6.47 -102.89 -0.67 -3.95 16 17 C 0.02 0.25 11.95 -14.73 -0.18 0.08 16 18 N -0.36 -4.33 12.01 31.81 0.38 -3.95 16 19 O 0.09 1.05 10.86 18.66 0.20 1.26 16 20 C 0.07 0.91 7.00 -34.63 -0.24 0.66 16 21 C -0.09 -0.94 5.74 -91.77 -0.53 -1.46 16 22 C -0.17 -1.27 10.19 -26.69 -0.27 -1.55 16 23 C -0.16 -1.28 10.24 -26.70 -0.27 -1.56 16 24 H 0.03 0.79 7.42 -51.93 -0.39 0.40 16 25 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 26 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 27 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.39 4.42 7.84 -40.82 -0.32 4.10 16 33 H 0.20 1.44 7.88 -52.49 -0.41 1.03 16 34 H 0.15 1.87 6.96 -51.93 -0.36 1.51 16 35 H 0.10 0.73 8.02 -51.93 -0.42 0.31 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -32.22 329.08 -6.84 -39.07 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.16 Total: 0.66 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.00 Total: 3.25 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.10 Total: -55.64 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.28 Total: -8.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.22 -6.84 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480931408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.055 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds