Wall clock time and date at job start Tue Mar 31 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00358 * 2 1 4 4 H 1.07994 * 120.00196 * 202.34433 * 3 2 1 5 5 C 1.38819 * 119.99655 * 22.34480 * 3 2 1 6 6 N 1.31620 * 119.99782 * 11.34759 * 5 3 2 7 7 Si 1.86792 * 120.00035 * 191.34272 * 5 3 2 8 8 H 1.48497 * 109.47099 * 89.99823 * 7 5 3 9 9 H 1.48495 * 109.47568 * 210.00077 * 7 5 3 10 10 H 1.48501 * 109.47247 * 330.00222 * 7 5 3 11 11 C 1.46507 * 120.00031 * 179.97438 * 2 1 3 12 12 C 1.52992 * 109.47184 * 270.00633 * 11 2 1 13 13 N 1.46507 * 109.47184 * 180.02562 * 12 11 2 14 14 C 1.34773 * 120.00208 * 179.72039 * 13 12 11 15 15 O 1.21610 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.47398 * 120.00302 * 179.97438 * 14 13 12 17 17 C 1.47103 * 128.56062 * 359.68217 * 16 14 13 18 18 N 1.30015 * 105.32646 * 179.86842 * 17 16 14 19 19 O 1.20660 * 112.30239 * 0.41893 * 18 17 16 20 20 C 1.33488 * 113.15464 * 359.71649 * 19 18 17 21 21 C 1.50700 * 126.82872 * 179.97438 * 20 19 18 22 22 C 1.53002 * 117.49667 * 8.77423 * 21 20 19 23 23 C 1.52994 * 117.49871 * 300.11624 * 21 20 19 24 24 H 1.08997 * 109.47412 * 274.20686 * 1 2 3 25 25 H 1.09004 * 109.46836 * 34.21397 * 1 2 3 26 26 H 1.09006 * 109.46769 * 154.20628 * 1 2 3 27 27 H 0.96998 * 119.99994 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.46848 * 150.00211 * 11 2 1 29 29 H 1.09005 * 109.46933 * 30.00286 * 11 2 1 30 30 H 1.08998 * 109.47573 * 60.00022 * 12 11 2 31 31 H 1.09001 * 109.47158 * 299.99235 * 12 11 2 32 32 H 0.97003 * 119.99641 * 359.97438 * 13 12 11 33 33 H 1.08002 * 127.33632 * 359.97438 * 17 16 14 34 34 H 1.09001 * 115.55271 * 154.43907 * 21 20 19 35 35 H 1.08995 * 117.50202 * 0.02562 * 22 21 20 36 36 H 1.09002 * 117.49412 * 145.02278 * 22 21 20 37 37 H 1.09008 * 117.49596 * 214.98180 * 23 21 20 38 38 H 1.08996 * 117.50430 * 359.96700 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3367 4.0047 0.1689 8 1 1.8680 4.5631 -1.1248 9 1 1.9682 4.9302 1.2701 10 1 3.8123 3.8418 0.1321 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4432 13 7 3.1855 -2.9783 1.4438 14 6 3.5273 -3.5586 2.6111 15 8 3.2269 -3.0295 3.6641 16 6 4.2644 -4.8351 2.6117 17 6 4.7125 -5.6357 1.4619 18 7 5.3170 -6.6660 1.9752 19 8 5.3125 -6.6454 3.1816 20 6 4.6971 -5.5736 3.6860 21 6 4.5130 -5.2404 5.1442 22 6 5.2559 -6.1042 6.1654 23 6 3.7398 -6.2411 6.0053 24 1 -0.3634 0.0754 1.0248 25 1 -0.3633 0.8499 -0.5779 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0461 3.0774 1.4133 28 1 3.1499 -1.1386 -0.5133 29 1 1.6084 -2.0287 -0.5130 30 1 1.5000 -1.8400 1.9570 31 1 3.0415 -0.9501 1.9568 32 1 3.4280 -3.3987 0.6038 33 1 4.5712 -5.4139 0.4144 34 1 4.3933 -4.1814 5.3730 35 1 5.8781 -6.9131 5.7826 36 1 5.6245 -5.6135 7.0662 37 1 3.1115 -5.8404 6.8009 38 1 3.3637 -7.1401 5.5172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480931408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:51 Heat of formation + Delta-G solvation = 54.938645 kcal Electronic energy + Delta-G solvation = -21116.204830 eV Core-core repulsion = 17770.116985 eV Total energy + Delta-G solvation = -3346.087845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.99426 -40.62936 -38.36263 -37.82018 -35.77250 -34.79562 -33.25224 -32.63992 -29.95126 -27.92991 -26.30529 -25.14871 -24.47282 -23.32981 -22.47700 -22.12555 -21.29578 -19.10537 -18.79666 -18.69149 -17.68815 -17.10341 -16.76920 -16.48116 -16.37529 -15.75660 -15.43711 -15.12863 -14.78813 -14.65472 -14.23112 -14.09472 -13.37245 -13.10828 -12.80816 -12.70292 -12.63816 -12.47490 -12.45991 -12.19571 -12.08370 -12.00870 -11.76605 -11.50857 -11.49532 -11.20241 -10.66197 -10.37800 -10.03222 -8.86498 -7.84750 -5.34412 -0.08382 0.72861 1.47610 1.48030 1.56986 1.59355 2.09672 2.14599 2.52305 2.80987 3.19062 3.21485 3.30993 3.40306 3.73985 3.81492 3.96538 4.03772 4.18511 4.25097 4.33561 4.53040 4.67215 4.72063 4.77260 4.85760 4.93371 5.06197 5.07123 5.15158 5.18457 5.33471 5.41839 5.63543 5.73363 6.31202 6.49583 7.05629 7.12657 7.16450 7.83830 8.25939 9.18824 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.003336 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.389243 B = 8392.058687 C = 8745.400251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.614 5.614 3 C -0.268 4.268 4 H 0.077 0.923 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.146 3.854 12 C 0.117 3.883 13 N -0.699 5.699 14 C 0.591 3.409 15 O -0.576 6.576 16 C -0.278 4.278 17 C 0.044 3.956 18 N -0.372 5.372 19 O 0.086 5.914 20 C 0.086 3.914 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.148 4.148 24 H -0.001 1.001 25 H 0.021 0.979 26 H 0.036 0.964 27 H 0.248 0.752 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.416 0.584 33 H 0.239 0.761 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.958 -19.465 3.777 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.337 5.337 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.210 1.210 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.019 3.981 12 C -0.009 4.009 13 N -0.350 5.350 14 C 0.378 3.622 15 O -0.457 6.457 16 C -0.286 4.286 17 C -0.139 4.139 18 N -0.080 5.080 19 O 0.030 5.970 20 C 0.022 3.978 21 C -0.140 4.140 22 C -0.182 4.182 23 C -0.185 4.185 24 H 0.018 0.982 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.254 0.746 33 H 0.255 0.745 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.252 -20.025 4.052 22.428 hybrid contribution -0.336 1.941 -0.227 1.983 sum 8.916 -18.084 3.824 20.523 Atomic orbital electron populations 1.20615 0.82428 0.96513 0.97539 1.44167 1.02360 1.01585 1.85578 1.19619 0.98433 0.86421 1.35316 0.90521 1.25843 0.98403 1.02075 0.98496 1.70244 1.19275 1.27548 1.41444 0.85226 0.78468 0.79694 0.76818 1.20974 1.22462 1.19243 1.21156 0.97272 0.87616 0.92104 1.22005 0.94270 0.83139 1.01528 1.45637 1.57103 1.23995 1.08313 1.17133 0.78213 0.82834 0.84013 1.90778 1.56728 1.65570 1.32619 1.21927 1.12487 1.00410 0.93746 1.26908 0.95446 0.89139 1.02359 1.73647 1.20991 1.22838 0.90510 1.84534 1.58145 1.38211 1.16064 1.24040 0.91214 0.85963 0.96570 1.20751 1.11337 0.99836 0.82062 1.23264 0.94705 1.00938 0.99262 1.23221 0.95660 0.98960 1.00680 0.98243 0.95986 0.94521 0.94282 0.91560 0.90533 0.94340 0.94746 0.74647 0.74458 0.84938 0.86903 0.85701 0.86267 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.46 9.01 127.77 1.15 9.61 16 2 N -0.61 -29.84 2.93 -726.92 -2.13 -31.96 16 3 C -0.27 -14.42 9.67 84.04 0.81 -13.61 16 4 H 0.08 3.95 7.84 -2.91 -0.02 3.93 16 5 C -0.05 -2.96 5.13 84.86 0.44 -2.52 16 6 N -0.94 -55.84 10.58 21.65 0.23 -55.61 16 7 Si 0.97 44.96 29.57 68.60 2.03 46.99 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 C 0.15 5.29 5.82 86.38 0.50 5.79 16 12 C 0.12 4.41 6.00 86.38 0.52 4.93 16 13 N -0.70 -19.71 5.55 -466.40 -2.59 -22.30 16 14 C 0.59 18.58 7.81 86.66 0.68 19.26 16 15 O -0.58 -22.96 15.33 -4.06 -0.06 -23.03 16 16 C -0.28 -6.94 6.47 -18.75 -0.12 -7.06 16 17 C 0.04 0.84 11.95 87.29 1.04 1.89 16 18 N -0.37 -8.19 12.01 -54.19 -0.65 -8.84 16 19 O 0.09 1.91 10.86 77.03 0.84 2.74 16 20 C 0.09 2.02 7.00 25.48 0.18 2.20 16 21 C -0.12 -2.50 5.74 -11.54 -0.07 -2.57 16 22 C -0.14 -1.94 10.19 30.62 0.31 -1.63 16 23 C -0.15 -2.25 10.24 30.62 0.31 -1.94 16 24 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 25 H 0.02 1.14 7.19 -2.39 -0.02 1.13 16 26 H 0.04 1.47 7.84 -2.38 -0.02 1.45 16 27 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 29 H 0.08 2.30 7.86 -2.38 -0.02 2.28 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.42 8.07 7.84 -92.71 -0.73 7.34 16 33 H 0.24 2.39 7.88 -2.91 -0.02 2.36 16 34 H 0.13 3.36 6.96 -2.39 -0.02 3.35 16 35 H 0.11 1.32 8.02 -2.39 -0.02 1.30 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -71.68 329.08 3.78 -67.90 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.35 Total: 9.75 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.76 Total: 14.35 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -5.14 Total: -118.71 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.77 Total: -20.28 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.68 3.78 -67.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480931408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.843 kcal (2) G-P(sol) polarization free energy of solvation -71.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds