Wall clock time and date at job start Tue Mar 31 2020 01:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99558 * 2 1 4 4 C 1.52997 * 109.46957 * 269.99840 * 3 2 1 5 5 N 1.46506 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00165 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99813 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99904 * 180.02562 * 6 5 4 9 9 N 1.31611 * 119.99929 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99650 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47097 * 60.00152 * 10 8 6 12 12 H 1.48494 * 109.46941 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46790 * 300.00084 * 10 8 6 14 14 C 1.34770 * 120.00087 * 180.02562 * 2 1 3 15 15 O 1.21553 * 119.99709 * 175.03783 * 14 2 1 16 16 C 1.47883 * 120.00271 * 355.03033 * 14 2 1 17 17 C 1.36300 * 119.74984 * 87.67530 * 16 14 2 18 18 C 1.40406 * 119.90079 * 179.97438 * 17 16 14 19 19 C 1.36112 * 119.41974 * 359.97438 * 18 17 16 20 20 C 1.41241 * 119.50486 * 0.02562 * 19 18 17 21 21 O 1.21970 * 119.95306 * 180.02562 * 20 19 18 22 22 N 1.34667 * 120.08937 * 359.74391 * 20 19 18 23 23 C 1.46497 * 119.70422 * 180.25255 * 22 20 19 24 24 H 1.08997 * 109.47312 * 95.15147 * 1 2 3 25 25 H 1.09008 * 109.47135 * 215.14809 * 1 2 3 26 26 H 1.08996 * 109.47562 * 335.14388 * 1 2 3 27 27 H 1.09004 * 109.47203 * 30.00447 * 3 2 1 28 28 H 1.09005 * 109.46802 * 149.99841 * 3 2 1 29 29 H 1.08991 * 109.47332 * 300.00343 * 4 3 2 30 30 H 1.09000 * 109.46947 * 60.00473 * 4 3 2 31 31 H 0.97008 * 119.99773 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99928 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04913 * 359.97438 * 17 16 14 34 34 H 1.08002 * 120.28763 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.24887 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47286 * 265.10249 * 23 22 20 37 37 H 1.09003 * 109.47164 * 25.09810 * 23 22 20 38 38 H 1.09001 * 109.47486 * 145.10092 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1854 2.9790 -1.4425 6 6 3.5283 3.5717 -2.6284 7 1 3.2580 3.1042 -3.5636 8 6 4.2232 4.7733 -2.6283 9 7 4.5530 5.3427 -1.4885 10 14 4.6903 5.5821 -4.2461 11 1 3.4609 5.8787 -5.0243 12 1 5.4218 6.8456 -3.9747 13 1 5.5601 4.6646 -5.0251 14 6 2.1389 -1.1671 -0.0005 15 8 3.3510 -1.1690 -0.0916 16 6 1.4037 -2.4455 0.1098 17 6 0.9373 -3.0568 -1.0155 18 6 0.2393 -4.2710 -0.9145 19 6 0.0366 -4.8255 0.3119 20 6 0.5307 -4.1707 1.4617 21 8 0.3540 -4.6606 2.5647 22 7 1.2015 -3.0092 1.3414 23 6 1.7151 -2.3401 2.5391 24 1 -0.3634 -0.0923 -1.0235 25 1 -0.3634 -0.8403 0.5917 26 1 -0.3634 0.9324 0.4319 27 1 1.6083 2.0285 0.5139 28 1 3.1499 1.1385 0.5139 29 1 3.0414 0.9509 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 3.4284 3.3987 -0.6023 32 1 5.0389 6.1822 -1.4884 33 1 1.1043 -2.6080 -1.9835 34 1 -0.1326 -4.7609 -1.8022 35 1 -0.4989 -5.7588 0.4052 36 1 0.9959 -1.5929 2.8745 37 1 1.8694 -3.0759 3.3284 38 1 2.6623 -1.8537 2.3057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481278136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:16 Heat of formation + Delta-G solvation = -8.363890 kcal Electronic energy + Delta-G solvation = -21548.016445 eV Core-core repulsion = 18199.183596 eV Total energy + Delta-G solvation = -3348.832849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82358 -39.81136 -37.05099 -36.19548 -34.93159 -34.45634 -31.64678 -30.53836 -28.38539 -27.95718 -26.86456 -25.05610 -23.52311 -22.94706 -21.71929 -20.03745 -18.07424 -17.68635 -17.37340 -17.16952 -16.67325 -15.95318 -15.60048 -15.19111 -14.95126 -14.55614 -14.07523 -13.64441 -13.62222 -13.37577 -13.16861 -13.02670 -12.95051 -12.69018 -12.54934 -12.32489 -12.03172 -11.41971 -11.10129 -10.96065 -10.74278 -10.66408 -10.42339 -10.18770 -10.03093 -9.77982 -8.92104 -8.84181 -8.33755 -6.99645 -5.80806 -3.10710 0.33404 1.46488 1.79981 2.46376 2.77103 3.27806 3.42276 3.46661 3.47744 3.85837 4.27783 4.55316 4.57235 4.80183 4.83852 4.90514 4.95495 5.07868 5.17183 5.29947 5.34520 5.47303 5.53472 5.57800 5.63454 5.68166 5.87693 5.88832 5.91074 6.05485 6.32995 6.58433 6.67736 6.74483 7.07149 7.65230 7.68329 7.74270 8.37302 9.48485 10.02990 10.37838 11.41936 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.003337 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.009366 B = 8389.703779 C = 8683.170878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.595 5.595 3 C 0.107 3.893 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.933 5.933 10 Si 0.910 3.090 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.553 3.447 15 O -0.502 6.502 16 C 0.136 3.864 17 C -0.190 4.190 18 C -0.017 4.017 19 C -0.230 4.230 20 C 0.516 3.484 21 O -0.550 6.550 22 N -0.484 5.484 23 C 0.051 3.949 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.384 0.616 32 H 0.257 0.743 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -16.864 4.264 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.328 5.328 3 C -0.015 4.015 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.208 4.208 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.336 3.664 15 O -0.375 6.375 16 C 0.025 3.975 17 C -0.214 4.214 18 C -0.038 4.038 19 C -0.252 4.252 20 C 0.317 3.683 21 O -0.432 6.432 22 N -0.198 5.198 23 C -0.090 4.090 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.533 -17.078 4.817 21.163 hybrid contribution 0.298 0.675 -0.782 1.075 sum -11.234 -16.403 4.035 20.287 Atomic orbital electron populations 1.21912 0.78818 1.03380 1.02662 1.47825 1.07455 1.05856 1.71643 1.21909 0.97457 0.82258 0.99878 1.20910 0.95390 0.89656 0.92704 1.42188 1.67104 1.21568 1.06659 1.19148 1.29729 1.02476 0.85895 0.91190 1.24751 1.01085 0.98001 0.96974 1.69642 1.44790 1.19673 1.24053 0.86232 0.78158 0.78667 0.82919 1.21207 1.21617 1.21175 1.17979 0.87134 0.82890 0.78391 1.90940 1.12635 1.86193 1.47773 1.20366 0.96420 0.94615 0.86101 1.20781 1.04747 0.98400 0.97441 1.21406 0.91500 0.92639 0.98277 1.22315 1.07712 1.03629 0.91575 1.17322 0.79775 0.79876 0.91289 1.90943 1.59908 1.64542 1.27840 1.45497 1.46201 1.21441 1.06617 1.22281 1.00604 0.99025 0.87117 0.91519 0.91811 0.89761 0.89669 0.89431 0.95727 0.96164 0.78235 0.93362 0.83066 0.83920 0.82994 0.90235 0.87966 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.27 59.85 0.61 1.26 16 2 N -0.59 -7.32 2.87 -182.67 -0.52 -7.85 16 3 C 0.11 1.63 5.52 -4.04 -0.02 1.60 16 4 C 0.14 2.79 6.58 -4.04 -0.03 2.77 16 5 N -0.73 -18.29 5.60 -59.91 -0.34 -18.62 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 9 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 10 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 14 C 0.55 7.49 5.45 -12.31 -0.07 7.42 16 15 O -0.50 -8.90 16.57 5.32 0.09 -8.82 16 16 C 0.14 1.52 4.54 -82.33 -0.37 1.14 16 17 C -0.19 -1.71 9.70 -39.46 -0.38 -2.10 16 18 C -0.02 -0.12 10.08 -39.53 -0.40 -0.52 16 19 C -0.23 -2.14 10.00 -39.21 -0.39 -2.53 16 20 C 0.52 6.38 7.43 -15.17 -0.11 6.27 16 21 O -0.55 -8.52 16.57 4.95 0.08 -8.44 16 22 N -0.48 -5.53 3.02 -122.80 -0.37 -5.90 16 23 C 0.05 0.52 9.92 59.85 0.59 1.11 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.48 6.99 -51.92 -0.36 0.12 16 26 H 0.08 0.63 7.83 -51.93 -0.41 0.23 16 27 H 0.09 1.16 7.86 -51.93 -0.41 0.75 16 28 H 0.09 1.47 7.50 -51.93 -0.39 1.08 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.38 9.97 7.67 -40.82 -0.31 9.65 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.04 7.25 -51.93 -0.38 0.67 16 38 H 0.09 0.94 6.97 -51.93 -0.36 0.57 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -35.12 328.51 -6.35 -41.47 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.12 Total: 4.11 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.81 Total: 9.10 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.51 Total: -59.60 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.17 Total: -17.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.12 -6.35 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481278136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.102 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds