Wall clock time and date at job start Tue Mar 31 2020 01:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99558 * 2 1 4 4 C 1.52997 * 109.46957 * 269.99840 * 3 2 1 5 5 N 1.46506 * 109.46957 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00165 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99813 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99904 * 180.02562 * 6 5 4 9 9 N 1.31611 * 119.99929 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99650 * 180.02562 * 8 6 5 11 11 H 1.48491 * 109.47097 * 60.00152 * 10 8 6 12 12 H 1.48494 * 109.46941 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46790 * 300.00084 * 10 8 6 14 14 C 1.34770 * 120.00087 * 180.02562 * 2 1 3 15 15 O 1.21553 * 119.99709 * 175.03783 * 14 2 1 16 16 C 1.47883 * 120.00271 * 355.03033 * 14 2 1 17 17 C 1.36300 * 119.74984 * 87.67530 * 16 14 2 18 18 C 1.40406 * 119.90079 * 179.97438 * 17 16 14 19 19 C 1.36112 * 119.41974 * 359.97438 * 18 17 16 20 20 C 1.41241 * 119.50486 * 0.02562 * 19 18 17 21 21 O 1.21970 * 119.95306 * 180.02562 * 20 19 18 22 22 N 1.34667 * 120.08937 * 359.74391 * 20 19 18 23 23 C 1.46497 * 119.70422 * 180.25255 * 22 20 19 24 24 H 1.08997 * 109.47312 * 95.15147 * 1 2 3 25 25 H 1.09008 * 109.47135 * 215.14809 * 1 2 3 26 26 H 1.08996 * 109.47562 * 335.14388 * 1 2 3 27 27 H 1.09004 * 109.47203 * 30.00447 * 3 2 1 28 28 H 1.09005 * 109.46802 * 149.99841 * 3 2 1 29 29 H 1.08991 * 109.47332 * 300.00343 * 4 3 2 30 30 H 1.09000 * 109.46947 * 60.00473 * 4 3 2 31 31 H 0.97008 * 119.99773 * 0.02562 * 5 4 3 32 32 H 0.97000 * 119.99928 * 179.97438 * 9 8 6 33 33 H 1.07995 * 120.04913 * 359.97438 * 17 16 14 34 34 H 1.08002 * 120.28763 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.24887 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.47286 * 265.10249 * 23 22 20 37 37 H 1.09003 * 109.47164 * 25.09810 * 23 22 20 38 38 H 1.09001 * 109.47486 * 145.10092 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1854 2.9790 -1.4425 6 6 3.5283 3.5717 -2.6284 7 1 3.2580 3.1042 -3.5636 8 6 4.2232 4.7733 -2.6283 9 7 4.5530 5.3427 -1.4885 10 14 4.6903 5.5821 -4.2461 11 1 3.4609 5.8787 -5.0243 12 1 5.4218 6.8456 -3.9747 13 1 5.5601 4.6646 -5.0251 14 6 2.1389 -1.1671 -0.0005 15 8 3.3510 -1.1690 -0.0916 16 6 1.4037 -2.4455 0.1098 17 6 0.9373 -3.0568 -1.0155 18 6 0.2393 -4.2710 -0.9145 19 6 0.0366 -4.8255 0.3119 20 6 0.5307 -4.1707 1.4617 21 8 0.3540 -4.6606 2.5647 22 7 1.2015 -3.0092 1.3414 23 6 1.7151 -2.3401 2.5391 24 1 -0.3634 -0.0923 -1.0235 25 1 -0.3634 -0.8403 0.5917 26 1 -0.3634 0.9324 0.4319 27 1 1.6083 2.0285 0.5139 28 1 3.1499 1.1385 0.5139 29 1 3.0414 0.9509 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 3.4284 3.3987 -0.6023 32 1 5.0389 6.1822 -1.4884 33 1 1.1043 -2.6080 -1.9835 34 1 -0.1326 -4.7609 -1.8022 35 1 -0.4989 -5.7588 0.4052 36 1 0.9959 -1.5929 2.8745 37 1 1.8694 -3.0759 3.3284 38 1 2.6623 -1.8537 2.3057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481278136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:15 Heat of formation + Delta-G solvation = -33.435270 kcal Electronic energy + Delta-G solvation = -21549.103622 eV Core-core repulsion = 18199.183596 eV Total energy + Delta-G solvation = -3349.920026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.70512 -40.87339 -38.02422 -37.48723 -36.16049 -35.68342 -33.45792 -31.59800 -29.81889 -28.76571 -27.79138 -26.37915 -25.01303 -23.77659 -23.26920 -21.10270 -19.31139 -18.95474 -18.52134 -18.07644 -17.77890 -16.99988 -16.76856 -16.38966 -16.18163 -15.63739 -15.40791 -15.15861 -15.11594 -14.53564 -14.46804 -14.10644 -13.78088 -13.51222 -13.40836 -13.09786 -13.05540 -12.94452 -12.79623 -12.76013 -12.31911 -12.16436 -11.89321 -11.69396 -11.15428 -11.02729 -10.95654 -9.94970 -9.18272 -9.05633 -7.97213 -5.27591 -0.42870 0.66793 0.82130 1.45912 1.49798 1.51378 1.57601 1.82909 2.48565 2.55977 2.95732 3.36763 3.50379 3.90530 3.98438 4.03795 4.05829 4.16273 4.18775 4.20205 4.26284 4.36140 4.52971 4.54891 4.57802 4.80755 4.85672 4.96137 4.99088 5.07105 5.19249 5.30275 5.38175 5.47649 5.84817 6.03297 6.24318 6.69189 6.80979 7.31063 8.02920 8.27092 9.25866 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038346 B = 0.003337 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.009366 B = 8389.703779 C = 8683.170878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.121 3.879 4 C 0.147 3.853 5 N -0.744 5.744 6 C -0.251 4.251 7 H 0.075 0.925 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.975 3.025 11 H -0.273 1.273 12 H -0.294 1.294 13 H -0.280 1.280 14 C 0.556 3.444 15 O -0.554 6.554 16 C 0.114 3.886 17 C -0.171 4.171 18 C 0.004 3.996 19 C -0.235 4.235 20 C 0.502 3.498 21 O -0.595 6.595 22 N -0.485 5.485 23 C 0.051 3.949 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.004 0.996 30 H 0.035 0.965 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 -17.729 2.468 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.319 5.319 3 C -0.002 4.002 4 C 0.019 3.981 5 N -0.387 5.387 6 C -0.382 4.382 7 H 0.093 0.907 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.804 3.196 11 H -0.199 1.199 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.342 3.658 15 O -0.431 6.431 16 C 0.005 3.995 17 C -0.194 4.194 18 C -0.017 4.017 19 C -0.257 4.257 20 C 0.306 3.694 21 O -0.481 6.481 22 N -0.198 5.198 23 C -0.090 4.090 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.053 0.947 31 H 0.208 0.792 32 H 0.062 0.938 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.187 0.813 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.529 -17.964 2.991 22.687 hybrid contribution 0.856 0.886 -0.273 1.262 sum -12.673 -17.078 2.718 21.439 Atomic orbital electron populations 1.22190 0.76050 1.04847 1.04068 1.47836 1.08953 1.04483 1.70654 1.21565 0.97600 0.84107 0.96916 1.20976 0.94667 0.86926 0.95536 1.42380 1.67635 1.23107 1.05587 1.19554 1.29049 1.02581 0.87038 0.90720 1.25590 1.01683 0.98900 1.00275 1.69796 1.45914 1.19962 1.26113 0.85190 0.78067 0.77296 0.79077 1.19893 1.22018 1.20649 1.18306 0.86552 0.83835 0.77151 1.90913 1.14984 1.87032 1.50143 1.20127 0.98441 0.94205 0.86764 1.21189 1.02662 0.98381 0.97211 1.21782 0.89547 0.91324 0.99034 1.22501 1.07836 1.04225 0.91122 1.17860 0.79814 0.79922 0.91764 1.90916 1.62017 1.65653 1.29485 1.45486 1.46036 1.21388 1.06881 1.22287 1.00637 0.99155 0.86954 0.90044 0.90484 0.88288 0.87521 0.91507 0.97749 0.94702 0.79188 0.93823 0.81432 0.79500 0.81311 0.88571 0.88516 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 10.27 127.77 1.31 2.31 16 2 N -0.59 -13.71 2.87 -850.14 -2.44 -16.15 16 3 C 0.12 3.63 5.52 86.38 0.48 4.11 16 4 C 0.15 5.70 6.58 86.38 0.57 6.27 16 5 N -0.74 -37.41 5.60 -343.46 -1.92 -39.34 16 6 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 7 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 8 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 9 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 10 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.56 14.80 5.45 86.80 0.47 15.27 16 15 O -0.55 -20.14 16.57 -3.88 -0.06 -20.21 16 16 C 0.11 2.39 4.54 40.45 0.18 2.57 16 17 C -0.17 -2.53 9.70 22.35 0.22 -2.31 16 18 C 0.00 0.04 10.08 22.30 0.22 0.27 16 19 C -0.24 -3.74 10.00 22.51 0.23 -3.52 16 20 C 0.50 12.00 7.43 85.00 0.63 12.64 16 21 O -0.59 -18.57 16.57 -5.22 -0.09 -18.65 16 22 N -0.48 -10.75 3.02 -660.60 -1.99 -12.74 16 23 C 0.05 1.05 9.92 127.77 1.27 2.32 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 0.95 6.99 -2.38 -0.02 0.93 16 26 H 0.10 1.18 7.83 -2.39 -0.02 1.16 16 27 H 0.11 2.76 7.86 -2.38 -0.02 2.74 16 28 H 0.07 2.31 7.50 -2.38 -0.02 2.29 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.38 19.84 7.67 -92.70 -0.71 19.13 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.19 0.40 8.06 -2.91 -0.02 0.37 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.10 2.08 7.25 -2.39 -0.02 2.07 16 38 H 0.08 1.75 6.97 -2.39 -0.02 1.73 16 Total: -1.00 -77.79 328.51 3.05 -74.74 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.36 Total: 19.91 kcal Atomic # 6 Polarization: 16.29 SS G_CDS: 6.89 Total: 23.17 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.08 Total: -126.56 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.15 Total: -38.86 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.79 3.05 -74.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481278136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.304 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds