Wall clock time and date at job start Tue Mar 31 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00396 * 2 1 4 4 C 1.53003 * 109.47058 * 270.00256 * 3 2 1 5 5 C 1.53001 * 109.47266 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47156 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99958 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00334 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99655 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47310 * 90.00357 * 11 9 7 13 13 H 1.48505 * 109.46920 * 209.99792 * 11 9 7 14 14 H 1.48496 * 109.47408 * 329.99822 * 11 9 7 15 15 C 1.34782 * 120.00129 * 179.97438 * 2 1 3 16 16 O 1.21517 * 120.00096 * 182.08568 * 15 2 1 17 17 C 1.48152 * 119.99998 * 2.09415 * 15 2 1 18 18 C 1.39159 * 119.69142 * 172.79239 * 17 15 2 19 19 C 1.38743 * 119.18837 * 179.97438 * 18 17 15 20 20 C 1.38379 * 118.55384 * 359.73649 * 19 18 17 21 21 C 1.39241 * 119.30656 * 0.50592 * 20 19 18 22 22 O 1.35670 * 119.61406 * 179.75128 * 21 20 19 23 23 N 1.31928 * 120.76723 * 359.48210 * 21 20 19 24 24 H 1.09002 * 109.46915 * 263.78074 * 1 2 3 25 25 H 1.09000 * 109.47091 * 23.77941 * 1 2 3 26 26 H 1.09002 * 109.46884 * 143.78369 * 1 2 3 27 27 H 1.09005 * 109.46620 * 29.99889 * 3 2 1 28 28 H 1.08999 * 109.47775 * 149.99928 * 3 2 1 29 29 H 1.08999 * 109.46909 * 299.99714 * 4 3 2 30 30 H 1.08999 * 109.47095 * 59.99256 * 4 3 2 31 31 H 1.08999 * 109.47446 * 300.00026 * 5 4 3 32 32 H 1.09007 * 109.46521 * 59.99901 * 5 4 3 33 33 H 0.96998 * 120.00103 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00558 * 180.02562 * 10 9 7 35 35 H 1.08004 * 120.41068 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.72252 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.34237 * 180.27943 * 20 19 18 38 38 H 0.96699 * 113.99778 * 269.73001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4426 6 7 3.4617 3.4582 -2.8238 7 6 4.1341 4.6246 -3.0741 8 1 4.4844 5.2327 -2.2532 9 6 4.3655 5.0253 -4.3827 10 7 5.0122 6.1460 -4.6233 11 14 3.7589 3.9737 -5.8025 12 1 2.3856 4.3948 -6.1790 13 1 4.6652 4.1435 -6.9667 14 1 3.7439 2.5471 -5.3908 15 6 2.1389 -1.1672 0.0005 16 8 3.3535 -1.1676 0.0388 17 6 1.3989 -2.4499 -0.0458 18 6 2.0978 -3.6438 -0.1967 19 6 1.3943 -4.8389 -0.2383 20 6 0.0160 -4.7996 -0.1218 21 6 -0.6210 -3.5698 0.0219 22 8 -1.9725 -3.5236 0.1315 23 7 0.0748 -2.4495 0.0580 24 1 -0.3633 -0.1113 1.0216 25 1 -0.3633 0.9404 -0.4144 26 1 -0.3633 -0.8291 -0.6072 27 1 1.6084 2.0283 0.5139 28 1 3.1500 1.1384 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8406 -1.9563 31 1 2.6277 3.7952 -0.9289 32 1 4.1695 2.9056 -0.9286 33 1 3.1468 2.9122 -3.5611 34 1 5.1736 6.4263 -5.5378 35 1 3.1745 -3.6401 -0.2805 36 1 1.9115 -5.7798 -0.3550 37 1 -0.5599 -5.7130 -0.1458 38 1 -2.4330 -3.4391 -0.7146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483457738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:49 Heat of formation + Delta-G solvation = -3.073627 kcal Electronic energy + Delta-G solvation = -21011.423981 eV Core-core repulsion = 17662.820535 eV Total energy + Delta-G solvation = -3348.603446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24544 -39.54590 -37.41343 -36.30264 -35.02509 -33.26747 -32.08733 -30.92060 -30.09358 -26.95887 -26.20448 -24.26774 -23.70726 -22.37059 -21.06107 -20.25475 -18.85294 -17.76576 -17.50578 -16.94964 -16.46909 -15.99288 -15.94889 -15.31298 -14.66879 -14.46049 -14.08101 -13.98160 -13.55440 -13.36255 -12.96184 -12.76497 -12.74900 -12.53058 -12.17772 -12.09844 -11.91706 -11.17620 -10.90153 -10.81848 -10.53451 -10.47951 -10.40254 -10.10171 -9.56356 -9.47193 -9.42012 -8.85335 -8.65845 -7.18750 -5.72929 -3.08061 0.18606 0.62744 2.41123 2.74911 3.10288 3.38656 3.40470 3.43850 3.47685 3.99161 4.30395 4.46747 4.55747 4.63014 4.83395 5.00329 5.11973 5.16241 5.27991 5.44993 5.55749 5.58019 5.61787 5.64925 5.83959 5.85531 5.95207 6.04911 6.06605 6.29230 6.49564 6.78846 6.81198 6.94732 7.15535 7.30692 7.98238 8.03907 8.46391 9.25567 9.98165 10.18455 11.45667 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026582 B = 0.003215 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.104495 B = 8705.737184 C = 8803.488578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.116 3.884 4 C -0.143 4.143 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.243 4.243 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.936 5.936 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.563 3.437 16 O -0.527 6.527 17 C 0.108 3.892 18 C -0.121 4.121 19 C -0.065 4.065 20 C -0.166 4.166 21 C 0.303 3.697 22 O -0.479 6.479 23 N -0.469 5.469 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.589 -25.077 10.327 30.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.323 5.323 3 C -0.007 4.007 4 C -0.182 4.182 5 C 0.033 3.967 6 N -0.403 5.403 7 C -0.372 4.372 8 H 0.108 0.892 9 C -0.193 4.193 10 N -0.584 5.584 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.349 3.651 16 O -0.403 6.403 17 C -0.030 4.030 18 C -0.142 4.142 19 C -0.090 4.090 20 C -0.188 4.188 21 C 0.123 3.877 22 O -0.287 6.287 23 N -0.192 5.192 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.163 0.837 38 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -14.188 -24.103 11.095 30.089 hybrid contribution -0.331 -1.361 -1.701 2.203 sum -14.519 -25.463 9.395 30.780 Atomic orbital electron populations 1.22378 0.78051 1.03355 1.02848 1.47791 1.08076 1.05645 1.70808 1.21588 0.97825 0.83357 0.97886 1.22116 1.01065 0.99011 0.96004 1.20522 0.96656 0.91898 0.87647 1.42707 1.69704 1.26210 1.01631 1.19087 1.27732 0.96792 0.93635 0.89150 1.24671 1.00512 0.97212 0.96899 1.69701 1.46219 1.23027 1.19433 0.86528 0.78415 0.80333 0.83184 1.21097 1.21686 1.20376 1.17890 0.86577 0.82943 0.77710 1.90824 1.12623 1.86637 1.50182 1.21001 0.88364 0.94564 0.99036 1.22183 1.02768 0.91482 0.97717 1.21582 0.93395 0.98880 0.95155 1.22359 0.95847 0.99030 1.01535 1.19306 0.84980 0.88020 0.95442 1.84811 1.13065 1.95182 1.35599 1.67686 1.07923 1.30380 1.13199 0.92560 0.91901 0.87925 0.89933 0.89372 0.91652 0.91932 0.95415 0.95293 0.80728 0.93088 0.82821 0.83389 0.83696 0.73953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 9.30 59.85 0.56 1.36 16 2 N -0.59 -7.78 2.87 -182.57 -0.52 -8.31 16 3 C 0.12 1.60 5.39 -4.04 -0.02 1.58 16 4 C -0.14 -2.36 5.65 -26.73 -0.15 -2.51 16 5 C 0.16 3.24 6.26 -4.04 -0.03 3.22 16 6 N -0.76 -19.01 5.41 -59.91 -0.32 -19.33 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 9 C 0.00 0.08 5.50 -17.44 -0.10 -0.02 16 10 N -0.94 -30.14 13.97 55.49 0.78 -29.37 16 11 Si 0.89 22.79 27.74 -169.99 -4.71 18.08 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 15 C 0.56 8.02 7.66 -12.19 -0.09 7.93 16 16 O -0.53 -9.02 15.90 5.35 0.09 -8.93 16 17 C 0.11 1.25 6.62 -83.03 -0.55 0.70 16 18 C -0.12 -1.12 9.62 -39.05 -0.38 -1.49 16 19 C -0.06 -0.41 10.16 -39.34 -0.40 -0.81 16 20 C -0.17 -1.04 10.05 -39.16 -0.39 -1.43 16 21 C 0.30 2.49 7.74 -17.14 -0.13 2.36 16 22 O -0.48 -3.15 13.56 -18.71 -0.25 -3.40 16 23 N -0.47 -4.85 6.06 -9.88 -0.06 -4.91 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.60 8.03 -51.93 -0.42 0.19 16 26 H 0.10 1.06 5.26 -52.09 -0.27 0.79 16 27 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.09 1.31 7.39 -51.93 -0.38 0.92 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.36 8.84 5.53 -40.82 -0.23 8.61 16 34 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 35 H 0.15 1.38 7.65 -52.48 -0.40 0.98 16 36 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 37 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.40 0.68 9.06 45.56 0.41 1.10 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -36.79 324.86 -6.22 -43.01 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.26 Total: 4.70 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.84 Total: 3.57 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.13 Total: -61.92 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.17 Total: -12.33 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.79 -6.22 -43.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483457738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.934 kcal (2) G-P(sol) polarization free energy of solvation -36.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds