Wall clock time and date at job start Tue Mar 31 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00396 * 2 1 4 4 C 1.53003 * 109.47058 * 270.00256 * 3 2 1 5 5 C 1.53001 * 109.47266 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47156 * 179.97438 * 5 4 3 7 7 C 1.36935 * 119.99958 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99887 * 0.02562 * 7 6 5 9 9 C 1.38807 * 120.00249 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00334 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99655 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47310 * 90.00357 * 11 9 7 13 13 H 1.48505 * 109.46920 * 209.99792 * 11 9 7 14 14 H 1.48496 * 109.47408 * 329.99822 * 11 9 7 15 15 C 1.34782 * 120.00129 * 179.97438 * 2 1 3 16 16 O 1.21517 * 120.00096 * 182.08568 * 15 2 1 17 17 C 1.48152 * 119.99998 * 2.09415 * 15 2 1 18 18 C 1.39159 * 119.69142 * 172.79239 * 17 15 2 19 19 C 1.38743 * 119.18837 * 179.97438 * 18 17 15 20 20 C 1.38379 * 118.55384 * 359.73649 * 19 18 17 21 21 C 1.39241 * 119.30656 * 0.50592 * 20 19 18 22 22 O 1.35670 * 119.61406 * 179.75128 * 21 20 19 23 23 N 1.31928 * 120.76723 * 359.48210 * 21 20 19 24 24 H 1.09002 * 109.46915 * 263.78074 * 1 2 3 25 25 H 1.09000 * 109.47091 * 23.77941 * 1 2 3 26 26 H 1.09002 * 109.46884 * 143.78369 * 1 2 3 27 27 H 1.09005 * 109.46620 * 29.99889 * 3 2 1 28 28 H 1.08999 * 109.47775 * 149.99928 * 3 2 1 29 29 H 1.08999 * 109.46909 * 299.99714 * 4 3 2 30 30 H 1.08999 * 109.47095 * 59.99256 * 4 3 2 31 31 H 1.08999 * 109.47446 * 300.00026 * 5 4 3 32 32 H 1.09007 * 109.46521 * 59.99901 * 5 4 3 33 33 H 0.96998 * 120.00103 * 0.02562 * 6 5 4 34 34 H 0.97005 * 120.00558 * 180.02562 * 10 9 7 35 35 H 1.08004 * 120.41068 * 359.97438 * 18 17 15 36 36 H 1.07997 * 120.72252 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.34237 * 180.27943 * 20 19 18 38 38 H 0.96699 * 113.99778 * 269.73001 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4426 6 7 3.4617 3.4582 -2.8238 7 6 4.1341 4.6246 -3.0741 8 1 4.4844 5.2327 -2.2532 9 6 4.3655 5.0253 -4.3827 10 7 5.0122 6.1460 -4.6233 11 14 3.7589 3.9737 -5.8025 12 1 2.3856 4.3948 -6.1790 13 1 4.6652 4.1435 -6.9667 14 1 3.7439 2.5471 -5.3908 15 6 2.1389 -1.1672 0.0005 16 8 3.3535 -1.1676 0.0388 17 6 1.3989 -2.4499 -0.0458 18 6 2.0978 -3.6438 -0.1967 19 6 1.3943 -4.8389 -0.2383 20 6 0.0160 -4.7996 -0.1218 21 6 -0.6210 -3.5698 0.0219 22 8 -1.9725 -3.5236 0.1315 23 7 0.0748 -2.4495 0.0580 24 1 -0.3633 -0.1113 1.0216 25 1 -0.3633 0.9404 -0.4144 26 1 -0.3633 -0.8291 -0.6072 27 1 1.6084 2.0283 0.5139 28 1 3.1500 1.1384 0.5138 29 1 3.0416 0.9507 -1.9563 30 1 1.5001 1.8406 -1.9563 31 1 2.6277 3.7952 -0.9289 32 1 4.1695 2.9056 -0.9286 33 1 3.1468 2.9122 -3.5611 34 1 5.1736 6.4263 -5.5378 35 1 3.1745 -3.6401 -0.2805 36 1 1.9115 -5.7798 -0.3550 37 1 -0.5599 -5.7130 -0.1458 38 1 -2.4330 -3.4391 -0.7146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483457738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:49 Heat of formation + Delta-G solvation = -32.312441 kcal Electronic energy + Delta-G solvation = -21012.691872 eV Core-core repulsion = 17662.820535 eV Total energy + Delta-G solvation = -3349.871336 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97289 -40.44185 -38.02240 -37.61763 -36.59722 -34.36501 -33.60254 -32.11110 -31.31961 -28.05699 -27.40969 -25.43907 -24.39576 -23.85612 -22.69948 -21.15094 -19.68281 -19.47726 -18.64227 -17.63691 -17.18729 -16.94097 -16.81641 -16.56336 -16.09794 -15.91523 -15.68700 -14.91210 -14.79392 -14.51242 -14.31550 -13.85635 -13.75084 -13.64133 -13.26993 -13.12897 -12.84374 -12.80712 -12.62507 -12.47064 -12.08393 -11.87081 -11.82617 -11.53766 -11.02274 -11.00453 -10.17861 -10.12930 -9.67003 -9.34294 -8.05765 -5.40185 -0.48323 0.07379 1.35157 1.39147 1.46620 1.56386 1.82883 2.45943 2.47274 2.66173 3.25065 3.27503 3.57592 3.75098 3.89970 3.98195 4.01933 4.17507 4.29681 4.35173 4.45392 4.50439 4.55452 4.68017 4.78365 4.89034 4.94206 5.05435 5.14083 5.22972 5.25069 5.41634 5.54945 5.72036 6.18274 6.21213 6.48142 6.72881 6.98435 7.03932 7.79668 7.99234 9.15812 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026582 B = 0.003215 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.104495 B = 8705.737184 C = 8803.488578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.593 5.593 3 C 0.121 3.879 4 C -0.125 4.125 5 C 0.157 3.843 6 N -0.761 5.761 7 C -0.240 4.240 8 H 0.058 0.942 9 C -0.064 4.064 10 N -0.983 5.983 11 Si 0.959 3.041 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.258 1.258 15 C 0.555 3.445 16 O -0.569 6.569 17 C 0.081 3.919 18 C -0.130 4.130 19 C -0.054 4.054 20 C -0.151 4.151 21 C 0.296 3.704 22 O -0.486 6.486 23 N -0.485 5.485 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.020 0.980 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.184 0.816 37 H 0.179 0.821 38 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.089 -28.151 10.001 34.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.323 5.323 3 C -0.002 4.002 4 C -0.164 4.164 5 C 0.031 3.969 6 N -0.407 5.407 7 C -0.371 4.371 8 H 0.076 0.924 9 C -0.256 4.256 10 N -0.634 5.634 11 Si 0.785 3.215 12 H -0.198 1.198 13 H -0.219 1.219 14 H -0.183 1.183 15 C 0.342 3.658 16 O -0.449 6.449 17 C -0.056 4.056 18 C -0.151 4.151 19 C -0.079 4.079 20 C -0.172 4.172 21 C 0.115 3.885 22 O -0.296 6.296 23 N -0.208 5.208 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.038 0.962 33 H 0.198 0.802 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.202 0.798 37 H 0.197 0.803 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -16.746 -27.202 10.795 33.718 hybrid contribution 0.382 -0.444 -1.494 1.605 sum -16.364 -27.646 9.301 33.445 Atomic orbital electron populations 1.22483 0.76294 1.04188 1.03318 1.47890 1.09094 1.05057 1.70278 1.21456 0.98063 0.84603 0.96085 1.21912 1.00544 0.96144 0.97793 1.20678 0.96950 0.94097 0.85199 1.42739 1.69233 1.24953 1.03783 1.19076 1.27356 0.97730 0.92938 0.92439 1.25549 1.01209 0.98802 1.00026 1.69884 1.48095 1.25259 1.20118 0.85355 0.78020 0.79264 0.78822 1.19791 1.21869 1.18293 1.18436 0.86392 0.84183 0.76745 1.90783 1.14428 1.87428 1.52233 1.20638 0.89042 0.93738 1.02148 1.22292 1.02739 0.92064 0.98007 1.21970 0.93547 0.98991 0.93421 1.22733 0.95906 0.99458 0.99064 1.19584 0.85555 0.88226 0.95122 1.84779 1.12311 1.95105 1.37426 1.67510 1.07392 1.31906 1.14018 0.92173 0.90711 0.87516 0.87423 0.90849 0.93466 0.90673 0.94358 0.96196 0.80197 0.93168 0.83468 0.79830 0.80338 0.71583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.54 9.30 127.77 1.19 2.72 16 2 N -0.59 -15.28 2.87 -849.83 -2.44 -17.72 16 3 C 0.12 3.27 5.39 86.38 0.47 3.74 16 4 C -0.12 -4.02 5.65 30.60 0.17 -3.84 16 5 C 0.16 6.32 6.26 86.38 0.54 6.86 16 6 N -0.76 -37.93 5.41 -343.44 -1.86 -39.78 16 7 C -0.24 -14.39 10.47 84.03 0.88 -13.51 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 10 N -0.98 -64.68 13.97 21.65 0.30 -64.37 16 11 Si 0.96 46.93 27.74 68.60 1.90 48.84 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 13 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 14 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 15 C 0.55 16.03 7.66 86.88 0.67 16.70 16 16 O -0.57 -20.29 15.90 -3.77 -0.06 -20.35 16 17 C 0.08 1.82 6.62 41.85 0.28 2.10 16 18 C -0.13 -2.28 9.62 22.61 0.22 -2.06 16 19 C -0.05 -0.51 10.16 22.42 0.23 -0.29 16 20 C -0.15 -1.31 10.05 22.54 0.23 -1.08 16 21 C 0.30 4.09 7.74 84.92 0.66 4.75 16 22 O -0.49 -4.97 13.56 -89.87 -1.22 -6.19 16 23 N -0.49 -9.34 6.06 -298.20 -1.81 -11.14 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 26 H 0.11 2.05 5.26 -2.71 -0.01 2.03 16 27 H 0.11 2.36 8.07 -2.38 -0.02 2.34 16 28 H 0.07 2.22 7.39 -2.39 -0.02 2.20 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.37 17.35 5.53 -92.71 -0.51 16.84 16 34 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 35 H 0.15 2.68 7.65 -2.91 -0.02 2.66 16 36 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 38 H 0.42 0.17 9.06 -74.06 -0.67 -0.50 16 Total: -1.00 -81.56 324.86 0.65 -80.90 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.15 Total: 17.20 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 5.99 Total: 12.62 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -5.80 Total: -133.02 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -1.28 Total: -26.54 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.90 Total: 48.84 kcal Total: -81.56 0.65 -80.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483457738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.589 kcal (2) G-P(sol) polarization free energy of solvation -81.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds