Wall clock time and date at job start Tue Mar 31 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36947 * 120.00039 * 2 1 4 4 H 1.08000 * 120.00101 * 173.53747 * 3 2 1 5 5 C 1.38809 * 119.99949 * 353.53354 * 3 2 1 6 6 N 1.31625 * 119.99870 * 5.25583 * 5 3 2 7 7 Si 1.86795 * 120.00096 * 185.25276 * 5 3 2 8 8 H 1.48495 * 109.47567 * 90.00169 * 7 5 3 9 9 H 1.48501 * 109.47395 * 210.00514 * 7 5 3 10 10 H 1.48507 * 109.47293 * 330.00132 * 7 5 3 11 11 C 1.46502 * 120.00337 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46876 * 275.64575 * 11 2 1 13 13 H 1.09002 * 109.99972 * 53.97458 * 12 11 2 14 14 C 1.54333 * 109.99283 * 292.93088 * 12 11 2 15 15 C 1.55152 * 103.02177 * 218.66632 * 14 12 11 16 16 C 1.54905 * 101.58141 * 35.31212 * 15 14 12 17 17 N 1.47021 * 109.88270 * 175.06648 * 12 11 2 18 18 C 1.34779 * 125.64924 * 298.39585 * 17 12 11 19 19 O 1.21501 * 119.99751 * 354.73690 * 18 17 12 20 20 C 1.48327 * 120.00209 * 174.72989 * 18 17 12 21 21 C 1.42276 * 126.94231 * 179.97438 * 20 18 17 22 22 C 1.35307 * 103.92391 * 180.26166 * 21 20 18 23 23 O 1.34015 * 106.66775 * 359.59476 * 22 21 20 24 24 N 1.20900 * 111.84799 * 0.44605 * 23 22 21 25 25 H 1.08994 * 109.46837 * 184.25226 * 1 2 3 26 26 H 1.09007 * 109.46809 * 304.25608 * 1 2 3 27 27 H 1.09001 * 109.46756 * 64.24801 * 1 2 3 28 28 H 0.97002 * 119.99792 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47361 * 155.63961 * 11 2 1 30 30 H 1.09003 * 109.46800 * 35.64019 * 11 2 1 31 31 H 1.09001 * 110.84894 * 100.20156 * 14 12 11 32 32 H 1.08995 * 110.51511 * 336.98593 * 14 12 11 33 33 H 1.08996 * 111.00786 * 277.23485 * 15 14 12 34 34 H 1.09003 * 111.00452 * 153.38284 * 15 14 12 35 35 H 1.09003 * 110.36564 * 204.15456 * 16 15 14 36 36 H 1.08999 * 110.46812 * 81.87180 * 16 15 14 37 37 H 1.08005 * 128.03163 * 0.02562 * 21 20 18 38 38 H 1.07997 * 126.66614 * 179.73404 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2246 1.1890 0.1053 5 6 1.4623 2.3843 -0.1354 6 7 0.1463 2.3889 -0.1597 7 14 2.4048 3.9903 -0.2829 8 1 2.6799 4.2731 -1.7145 9 1 1.5954 5.0940 0.2931 10 1 3.6886 3.8805 0.4555 11 6 2.1976 -1.2687 0.0006 12 6 2.3297 -1.7806 1.4363 13 1 1.3468 -1.8355 1.9044 14 6 3.2439 -0.8402 2.2498 15 6 4.0569 -1.8220 3.1342 16 6 4.2301 -3.0298 2.1799 17 7 2.9589 -3.1094 1.4374 18 6 2.4593 -4.2156 0.8517 19 8 1.3569 -4.1877 0.3416 20 6 3.2552 -5.4671 0.8297 21 6 2.8747 -6.7124 0.2565 22 6 3.9311 -7.5210 0.5040 23 8 4.8371 -6.7806 1.1575 24 7 4.4503 -5.6488 1.3341 25 1 -0.3633 -1.0248 0.0762 26 1 -0.3633 0.5785 0.8495 27 1 -0.3633 0.4465 -0.9256 28 1 -0.3341 3.2264 -0.2540 29 1 3.1899 -1.1155 -0.4234 30 1 1.6559 -2.0012 -0.5979 31 1 2.6532 -0.1636 2.8674 32 1 3.9041 -0.2814 1.5865 33 1 3.4939 -2.1045 4.0237 34 1 5.0232 -1.3959 3.4044 35 1 4.3938 -3.9439 2.7507 36 1 5.0597 -2.8579 1.4942 37 1 1.9547 -6.9567 -0.2537 38 1 4.0266 -8.5604 0.2266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485051941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:20 Heat of formation + Delta-G solvation = 73.380164 kcal Electronic energy + Delta-G solvation = -22241.226623 eV Core-core repulsion = 18895.938462 eV Total energy + Delta-G solvation = -3345.288161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.22818 -39.89519 -37.36815 -35.31754 -34.09428 -32.26332 -31.45594 -31.11553 -28.94135 -25.90698 -25.46110 -24.83446 -23.16370 -22.31783 -21.24795 -20.46185 -19.13981 -17.91452 -17.77238 -17.00314 -16.78666 -15.98560 -15.16541 -14.69619 -14.39700 -14.10705 -13.66310 -13.52132 -13.32006 -13.08808 -12.77885 -12.60325 -12.08750 -11.80954 -11.78930 -11.13439 -10.92464 -10.81087 -10.74448 -10.57626 -10.43680 -10.27042 -10.10981 -10.02223 -9.95155 -9.75663 -9.64949 -8.61573 -8.36685 -6.83612 -5.58700 -3.02013 1.04288 1.57046 2.82203 3.05849 3.25742 3.40908 3.46252 3.47989 3.86136 4.40871 4.54041 4.81407 4.85257 4.97121 5.16870 5.18102 5.27414 5.47782 5.62788 5.66625 5.68755 5.79948 5.84291 5.98512 6.10013 6.31250 6.36000 6.55042 6.63299 6.79575 6.94154 6.96167 7.63978 7.72396 7.77617 7.83710 8.01285 8.23027 8.43458 9.32181 9.95038 10.39751 11.40357 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.004368 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.378579 B = 6409.317823 C = 6894.045733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.605 5.605 3 C -0.243 4.243 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.917 5.917 7 Si 0.907 3.093 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.150 3.850 12 C 0.114 3.886 13 H 0.073 0.927 14 C -0.107 4.107 15 C -0.138 4.138 16 C 0.102 3.898 17 N -0.595 5.595 18 C 0.603 3.397 19 O -0.520 6.520 20 C -0.017 4.017 21 C -0.185 4.185 22 C -0.064 4.064 23 O 0.115 5.885 24 N -0.331 5.331 25 H -0.007 1.007 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.249 0.751 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.181 0.819 38 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 -18.287 4.694 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.328 5.328 3 C -0.372 4.372 4 H 0.092 0.908 5 C -0.201 4.201 6 N -0.565 5.565 7 Si 0.737 3.263 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.020 3.980 12 C 0.009 3.991 13 H 0.091 0.909 14 C -0.145 4.145 15 C -0.176 4.176 16 C -0.021 4.021 17 N -0.329 5.329 18 C 0.388 3.612 19 O -0.395 6.395 20 C -0.177 4.177 21 C -0.207 4.207 22 C -0.145 4.145 23 O 0.041 5.959 24 N -0.033 5.033 25 H 0.012 0.988 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.198 0.802 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 9.203 -17.294 5.008 20.220 hybrid contribution -0.192 0.460 -0.500 0.706 sum 9.012 -16.833 4.508 19.619 Atomic orbital electron populations 1.21034 0.81431 0.93236 1.01732 1.43996 1.02490 1.00177 1.86154 1.19309 0.91126 0.83751 1.42999 0.90849 1.24875 0.95669 0.97817 1.01768 1.70247 1.04986 1.24713 1.56512 0.86211 0.78672 0.83656 0.77746 1.21656 1.21799 1.20724 1.20996 0.96402 0.88558 0.92009 1.22844 0.96250 0.78710 1.01300 0.90936 1.22551 0.97905 0.96410 0.97679 1.22852 1.01179 0.95706 0.97839 1.22424 0.86044 0.99390 0.94256 1.48571 1.22868 1.09333 1.52127 1.16471 0.84767 0.80505 0.79453 1.90825 1.18982 1.83357 1.46288 1.23719 0.93210 0.97863 1.02886 1.22802 1.02334 0.91036 1.04513 1.26009 0.89167 1.00098 0.99214 1.84800 1.39696 1.15810 1.55626 1.74278 1.13256 0.97944 1.17792 0.98807 0.93656 0.94301 0.94019 0.93481 0.93523 0.89833 0.90089 0.91131 0.90080 0.90297 0.91323 0.80198 0.76085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.50 8.99 59.85 0.54 5.04 16 2 N -0.60 -15.69 2.83 -181.12 -0.51 -16.20 16 3 C -0.24 -6.61 9.00 -15.06 -0.14 -6.75 16 4 H 0.07 1.91 7.15 -52.49 -0.38 1.54 16 5 C -0.01 -0.15 5.46 -17.43 -0.10 -0.24 16 6 N -0.92 -26.97 9.45 55.49 0.52 -26.44 16 7 Si 0.91 22.00 29.56 -169.99 -5.02 16.97 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 C 0.15 3.33 5.05 -4.04 -0.02 3.31 16 12 C 0.11 2.18 3.08 -66.95 -0.21 1.98 16 13 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 14 C -0.11 -1.84 5.78 -24.89 -0.14 -1.98 16 15 C -0.14 -1.81 7.09 -24.59 -0.17 -1.99 16 16 C 0.10 1.41 6.01 -2.53 -0.02 1.40 16 17 N -0.60 -10.14 3.06 -163.94 -0.50 -10.64 16 18 C 0.60 10.61 7.59 -12.11 -0.09 10.52 16 19 O -0.52 -10.74 16.13 5.36 0.09 -10.65 16 20 C -0.02 -0.24 7.01 -82.53 -0.58 -0.82 16 21 C -0.18 -1.92 10.99 -39.08 -0.43 -2.35 16 22 C -0.06 -0.46 12.28 29.69 0.36 -0.09 16 23 O 0.11 1.13 11.18 17.25 0.19 1.32 16 24 N -0.33 -4.19 9.45 33.29 0.31 -3.88 16 25 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 26 H 0.04 1.27 7.02 -51.92 -0.36 0.91 16 27 H 0.04 1.11 7.07 -51.93 -0.37 0.74 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 30 H 0.05 1.10 6.83 -51.93 -0.35 0.74 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.47 6.86 -51.93 -0.36 1.11 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.02 6.55 -51.93 -0.34 0.68 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 38 H 0.22 0.43 8.06 -52.49 -0.42 0.00 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -32.70 313.70 -6.25 -38.95 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -5.07 Total: -2.18 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.99 Total: 8.02 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.18 Total: -57.16 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.28 Total: -9.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.70 -6.25 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485051941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.333 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds