Wall clock time and date at job start Tue Mar 31 2020 01:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36947 * 120.00039 * 2 1 4 4 H 1.08000 * 120.00101 * 173.53747 * 3 2 1 5 5 C 1.38809 * 119.99949 * 353.53354 * 3 2 1 6 6 N 1.31625 * 119.99870 * 5.25583 * 5 3 2 7 7 Si 1.86795 * 120.00096 * 185.25276 * 5 3 2 8 8 H 1.48495 * 109.47567 * 90.00169 * 7 5 3 9 9 H 1.48501 * 109.47395 * 210.00514 * 7 5 3 10 10 H 1.48507 * 109.47293 * 330.00132 * 7 5 3 11 11 C 1.46502 * 120.00337 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.46876 * 275.64575 * 11 2 1 13 13 H 1.09002 * 109.99972 * 53.97458 * 12 11 2 14 14 C 1.54333 * 109.99283 * 292.93088 * 12 11 2 15 15 C 1.55152 * 103.02177 * 218.66632 * 14 12 11 16 16 C 1.54905 * 101.58141 * 35.31212 * 15 14 12 17 17 N 1.47021 * 109.88270 * 175.06648 * 12 11 2 18 18 C 1.34779 * 125.64924 * 298.39585 * 17 12 11 19 19 O 1.21501 * 119.99751 * 354.73690 * 18 17 12 20 20 C 1.48327 * 120.00209 * 174.72989 * 18 17 12 21 21 C 1.42276 * 126.94231 * 179.97438 * 20 18 17 22 22 C 1.35307 * 103.92391 * 180.26166 * 21 20 18 23 23 O 1.34015 * 106.66775 * 359.59476 * 22 21 20 24 24 N 1.20900 * 111.84799 * 0.44605 * 23 22 21 25 25 H 1.08994 * 109.46837 * 184.25226 * 1 2 3 26 26 H 1.09007 * 109.46809 * 304.25608 * 1 2 3 27 27 H 1.09001 * 109.46756 * 64.24801 * 1 2 3 28 28 H 0.97002 * 119.99792 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47361 * 155.63961 * 11 2 1 30 30 H 1.09003 * 109.46800 * 35.64019 * 11 2 1 31 31 H 1.09001 * 110.84894 * 100.20156 * 14 12 11 32 32 H 1.08995 * 110.51511 * 336.98593 * 14 12 11 33 33 H 1.08996 * 111.00786 * 277.23485 * 15 14 12 34 34 H 1.09003 * 111.00452 * 153.38284 * 15 14 12 35 35 H 1.09003 * 110.36564 * 204.15456 * 16 15 14 36 36 H 1.08999 * 110.46812 * 81.87180 * 16 15 14 37 37 H 1.08005 * 128.03163 * 0.02562 * 21 20 18 38 38 H 1.07997 * 126.66614 * 179.73404 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2246 1.1890 0.1053 5 6 1.4623 2.3843 -0.1354 6 7 0.1463 2.3889 -0.1597 7 14 2.4048 3.9903 -0.2829 8 1 2.6799 4.2731 -1.7145 9 1 1.5954 5.0940 0.2931 10 1 3.6886 3.8805 0.4555 11 6 2.1976 -1.2687 0.0006 12 6 2.3297 -1.7806 1.4363 13 1 1.3468 -1.8355 1.9044 14 6 3.2439 -0.8402 2.2498 15 6 4.0569 -1.8220 3.1342 16 6 4.2301 -3.0298 2.1799 17 7 2.9589 -3.1094 1.4374 18 6 2.4593 -4.2156 0.8517 19 8 1.3569 -4.1877 0.3416 20 6 3.2552 -5.4671 0.8297 21 6 2.8747 -6.7124 0.2565 22 6 3.9311 -7.5210 0.5040 23 8 4.8371 -6.7806 1.1575 24 7 4.4503 -5.6488 1.3341 25 1 -0.3633 -1.0248 0.0762 26 1 -0.3633 0.5785 0.8495 27 1 -0.3633 0.4465 -0.9256 28 1 -0.3341 3.2264 -0.2540 29 1 3.1899 -1.1155 -0.4234 30 1 1.6559 -2.0012 -0.5979 31 1 2.6532 -0.1636 2.8674 32 1 3.9041 -0.2814 1.5865 33 1 3.4939 -2.1045 4.0237 34 1 5.0232 -1.3959 3.4044 35 1 4.3938 -3.9439 2.7507 36 1 5.0597 -2.8579 1.4942 37 1 1.9547 -6.9567 -0.2537 38 1 4.0266 -8.5604 0.2266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485051941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:20 Heat of formation + Delta-G solvation = 52.059953 kcal Electronic energy + Delta-G solvation = -22242.151136 eV Core-core repulsion = 18895.938462 eV Total energy + Delta-G solvation = -3346.212675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.10328 -41.28772 -38.83713 -37.24006 -35.06636 -33.56183 -33.06815 -32.29140 -30.63019 -28.07239 -26.90977 -26.28464 -24.09205 -23.56307 -22.91258 -21.82987 -20.41261 -18.94608 -18.82861 -18.76662 -18.08238 -17.46350 -16.73903 -16.42504 -15.62042 -15.47247 -15.26712 -14.96168 -14.65855 -14.42520 -14.19196 -14.05998 -13.73167 -13.50158 -12.91318 -12.81486 -12.75305 -12.69081 -12.32433 -12.06012 -11.99524 -11.91621 -11.67276 -11.60687 -11.46336 -11.35223 -10.69223 -10.67068 -9.92320 -8.93774 -7.73768 -5.20129 0.09256 0.80474 1.47696 1.49676 1.58014 1.64037 2.01005 2.34193 2.51989 2.82166 3.35439 3.50203 3.56695 3.75567 3.82865 3.97536 4.00369 4.21558 4.27489 4.38072 4.40972 4.61812 4.69601 4.75494 4.82412 4.86571 4.99334 5.00819 5.02221 5.08438 5.32245 5.35786 5.50637 5.58294 5.78034 6.26613 6.32809 6.79715 7.10935 7.15144 7.84281 8.27768 9.25636 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.004368 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.378579 B = 6409.317823 C = 6894.045733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.619 5.619 3 C -0.246 4.246 4 H 0.086 0.914 5 C -0.063 4.063 6 N -0.950 5.950 7 Si 0.975 3.025 8 H -0.290 1.290 9 H -0.297 1.297 10 H -0.263 1.263 11 C 0.156 3.844 12 C 0.123 3.877 13 H 0.045 0.955 14 C -0.104 4.104 15 C -0.121 4.121 16 C 0.104 3.896 17 N -0.599 5.599 18 C 0.596 3.404 19 O -0.565 6.565 20 C -0.052 4.052 21 C -0.208 4.208 22 C -0.021 4.021 23 O 0.131 5.869 24 N -0.342 5.342 25 H 0.003 0.997 26 H 0.024 0.976 27 H 0.012 0.988 28 H 0.244 0.756 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.186 0.814 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -20.210 5.500 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.343 5.343 3 C -0.375 4.375 4 H 0.104 0.896 5 C -0.256 4.256 6 N -0.600 5.600 7 Si 0.803 3.197 8 H -0.218 1.218 9 H -0.224 1.224 10 H -0.187 1.187 11 C 0.029 3.971 12 C 0.017 3.983 13 H 0.063 0.937 14 C -0.142 4.142 15 C -0.159 4.159 16 C -0.018 4.018 17 N -0.332 5.332 18 C 0.384 3.616 19 O -0.443 6.443 20 C -0.209 4.209 21 C -0.231 4.231 22 C -0.101 4.101 23 O 0.053 5.947 24 N -0.041 5.041 25 H 0.022 0.978 26 H 0.043 0.957 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.203 0.797 38 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 12.274 -19.225 5.842 23.545 hybrid contribution -1.092 0.865 -0.786 1.599 sum 11.182 -18.361 5.055 22.084 Atomic orbital electron populations 1.20649 0.82301 0.92980 0.99391 1.44158 1.02265 1.01308 1.86527 1.19673 0.91757 0.84135 1.41927 0.89620 1.25713 0.96551 1.01209 1.02123 1.70447 1.06536 1.25054 1.57916 0.85131 0.77934 0.79130 0.77459 1.21756 1.22372 1.18737 1.20973 0.95591 0.86726 0.93853 1.22361 0.96140 0.80817 0.98936 0.93660 1.22427 0.97569 0.96423 0.97768 1.22848 1.02077 0.93918 0.97067 1.22592 0.84524 1.00373 0.94288 1.48619 1.23800 1.08316 1.52466 1.17046 0.84619 0.81632 0.78329 1.90784 1.21039 1.84391 1.48054 1.23399 0.94184 0.97460 1.05868 1.23038 1.04048 0.90327 1.05642 1.26932 0.86431 1.01172 0.95523 1.84768 1.39856 1.15120 1.54980 1.74262 1.12530 0.99332 1.17975 0.97832 0.95739 0.96908 0.94653 0.93109 0.95433 0.91174 0.90912 0.90191 0.86935 0.88893 0.90598 0.79651 0.70340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.67 8.99 127.77 1.15 11.82 16 2 N -0.62 -33.11 2.83 -726.94 -2.05 -35.16 16 3 C -0.25 -13.52 9.00 84.03 0.76 -12.77 16 4 H 0.09 4.42 7.15 -2.91 -0.02 4.40 16 5 C -0.06 -3.59 5.46 84.86 0.46 -3.13 16 6 N -0.95 -57.61 9.45 21.65 0.20 -57.41 16 7 Si 0.98 45.47 29.56 68.60 2.03 47.50 16 8 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 11 C 0.16 7.19 5.05 86.38 0.44 7.62 16 12 C 0.12 4.85 3.08 45.34 0.14 4.99 16 13 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 14 C -0.10 -3.49 5.78 31.78 0.18 -3.31 16 15 C -0.12 -2.90 7.09 31.98 0.23 -2.68 16 16 C 0.10 2.69 6.01 86.85 0.52 3.21 16 17 N -0.60 -20.48 3.06 -790.87 -2.42 -22.90 16 18 C 0.60 21.43 7.59 86.93 0.66 22.09 16 19 O -0.56 -24.49 16.13 -3.72 -0.06 -24.55 16 20 C -0.05 -1.42 7.01 42.96 0.30 -1.11 16 21 C -0.21 -3.91 10.99 22.60 0.25 -3.67 16 22 C -0.02 -0.20 12.28 67.14 0.82 0.62 16 23 O 0.13 2.08 11.18 71.89 0.80 2.88 16 24 N -0.34 -7.88 9.45 -49.52 -0.47 -8.35 16 25 H 0.00 0.17 7.90 -2.39 -0.02 0.15 16 26 H 0.02 1.44 7.02 -2.38 -0.02 1.42 16 27 H 0.01 0.75 7.07 -2.39 -0.02 0.74 16 28 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.05 2.26 7.88 -2.39 -0.02 2.24 16 30 H 0.03 1.36 6.83 -2.39 -0.02 1.34 16 31 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.57 6.86 -2.39 -0.02 2.55 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.19 6.55 -2.39 -0.02 2.18 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.28 -0.82 8.06 -2.91 -0.02 -0.85 16 Total: -1.00 -74.90 313.70 5.01 -69.90 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.07 Total: 4.41 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 5.91 Total: 23.69 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -4.74 Total: -123.82 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.74 Total: -21.67 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.90 5.01 -69.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485051941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.959 kcal (2) G-P(sol) polarization free energy of solvation -74.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds