Wall clock time and date at job start Tue Mar 31 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 120.00106 * 2 1 4 4 H 1.08004 * 119.99976 * 200.36445 * 3 2 1 5 5 C 1.38814 * 119.99883 * 20.36795 * 3 2 1 6 6 N 1.31617 * 119.99876 * 14.98479 * 5 3 2 7 7 Si 1.86799 * 119.99931 * 194.98557 * 5 3 2 8 8 H 1.48494 * 109.47200 * 85.00365 * 7 5 3 9 9 H 1.48505 * 109.46960 * 205.00137 * 7 5 3 10 10 H 1.48497 * 109.47026 * 324.99977 * 7 5 3 11 11 C 1.46505 * 120.00017 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46538 * 269.99277 * 11 2 1 13 13 N 1.46501 * 109.46899 * 179.97438 * 12 11 2 14 14 C 1.34773 * 119.99939 * 180.27474 * 13 12 11 15 15 O 1.21622 * 120.00141 * 359.73256 * 14 13 12 16 16 C 1.47295 * 119.99883 * 179.72918 * 14 13 12 17 17 C 1.37981 * 120.88025 * 359.72271 * 16 14 13 18 18 N 1.34352 * 120.37171 * 179.69076 * 17 16 14 19 19 C 1.46498 * 118.80841 * 180.28805 * 18 17 16 20 20 C 1.35582 * 122.38424 * 0.62982 * 18 17 16 21 21 C 1.34864 * 121.80431 * 359.66056 * 20 18 17 22 22 C 1.41674 * 119.33501 * 0.02562 * 21 20 18 23 23 O 1.22093 * 121.06439 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47208 * 275.09494 * 1 2 3 25 25 H 1.09000 * 109.47135 * 35.09063 * 1 2 3 26 26 H 1.08995 * 109.47378 * 155.09405 * 1 2 3 27 27 H 0.96998 * 119.99976 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47011 * 149.99925 * 11 2 1 29 29 H 1.08999 * 109.47022 * 29.99429 * 11 2 1 30 30 H 1.08999 * 109.46670 * 60.00128 * 12 11 2 31 31 H 1.08999 * 109.47589 * 299.99805 * 12 11 2 32 32 H 0.97001 * 119.99806 * 0.02562 * 13 12 11 33 33 H 1.07999 * 119.81764 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.46920 * 270.32668 * 19 18 17 35 35 H 1.08998 * 109.47147 * 30.32783 * 19 18 17 36 36 H 1.08993 * 109.47129 * 150.33001 * 19 18 17 37 37 H 1.08006 * 119.09978 * 179.67991 * 20 18 17 38 38 H 1.07997 * 120.33706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4184 6 7 0.3876 2.2836 1.0847 7 14 2.2825 4.0127 0.0358 8 1 1.8682 4.4461 -1.3227 9 1 1.8223 5.0099 1.0354 10 1 3.7624 3.9033 0.0908 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1845 -2.9799 1.4413 14 6 3.5166 -3.5667 2.6083 15 8 3.2129 -3.0403 3.6618 16 6 4.2473 -4.8456 2.6078 17 6 4.5959 -5.4616 1.4233 18 7 5.2678 -6.6250 1.4348 19 6 5.6261 -7.2459 0.1571 20 6 5.6204 -7.2487 2.5858 21 6 5.3214 -6.7314 3.7949 22 6 4.6193 -5.5031 3.8700 23 8 4.3319 -5.0066 4.9477 24 1 -0.3633 0.0913 1.0236 25 1 -0.3633 0.8409 -0.5908 26 1 -0.3634 -0.9320 -0.4328 27 1 -0.0517 3.0973 1.3774 28 1 3.1499 -1.1382 -0.5143 29 1 1.6083 -2.0282 -0.5146 30 1 1.5001 -1.8414 1.9556 31 1 3.0417 -0.9515 1.9559 32 1 3.4270 -3.3996 0.6011 33 1 4.3312 -5.0038 0.4817 34 1 4.8225 -7.9094 -0.1623 35 1 5.7774 -6.4705 -0.5939 36 1 6.5450 -7.8197 0.2771 37 1 6.1557 -8.1853 2.5331 38 1 5.6135 -7.2485 4.6969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492334912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:06 Heat of formation + Delta-G solvation = -0.081425 kcal Electronic energy + Delta-G solvation = -21144.174424 eV Core-core repulsion = 17795.700729 eV Total energy + Delta-G solvation = -3348.473694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20231 -38.94734 -37.76061 -35.92046 -34.03789 -32.79416 -32.26954 -31.08573 -28.12718 -27.18627 -25.84625 -24.94391 -23.36687 -22.56725 -20.63364 -20.43308 -18.18590 -17.60434 -16.88723 -16.66648 -16.10414 -15.85866 -15.16450 -14.81767 -14.69051 -14.62284 -13.94847 -13.72520 -13.51827 -13.43064 -13.14600 -12.91471 -12.61964 -12.32444 -12.26000 -12.19717 -11.17928 -10.84594 -10.80858 -10.56455 -10.25845 -9.97427 -9.93544 -9.87220 -9.74399 -9.10633 -8.56494 -8.50423 -8.09511 -6.81288 -5.71211 -3.16429 0.72226 1.12858 2.09488 3.18033 3.40595 3.46099 3.49013 3.52414 3.88165 3.93134 4.11835 4.36910 4.51955 4.52718 4.66164 4.80838 4.88992 5.20356 5.39116 5.44239 5.54980 5.66487 5.91804 5.98653 6.20336 6.29471 6.30933 6.49677 6.72904 6.76937 6.83602 7.07173 7.37718 7.74247 7.83097 7.94446 8.12061 8.39116 8.73820 9.23479 9.86440 10.33708 11.34035 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.003407 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.441812 B = 8216.185085 C = 8605.206295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.145 3.855 12 C 0.096 3.904 13 N -0.730 5.730 14 C 0.562 3.438 15 O -0.511 6.511 16 C -0.288 4.288 17 C 0.165 3.835 18 N -0.478 5.478 19 C 0.055 3.945 20 C 0.124 3.876 21 C -0.267 4.267 22 C 0.403 3.597 23 O -0.476 6.476 24 H 0.031 0.969 25 H 0.045 0.955 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.385 0.615 33 H 0.166 0.834 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.163 0.837 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.678 -24.250 -6.745 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.017 3.983 12 C -0.029 4.029 13 N -0.383 5.383 14 C 0.348 3.652 15 O -0.385 6.385 16 C -0.299 4.299 17 C 0.035 3.965 18 N -0.165 5.165 19 C -0.086 4.086 20 C 0.000 4.000 21 C -0.291 4.291 22 C 0.288 3.712 23 O -0.356 6.356 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.218 0.782 33 H 0.184 0.816 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.180 0.820 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.209 -23.495 -5.492 26.605 hybrid contribution 0.519 0.621 -0.617 1.018 sum 11.728 -22.875 -6.110 26.422 Atomic orbital electron populations 1.20845 0.82164 0.95600 0.99703 1.43953 1.02065 1.00367 1.85495 1.19220 0.97162 0.84799 1.37939 0.91120 1.25013 0.97838 0.98531 0.98176 1.70087 1.18756 1.26995 1.38973 0.86241 0.78679 0.83882 0.77535 1.21446 1.21690 1.20516 1.20982 0.96204 0.88881 0.92274 1.22504 0.95807 0.82708 1.01896 1.46106 1.59568 1.25529 1.07102 1.17550 0.79654 0.83625 0.84396 1.90873 1.52992 1.63840 1.30810 1.22704 1.12008 1.00535 0.94685 1.22227 0.89648 0.84902 0.99733 1.42631 1.47007 1.19079 1.07806 1.22476 1.02738 1.00124 0.83302 1.21659 0.96255 0.97020 0.85017 1.22498 1.08370 1.00778 0.97477 1.18238 0.79449 0.85361 0.88194 1.90843 1.49191 1.65406 1.30150 0.95074 0.93620 0.98268 0.93605 0.93423 0.94086 0.92161 0.91277 0.78172 0.81648 0.90105 0.88915 0.89052 0.81978 0.83012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 9.02 59.84 0.54 4.56 16 2 N -0.60 -15.06 2.93 -181.12 -0.53 -15.59 16 3 C -0.26 -7.26 9.68 -15.06 -0.15 -7.41 16 4 H 0.07 1.90 7.86 -52.48 -0.41 1.49 16 5 C 0.00 0.09 5.06 -17.43 -0.09 0.01 16 6 N -0.90 -26.97 10.67 55.49 0.59 -26.38 16 7 Si 0.91 22.21 29.58 -169.99 -5.03 17.18 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.15 2.87 5.82 -4.04 -0.02 2.84 16 12 C 0.10 1.97 6.00 -4.04 -0.02 1.94 16 13 N -0.73 -11.61 5.51 -61.42 -0.34 -11.95 16 14 C 0.56 10.50 7.77 -12.58 -0.10 10.40 16 15 O -0.51 -12.66 15.57 -14.76 -0.23 -12.88 16 16 C -0.29 -4.11 6.05 -102.72 -0.62 -4.74 16 17 C 0.16 1.31 9.79 -16.54 -0.16 1.15 16 18 N -0.48 -2.41 2.97 -124.40 -0.37 -2.78 16 19 C 0.06 0.02 10.52 59.85 0.63 0.65 16 20 C 0.12 0.69 10.17 -17.09 -0.17 0.52 16 21 C -0.27 -2.69 10.01 -39.47 -0.40 -3.09 16 22 C 0.40 6.48 6.97 -34.68 -0.24 6.23 16 23 O -0.48 -10.32 16.41 -15.18 -0.25 -10.57 16 24 H 0.03 0.85 7.40 -51.93 -0.38 0.47 16 25 H 0.05 1.21 7.21 -51.93 -0.37 0.83 16 26 H 0.00 -0.03 7.83 -51.93 -0.41 -0.43 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 29 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.39 4.24 6.55 -40.82 -0.27 3.97 16 33 H 0.17 0.74 6.35 -52.49 -0.33 0.41 16 34 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 35 H 0.09 -0.06 7.96 -51.93 -0.41 -0.47 16 36 H 0.09 -0.13 7.96 -51.93 -0.41 -0.54 16 37 H 0.16 0.18 7.97 -52.48 -0.42 -0.24 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -41.69 325.62 -7.13 -48.81 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.08 Total: -3.82 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.80 Total: 13.08 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.65 Total: -56.71 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.48 Total: -23.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -41.69 -7.13 -48.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492334912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.731 kcal (2) G-P(sol) polarization free energy of solvation -41.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds