Wall clock time and date at job start Tue Mar 31 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 120.00106 * 2 1 4 4 H 1.08004 * 119.99976 * 200.36445 * 3 2 1 5 5 C 1.38814 * 119.99883 * 20.36795 * 3 2 1 6 6 N 1.31617 * 119.99876 * 14.98479 * 5 3 2 7 7 Si 1.86799 * 119.99931 * 194.98557 * 5 3 2 8 8 H 1.48494 * 109.47200 * 85.00365 * 7 5 3 9 9 H 1.48505 * 109.46960 * 205.00137 * 7 5 3 10 10 H 1.48497 * 109.47026 * 324.99977 * 7 5 3 11 11 C 1.46505 * 120.00017 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46538 * 269.99277 * 11 2 1 13 13 N 1.46501 * 109.46899 * 179.97438 * 12 11 2 14 14 C 1.34773 * 119.99939 * 180.27474 * 13 12 11 15 15 O 1.21622 * 120.00141 * 359.73256 * 14 13 12 16 16 C 1.47295 * 119.99883 * 179.72918 * 14 13 12 17 17 C 1.37981 * 120.88025 * 359.72271 * 16 14 13 18 18 N 1.34352 * 120.37171 * 179.69076 * 17 16 14 19 19 C 1.46498 * 118.80841 * 180.28805 * 18 17 16 20 20 C 1.35582 * 122.38424 * 0.62982 * 18 17 16 21 21 C 1.34864 * 121.80431 * 359.66056 * 20 18 17 22 22 C 1.41674 * 119.33501 * 0.02562 * 21 20 18 23 23 O 1.22093 * 121.06439 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47208 * 275.09494 * 1 2 3 25 25 H 1.09000 * 109.47135 * 35.09063 * 1 2 3 26 26 H 1.08995 * 109.47378 * 155.09405 * 1 2 3 27 27 H 0.96998 * 119.99976 * 179.97438 * 6 5 3 28 28 H 1.08998 * 109.47011 * 149.99925 * 11 2 1 29 29 H 1.08999 * 109.47022 * 29.99429 * 11 2 1 30 30 H 1.08999 * 109.46670 * 60.00128 * 12 11 2 31 31 H 1.08999 * 109.47589 * 299.99805 * 12 11 2 32 32 H 0.97001 * 119.99806 * 0.02562 * 13 12 11 33 33 H 1.07999 * 119.81764 * 359.97438 * 17 16 14 34 34 H 1.09000 * 109.46920 * 270.32668 * 19 18 17 35 35 H 1.08998 * 109.47147 * 30.32783 * 19 18 17 36 36 H 1.08993 * 109.47129 * 150.33001 * 19 18 17 37 37 H 1.08006 * 119.09978 * 179.67991 * 20 18 17 38 38 H 1.07997 * 120.33706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3255 5 6 1.5207 2.3505 0.4184 6 7 0.3876 2.2836 1.0847 7 14 2.2825 4.0127 0.0358 8 1 1.8682 4.4461 -1.3227 9 1 1.8223 5.0099 1.0354 10 1 3.7624 3.9033 0.0908 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1845 -2.9799 1.4413 14 6 3.5166 -3.5667 2.6083 15 8 3.2129 -3.0403 3.6618 16 6 4.2473 -4.8456 2.6078 17 6 4.5959 -5.4616 1.4233 18 7 5.2678 -6.6250 1.4348 19 6 5.6261 -7.2459 0.1571 20 6 5.6204 -7.2487 2.5858 21 6 5.3214 -6.7314 3.7949 22 6 4.6193 -5.5031 3.8700 23 8 4.3319 -5.0066 4.9477 24 1 -0.3633 0.0913 1.0236 25 1 -0.3633 0.8409 -0.5908 26 1 -0.3634 -0.9320 -0.4328 27 1 -0.0517 3.0973 1.3774 28 1 3.1499 -1.1382 -0.5143 29 1 1.6083 -2.0282 -0.5146 30 1 1.5001 -1.8414 1.9556 31 1 3.0417 -0.9515 1.9559 32 1 3.4270 -3.3996 0.6011 33 1 4.3312 -5.0038 0.4817 34 1 4.8225 -7.9094 -0.1623 35 1 5.7774 -6.4705 -0.5939 36 1 6.5450 -7.8197 0.2771 37 1 6.1557 -8.1853 2.5331 38 1 5.6135 -7.2485 4.6969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492334912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:06 Heat of formation + Delta-G solvation = -32.996534 kcal Electronic energy + Delta-G solvation = -21145.601730 eV Core-core repulsion = 17795.700729 eV Total energy + Delta-G solvation = -3349.901001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00160 -40.28061 -38.87708 -37.78043 -35.71290 -33.70908 -33.36549 -32.72863 -29.71475 -27.93832 -27.63000 -26.02487 -24.80764 -23.60557 -22.37829 -21.81263 -19.18598 -18.72675 -18.41215 -17.73651 -16.91775 -16.79565 -16.69511 -16.47992 -16.20277 -15.57158 -15.41123 -15.09949 -14.83076 -14.72688 -14.19078 -14.13775 -14.07799 -13.49941 -13.16377 -13.11696 -12.79463 -12.63996 -12.61939 -12.46025 -12.09168 -11.99329 -11.76268 -11.19571 -10.71135 -10.65888 -10.32270 -10.08936 -9.02788 -8.88864 -7.85057 -5.32710 -0.14925 0.40847 1.46510 1.48287 1.56678 1.58082 1.93782 2.15760 2.53121 2.83517 3.29678 3.34728 3.65178 3.79881 3.84013 3.97794 4.23456 4.25242 4.41947 4.46325 4.63151 4.66358 4.68538 4.82548 4.84362 4.96731 5.07488 5.15397 5.31364 5.38515 5.47723 5.63244 5.72207 5.75060 5.82617 6.30030 6.69240 7.12117 7.12830 7.40896 7.84213 8.25520 9.18946 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.003407 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.441812 B = 8216.185085 C = 8605.206295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.615 5.615 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.972 3.028 8 H -0.278 1.278 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.150 3.850 12 C 0.116 3.884 13 N -0.705 5.705 14 C 0.557 3.443 15 O -0.592 6.592 16 C -0.354 4.354 17 C 0.225 3.775 18 N -0.458 5.458 19 C 0.040 3.960 20 C 0.169 3.831 21 C -0.301 4.301 22 C 0.374 3.626 23 O -0.575 6.575 24 H -0.006 1.006 25 H 0.022 0.978 26 H 0.041 0.959 27 H 0.247 0.753 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.414 0.586 33 H 0.213 0.787 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.228 0.772 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.481 -28.104 -11.696 33.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.337 5.337 3 C -0.397 4.397 4 H 0.098 0.902 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.800 3.200 8 H -0.204 1.204 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.023 3.977 12 C -0.011 4.011 13 N -0.360 5.360 14 C 0.347 3.653 15 O -0.473 6.473 16 C -0.364 4.364 17 C 0.090 3.910 18 N -0.140 5.140 19 C -0.098 4.098 20 C 0.044 3.956 21 C -0.324 4.324 22 C 0.267 3.733 23 O -0.464 6.464 24 H 0.012 0.988 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.253 0.747 33 H 0.230 0.770 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.088 -27.468 -10.583 32.634 hybrid contribution -0.211 1.515 0.673 1.671 sum 13.877 -25.953 -9.910 31.054 Atomic orbital electron populations 1.20604 0.82501 0.96652 0.97411 1.44244 1.02389 1.01735 1.85343 1.19652 0.97537 0.85967 1.36587 0.90211 1.25858 0.98616 1.02178 0.98669 1.70281 1.20447 1.27265 1.40756 0.85208 0.78299 0.79344 0.77149 1.20448 1.22771 1.19307 1.21177 0.97505 0.87590 0.91475 1.21957 0.93798 0.83639 1.01748 1.45638 1.58542 1.23824 1.08022 1.18311 0.78727 0.84746 0.83546 1.90825 1.56412 1.66312 1.33727 1.22124 1.17110 1.00476 0.96714 1.22641 0.85226 0.84357 0.98811 1.43378 1.43136 1.17348 1.10142 1.23066 1.05029 1.01257 0.80459 1.22463 0.92490 0.97438 0.83214 1.22360 1.10306 0.99364 1.00355 1.19179 0.79184 0.87104 0.87831 1.90786 1.54288 1.68389 1.32905 0.98754 0.95954 0.94076 0.94360 0.90972 0.89972 0.95596 0.95944 0.74716 0.77046 0.87908 0.86827 0.85937 0.75539 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.73 9.02 127.77 1.15 9.89 16 2 N -0.61 -30.91 2.93 -726.93 -2.13 -33.03 16 3 C -0.27 -14.85 9.68 84.03 0.81 -14.04 16 4 H 0.08 4.20 7.86 -2.91 -0.02 4.18 16 5 C -0.06 -3.38 5.06 84.86 0.43 -2.95 16 6 N -0.94 -58.40 10.67 21.65 0.23 -58.17 16 7 Si 0.97 46.37 29.58 68.60 2.03 48.40 16 8 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.15 5.61 5.82 86.38 0.50 6.11 16 12 C 0.12 4.87 6.00 86.38 0.52 5.39 16 13 N -0.71 -22.14 5.51 -466.49 -2.57 -24.71 16 14 C 0.56 22.05 7.77 86.63 0.67 22.73 16 15 O -0.59 -32.71 15.57 15.04 0.23 -32.48 16 16 C -0.35 -10.14 6.05 -18.63 -0.11 -10.26 16 17 C 0.23 2.51 9.79 84.25 0.83 3.34 16 18 N -0.46 -1.51 2.97 -547.49 -1.63 -3.13 16 19 C 0.04 -0.33 10.52 127.77 1.34 1.01 16 20 C 0.17 0.92 10.17 83.34 0.85 1.77 16 21 C -0.30 -5.78 10.01 22.34 0.22 -5.55 16 22 C 0.37 12.96 6.97 25.44 0.18 13.13 16 23 O -0.57 -28.43 16.41 13.52 0.22 -28.20 16 24 H -0.01 -0.34 7.40 -2.39 -0.02 -0.36 16 25 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 26 H 0.04 1.69 7.83 -2.39 -0.02 1.67 16 27 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 29 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.41 7.57 6.55 -92.71 -0.61 6.96 16 33 H 0.21 0.36 6.35 -2.91 -0.02 0.34 16 34 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.11 -1.20 7.96 -2.39 -0.02 -1.22 16 36 H 0.12 -1.54 7.96 -2.39 -0.02 -1.56 16 37 H 0.23 -1.50 7.97 -2.91 -0.02 -1.52 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -109.87 325.62 4.26 -105.61 By element: Atomic # 1 Polarization: -5.33 SS G_CDS: 0.47 Total: -4.86 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 7.40 Total: 30.57 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -6.09 Total: -119.05 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: 0.46 Total: -60.68 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -109.87 4.26 -105.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492334912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.616 kcal (2) G-P(sol) polarization free energy of solvation -109.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds