Wall clock time and date at job start Tue Mar 31 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28600 * 124.62207 * 2 1 4 4 C 1.31375 * 108.72030 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.90192 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.05051 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99745 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47282 * 30.00401 * 11 10 8 13 13 C 1.50696 * 109.47213 * 150.00377 * 11 10 8 14 14 H 1.08004 * 120.00205 * 359.97438 * 13 11 10 15 15 C 1.37884 * 120.00471 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99623 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00225 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46948 * 60.00356 * 17 15 13 19 19 H 1.48501 * 109.47181 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47466 * 300.00415 * 17 15 13 21 21 C 1.53000 * 109.47407 * 270.00214 * 11 10 8 22 22 C 1.52995 * 117.49990 * 128.74581 * 21 11 10 23 23 C 1.52999 * 117.49642 * 60.08509 * 21 11 10 24 24 N 1.28600 * 124.61944 * 180.25248 * 2 1 3 25 25 H 1.08999 * 109.46554 * 90.02313 * 1 2 3 26 26 H 1.08998 * 109.46840 * 210.02010 * 1 2 3 27 27 H 1.08993 * 109.46720 * 330.02270 * 1 2 3 28 28 H 1.08004 * 127.04734 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47120 * 4.99498 * 6 5 4 30 30 H 1.08998 * 109.46862 * 245.00300 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 33 33 H 0.96997 * 119.99950 * 179.97438 * 16 15 13 34 34 H 1.09001 * 115.54969 * 274.41981 * 21 11 10 35 35 H 1.09004 * 117.50344 * 0.02562 * 22 21 11 36 36 H 1.09000 * 117.49921 * 145.02120 * 22 21 11 37 37 H 1.08997 * 117.49691 * 214.97912 * 23 21 11 38 38 H 1.08996 * 117.50216 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1957 1.0583 0.0000 4 6 3.4592 0.6983 0.0006 5 6 3.4592 -0.6984 0.0003 6 6 4.6619 -1.6064 0.0002 7 6 4.5705 -2.5742 1.1816 8 6 5.7729 -3.4826 1.1811 9 8 6.6167 -3.3674 0.3240 10 8 5.9071 -4.4190 2.1334 11 6 7.0905 -5.2578 2.0710 12 1 7.9102 -4.6970 1.6219 13 6 7.4777 -5.6848 3.4634 14 1 6.8930 -5.3580 4.3106 15 6 8.5790 -6.4918 3.6560 16 7 9.2912 -6.8893 2.6244 17 14 9.0592 -7.0205 5.3820 18 1 7.9428 -7.7850 5.9941 19 1 10.2695 -7.8785 5.3181 20 1 9.3465 -5.8189 6.2058 21 6 6.7942 -6.4956 1.2219 22 6 7.7707 -6.8275 0.0919 23 6 6.3824 -6.2712 -0.2344 24 7 2.1956 -1.0583 -0.0047 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3632 0.8901 0.5135 28 1 4.3212 1.3491 0.0011 29 1 5.5687 -1.0082 0.0898 30 1 4.6902 -2.1717 -0.9313 31 1 3.6637 -3.1723 1.0920 32 1 4.5422 -2.0088 2.1131 33 1 10.0662 -7.4567 2.7598 34 1 6.3351 -7.3303 1.7518 35 1 8.6246 -6.1643 -0.0465 36 1 7.9539 -7.8805 -0.1220 37 1 5.6529 -6.9585 -0.6628 38 1 6.3223 -5.2418 -0.5876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:44 Heat of formation + Delta-G solvation = 41.067630 kcal Electronic energy + Delta-G solvation = -21290.838375 eV Core-core repulsion = 17944.149038 eV Total energy + Delta-G solvation = -3346.689338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.65494 -39.63173 -36.56392 -35.03856 -34.69206 -33.03653 -32.61788 -31.69066 -28.33408 -27.51437 -25.00918 -23.10899 -22.45417 -21.24182 -21.02388 -19.94007 -19.09485 -17.54409 -17.06457 -16.86461 -16.45472 -15.76119 -15.29055 -14.86329 -14.53800 -14.14640 -13.85894 -13.65690 -13.35954 -13.02506 -12.79604 -12.48242 -12.06653 -11.70451 -11.41295 -11.25825 -11.04586 -10.95520 -10.88794 -10.86356 -10.37911 -10.32855 -10.25627 -9.80712 -9.63709 -9.31759 -9.21535 -8.97881 -8.61478 -8.39536 -6.12381 -4.20177 1.68063 2.18269 2.30918 3.04851 3.28702 3.32490 3.34258 3.67308 3.96463 4.36544 4.68870 4.71343 4.80033 4.97394 5.03725 5.14233 5.19305 5.22788 5.31111 5.61612 5.80092 5.90844 5.99057 6.02460 6.11622 6.20766 6.24283 6.43477 6.55231 6.60086 6.73623 7.04119 7.20285 7.31869 7.45192 7.66684 7.89666 8.16139 8.20815 8.68118 8.93387 9.44327 10.94316 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.003460 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.850170 B = 8090.987115 C = 8527.893172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.163 5.163 3 N -0.294 5.294 4 C -0.021 4.021 5 C 0.010 3.990 6 C -0.017 4.017 7 C -0.110 4.110 8 C 0.455 3.545 9 O -0.521 6.521 10 O -0.353 6.353 11 C 0.249 3.751 12 H 0.049 0.951 13 C -0.529 4.529 14 H 0.068 0.932 15 C 0.069 3.931 16 N -0.873 5.873 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.229 4.229 24 N -0.285 5.285 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.198 0.802 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 11.378 -5.313 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.064 5.064 3 N -0.135 5.135 4 C -0.203 4.203 5 C -0.152 4.152 6 C -0.057 4.057 7 C -0.149 4.149 8 C 0.298 3.702 9 O -0.412 6.412 10 O -0.269 6.269 11 C 0.196 3.804 12 H 0.066 0.934 13 C -0.567 4.567 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.509 5.509 17 Si 0.734 3.266 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.134 4.134 22 C -0.161 4.161 23 C -0.266 4.266 24 N -0.127 5.127 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.215 0.785 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.788 11.263 -5.597 19.413 hybrid contribution 1.257 -0.466 0.793 1.558 sum -13.531 10.797 -4.803 17.965 Atomic orbital electron populations 1.22086 0.70424 1.05774 1.04767 1.47902 1.08812 0.99431 1.50251 1.74017 1.04026 1.16175 1.19317 1.24696 0.94415 0.94757 1.06452 1.23213 0.92537 0.94192 1.05307 1.19699 0.91765 0.94958 0.99235 1.21252 0.96483 0.96657 1.00459 1.23265 0.86871 0.80263 0.79766 1.90572 1.43051 1.70074 1.37534 1.86483 1.48532 1.43360 1.48483 1.20184 0.79590 0.84136 0.96460 0.93365 1.20885 1.12276 1.32438 0.91057 0.91402 1.24878 0.95609 0.95433 0.97619 1.70036 1.17257 1.34159 1.29458 0.86424 0.77865 0.78618 0.83715 1.20051 1.21145 1.20061 1.22592 1.02230 1.00766 0.87778 1.22357 0.91912 0.99582 1.02226 1.23284 0.99584 1.01947 1.01796 1.74032 1.03690 1.15440 1.19556 0.89451 0.87908 0.88088 0.78472 0.88557 0.89055 0.87861 0.88312 0.92601 0.89427 0.89338 0.90871 0.91112 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 11.57 59.85 0.69 1.34 16 2 N -0.16 -1.83 4.35 -16.64 -0.07 -1.91 16 3 N -0.29 -3.52 12.05 30.67 0.37 -3.15 16 4 C -0.02 -0.23 12.15 -17.21 -0.21 -0.44 16 5 C 0.01 0.13 6.61 -82.25 -0.54 -0.42 16 6 C -0.02 -0.22 5.10 -27.89 -0.14 -0.36 16 7 C -0.11 -1.60 5.79 -27.88 -0.16 -1.76 16 8 C 0.45 9.05 7.18 36.01 0.26 9.31 16 9 O -0.52 -11.40 13.03 -18.75 -0.24 -11.64 16 10 O -0.35 -8.27 9.84 -39.26 -0.39 -8.65 16 11 C 0.25 6.53 2.25 -27.88 -0.06 6.47 16 12 H 0.05 1.40 6.91 -51.93 -0.36 1.04 16 13 C -0.53 -14.70 8.88 -34.44 -0.31 -15.00 16 14 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 15 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 16 N -0.87 -24.23 11.43 55.43 0.63 -23.60 16 17 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.11 -2.83 4.47 -90.62 -0.41 -3.23 16 22 C -0.12 -2.86 9.04 -26.70 -0.24 -3.10 16 23 C -0.23 -4.96 9.80 -26.69 -0.26 -5.22 16 24 N -0.28 -3.70 12.04 33.71 0.41 -3.29 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.20 1.57 8.06 -52.48 -0.42 1.14 16 29 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.09 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.09 2.23 8.11 -51.93 -0.42 1.81 16 35 H 0.09 2.18 8.05 -51.93 -0.42 1.77 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -32.59 327.57 -6.10 -38.69 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.25 Total: 3.32 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.48 Total: -10.65 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 1.34 Total: -31.94 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.63 Total: -20.29 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.59 -6.10 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.760 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds