Wall clock time and date at job start Tue Mar 31 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28600 * 124.62207 * 2 1 4 4 C 1.31375 * 108.72030 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.90192 * 0.02562 * 4 3 2 6 6 C 1.50697 * 127.05051 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99745 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.20826 * 119.99939 * 0.02562 * 8 7 6 10 10 O 1.34230 * 120.00046 * 179.97438 * 8 7 6 11 11 C 1.45192 * 117.00018 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47282 * 30.00401 * 11 10 8 13 13 C 1.50696 * 109.47213 * 150.00377 * 11 10 8 14 14 H 1.08004 * 120.00205 * 359.97438 * 13 11 10 15 15 C 1.37884 * 120.00471 * 180.02562 * 13 11 10 16 16 N 1.31511 * 119.99623 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 120.00225 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46948 * 60.00356 * 17 15 13 19 19 H 1.48501 * 109.47181 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47466 * 300.00415 * 17 15 13 21 21 C 1.53000 * 109.47407 * 270.00214 * 11 10 8 22 22 C 1.52995 * 117.49990 * 128.74581 * 21 11 10 23 23 C 1.52999 * 117.49642 * 60.08509 * 21 11 10 24 24 N 1.28600 * 124.61944 * 180.25248 * 2 1 3 25 25 H 1.08999 * 109.46554 * 90.02313 * 1 2 3 26 26 H 1.08998 * 109.46840 * 210.02010 * 1 2 3 27 27 H 1.08993 * 109.46720 * 330.02270 * 1 2 3 28 28 H 1.08004 * 127.04734 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47120 * 4.99498 * 6 5 4 30 30 H 1.08998 * 109.46862 * 245.00300 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 33 33 H 0.96997 * 119.99950 * 179.97438 * 16 15 13 34 34 H 1.09001 * 115.54969 * 274.41981 * 21 11 10 35 35 H 1.09004 * 117.50344 * 0.02562 * 22 21 11 36 36 H 1.09000 * 117.49921 * 145.02120 * 22 21 11 37 37 H 1.08997 * 117.49691 * 214.97912 * 23 21 11 38 38 H 1.08996 * 117.50216 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1957 1.0583 0.0000 4 6 3.4592 0.6983 0.0006 5 6 3.4592 -0.6984 0.0003 6 6 4.6619 -1.6064 0.0002 7 6 4.5705 -2.5742 1.1816 8 6 5.7729 -3.4826 1.1811 9 8 6.6167 -3.3674 0.3240 10 8 5.9071 -4.4190 2.1334 11 6 7.0905 -5.2578 2.0710 12 1 7.9102 -4.6970 1.6219 13 6 7.4777 -5.6848 3.4634 14 1 6.8930 -5.3580 4.3106 15 6 8.5790 -6.4918 3.6560 16 7 9.2912 -6.8893 2.6244 17 14 9.0592 -7.0205 5.3820 18 1 7.9428 -7.7850 5.9941 19 1 10.2695 -7.8785 5.3181 20 1 9.3465 -5.8189 6.2058 21 6 6.7942 -6.4956 1.2219 22 6 7.7707 -6.8275 0.0919 23 6 6.3824 -6.2712 -0.2344 24 7 2.1956 -1.0583 -0.0047 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5141 27 1 -0.3632 0.8901 0.5135 28 1 4.3212 1.3491 0.0011 29 1 5.5687 -1.0082 0.0898 30 1 4.6902 -2.1717 -0.9313 31 1 3.6637 -3.1723 1.0920 32 1 4.5422 -2.0088 2.1131 33 1 10.0662 -7.4567 2.7598 34 1 6.3351 -7.3303 1.7518 35 1 8.6246 -6.1643 -0.0465 36 1 7.9539 -7.8805 -0.1220 37 1 5.6529 -6.9585 -0.6628 38 1 6.3223 -5.2418 -0.5876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:44 Heat of formation + Delta-G solvation = 21.350079 kcal Electronic energy + Delta-G solvation = -21291.693392 eV Core-core repulsion = 17944.149038 eV Total energy + Delta-G solvation = -3347.544355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.50587 -41.34589 -38.34347 -36.70108 -35.84482 -34.68499 -33.88305 -32.68465 -30.01060 -28.64995 -26.20527 -24.99091 -23.28629 -23.05395 -22.33292 -21.34575 -20.86614 -18.97100 -18.41288 -18.04944 -17.80834 -17.33789 -16.98929 -16.39446 -15.72920 -15.63082 -15.38191 -14.73655 -14.45534 -14.30115 -13.89754 -13.55362 -13.50847 -13.19825 -12.97566 -12.94867 -12.78585 -12.64045 -12.23639 -12.15322 -11.96600 -11.78501 -11.76026 -11.40614 -11.23216 -11.14026 -10.90420 -10.56767 -10.40552 -10.06120 -8.19331 -6.36064 0.81628 1.39929 1.43382 1.44637 1.46816 1.53775 1.54565 2.09998 2.46140 3.08035 3.15213 3.27184 3.76759 3.86907 4.10909 4.16264 4.24052 4.33667 4.34228 4.36525 4.43656 4.48466 4.59736 4.60937 4.81785 4.82478 4.83756 5.03658 5.14710 5.17455 5.29652 5.29977 5.43103 5.52262 5.60184 5.79474 5.90351 6.21463 6.67347 7.07413 7.34165 7.34704 8.86644 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.003460 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.850170 B = 8090.987115 C = 8527.893172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.162 5.162 3 N -0.308 5.308 4 C -0.023 4.023 5 C -0.003 4.003 6 C -0.007 4.007 7 C -0.095 4.095 8 C 0.450 3.550 9 O -0.543 6.543 10 O -0.366 6.366 11 C 0.254 3.746 12 H 0.010 0.990 13 C -0.558 4.558 14 H 0.062 0.938 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.973 3.027 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.271 1.271 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.199 4.199 24 N -0.303 5.303 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.224 0.776 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.267 0.733 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.058 11.774 -5.095 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.064 5.064 3 N -0.150 5.150 4 C -0.204 4.204 5 C -0.165 4.165 6 C -0.047 4.047 7 C -0.133 4.133 8 C 0.295 3.705 9 O -0.435 6.435 10 O -0.282 6.282 11 C 0.201 3.799 12 H 0.028 0.972 13 C -0.596 4.596 14 H 0.081 0.919 15 C -0.177 4.177 16 N -0.530 5.530 17 Si 0.797 3.203 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.236 4.236 24 N -0.147 5.147 25 H 0.122 0.878 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.241 0.759 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.062 11.677 -5.393 20.577 hybrid contribution 1.578 -0.520 0.674 1.793 sum -14.484 11.157 -4.719 18.882 Atomic orbital electron populations 1.22538 0.67994 1.07332 1.06386 1.48422 1.10179 0.98775 1.49022 1.74018 1.04447 1.16631 1.19878 1.25151 0.95085 0.94606 1.05566 1.23111 0.92242 0.94668 1.06495 1.19573 0.92606 0.94616 0.97891 1.21305 0.93789 0.95997 1.02212 1.24290 0.87995 0.79713 0.78481 1.90557 1.44312 1.70450 1.38134 1.86475 1.47363 1.44262 1.50109 1.19810 0.79602 0.84560 0.95904 0.97182 1.21179 1.13213 1.33466 0.91729 0.91939 1.25702 0.95225 0.95084 1.01648 1.70148 1.17356 1.34147 1.31367 0.85390 0.77737 0.78321 0.78841 1.19323 1.20389 1.19563 1.22411 1.04008 0.99925 0.88909 1.22276 0.91883 0.99981 1.01844 1.23279 0.98971 1.02251 0.99071 1.73978 1.04173 1.16501 1.20052 0.87791 0.86717 0.86263 0.75919 0.87753 0.89798 0.86904 0.86650 0.92408 0.90473 0.91553 0.89449 0.88034 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 11.57 127.77 1.48 2.41 16 2 N -0.16 -3.34 4.35 -206.55 -0.90 -4.24 16 3 N -0.31 -6.82 12.05 -56.87 -0.69 -7.51 16 4 C -0.02 -0.47 12.15 85.11 1.03 0.56 16 5 C 0.00 -0.08 6.61 42.97 0.28 0.21 16 6 C -0.01 -0.18 5.10 29.85 0.15 -0.03 16 7 C -0.09 -2.66 5.79 29.85 0.17 -2.49 16 8 C 0.45 17.98 7.18 71.24 0.51 18.49 16 9 O -0.54 -24.09 13.03 21.97 0.29 -23.80 16 10 O -0.37 -17.43 9.84 -51.41 -0.51 -17.94 16 11 C 0.25 13.75 2.25 29.85 0.07 13.81 16 12 H 0.01 0.63 6.91 -2.39 -0.02 0.61 16 13 C -0.56 -31.71 8.88 25.60 0.23 -31.48 16 14 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 15 C 0.03 1.40 5.30 84.66 0.45 1.85 16 16 N -0.89 -50.26 11.43 21.45 0.25 -50.02 16 17 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 C -0.13 -6.66 4.47 -10.80 -0.05 -6.71 16 22 C -0.12 -5.71 9.04 30.62 0.28 -5.44 16 23 C -0.20 -8.46 9.80 30.62 0.30 -8.15 16 24 N -0.30 -7.41 12.04 -47.25 -0.57 -7.98 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 26 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.10 2.35 8.09 -2.39 -0.02 2.33 16 30 H 0.08 2.16 8.10 -2.39 -0.02 2.14 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.08 3.97 8.11 -2.39 -0.02 3.95 16 35 H 0.07 3.37 8.05 -2.39 -0.02 3.35 16 36 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.09 3.91 5.37 -2.39 -0.01 3.90 16 Total: -1.00 -70.64 327.57 5.86 -64.77 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.06 Total: 18.72 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.90 Total: -16.97 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: -1.91 Total: -69.75 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.22 Total: -41.74 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -70.64 5.86 -64.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.125 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds