Wall clock time and date at job start Tue Mar 31 2020 00:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47134 * 2 1 4 4 C 1.36903 * 119.99850 * 85.37235 * 3 2 1 5 5 H 1.08006 * 120.00157 * 226.69243 * 4 3 2 6 6 C 1.39023 * 120.00220 * 46.69720 * 4 3 2 7 7 N 1.31376 * 119.99769 * 355.84276 * 6 4 3 8 8 Si 1.86799 * 119.99936 * 175.83760 * 6 4 3 9 9 H 1.48501 * 109.47303 * 60.00324 * 8 6 4 10 10 H 1.48504 * 109.46729 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47300 * 299.99835 * 8 6 4 12 12 C 1.34777 * 119.99693 * 265.37337 * 3 2 1 13 13 O 1.21611 * 120.00293 * 5.01752 * 12 3 2 14 14 C 1.47612 * 119.99847 * 185.01474 * 12 3 2 15 15 C 1.41683 * 126.50184 * 185.30955 * 14 12 3 16 16 C 1.34689 * 105.33684 * 179.84063 * 15 14 12 17 17 N 1.35527 * 107.71702 * 0.38628 * 16 15 14 18 18 N 1.28421 * 109.73557 * 359.77646 * 17 16 15 19 19 C 1.47005 * 123.89996 * 179.82264 * 17 16 15 20 20 C 1.53148 * 108.87980 * 17.66084 * 19 17 16 21 21 C 1.53158 * 109.59617 * 308.85887 * 20 19 17 22 22 C 1.50793 * 127.53631 * 180.02562 * 16 15 14 23 23 H 1.09004 * 109.75333 * 76.15272 * 22 16 15 24 24 O 1.42897 * 109.71971 * 315.53514 * 22 16 15 25 25 H 1.09004 * 109.47318 * 60.00380 * 1 2 3 26 26 H 1.09005 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47265 * 300.00415 * 1 2 3 28 28 H 1.09003 * 109.46577 * 239.99728 * 2 1 3 29 29 H 1.09001 * 109.46693 * 120.00305 * 2 1 3 30 30 H 0.97001 * 119.99871 * 179.97438 * 7 6 4 31 31 H 1.07996 * 127.33135 * 0.02562 * 15 14 12 32 32 H 1.08997 * 109.56649 * 137.47264 * 19 17 16 33 33 H 1.09000 * 109.56750 * 257.72278 * 19 17 16 34 34 H 1.09002 * 109.45035 * 68.89764 * 20 19 17 35 35 H 1.09000 * 109.45052 * 188.84849 * 20 19 17 36 36 H 1.09004 * 109.53921 * 189.47661 * 21 20 19 37 37 H 1.08994 * 109.54016 * 309.64946 * 21 20 19 38 38 H 0.96700 * 114.00210 * 61.24306 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1563 2.0584 1.1818 5 1 1.7808 3.0669 1.2733 6 6 2.7800 1.4481 2.2640 7 7 3.1637 0.1945 2.1797 8 14 3.0724 2.4106 3.8380 9 1 1.7711 2.8701 4.3863 10 1 3.7491 1.5395 4.8323 11 1 3.9301 3.5873 3.5467 12 6 2.3317 1.9851 -1.1634 13 8 2.1236 1.4175 -2.2186 14 6 2.9276 3.3356 -1.1569 15 6 3.2116 4.1370 -2.2903 16 6 3.7393 5.2746 -1.7990 17 7 3.7791 5.1615 -0.4490 18 7 3.3018 4.0230 -0.0950 19 6 4.2971 6.2060 0.4464 20 6 4.3478 7.5327 -0.3170 21 6 5.0851 7.3336 -1.6446 22 6 4.2188 6.4752 -2.5753 23 1 3.3636 7.0562 -2.9206 24 8 4.9942 6.0462 -3.6963 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.5992 -0.2313 2.9347 31 1 3.0387 3.8896 -3.3272 32 1 3.6388 6.3063 1.3093 33 1 5.2990 5.9365 0.7806 34 1 3.3326 7.8773 -0.5137 35 1 4.8738 8.2761 0.2819 36 1 5.2691 8.3027 -2.1083 37 1 6.0347 6.8305 -1.4623 38 1 4.5058 5.4983 -4.3259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542257914.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:25 Heat of formation + Delta-G solvation = -22.657527 kcal Electronic energy + Delta-G solvation = -22579.683240 eV Core-core repulsion = 19230.230572 eV Total energy + Delta-G solvation = -3349.452668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.60769 -40.25218 -38.51432 -36.89517 -36.41628 -33.64821 -32.83046 -32.11744 -30.59569 -29.22049 -26.89273 -25.59885 -24.26003 -23.22052 -22.56603 -21.13585 -20.21270 -19.12727 -18.34982 -17.70470 -17.37640 -16.75697 -16.68662 -16.15734 -15.65379 -15.57377 -15.14974 -15.02166 -14.66986 -14.34346 -14.31180 -13.89393 -13.50943 -13.44445 -13.01970 -12.86218 -12.62827 -12.55678 -12.35350 -12.17644 -12.07556 -11.90622 -11.67662 -11.64553 -11.15680 -10.93193 -10.60819 -9.89977 -9.85358 -9.38143 -8.16906 -6.08707 0.86236 1.18429 1.41989 1.47732 1.54164 1.70045 2.32423 2.65372 2.95571 3.15887 3.21734 3.45766 3.55693 3.79210 3.95149 4.07929 4.29277 4.34713 4.38133 4.55692 4.61979 4.66757 4.69494 4.74129 4.80429 4.92713 5.01326 5.06182 5.07099 5.22826 5.28963 5.43073 5.54072 5.73370 6.02609 6.09247 6.52507 6.70810 7.08968 7.24378 7.57842 7.98173 8.78465 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.006833 C = 0.005227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.376627 B = 4096.879387 C = 5355.709978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.089 3.911 3 N -0.435 5.435 4 C -0.310 4.310 5 H 0.088 0.912 6 C 0.003 3.997 7 N -0.905 5.905 8 Si 0.985 3.015 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.265 1.265 12 C 0.529 3.471 13 O -0.632 6.632 14 C -0.025 4.025 15 C -0.203 4.203 16 C -0.025 4.025 17 N -0.289 5.289 18 N -0.240 5.240 19 C 0.103 3.897 20 C -0.117 4.117 21 C -0.117 4.117 22 C 0.182 3.818 23 H 0.102 0.898 24 O -0.567 6.567 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.115 0.885 30 H 0.271 0.729 31 H 0.161 0.839 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 17.140 -2.278 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 N -0.152 5.152 4 C -0.439 4.439 5 H 0.106 0.894 6 C -0.198 4.198 7 N -0.544 5.544 8 Si 0.808 3.192 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.189 1.189 12 C 0.318 3.682 13 O -0.519 6.519 14 C -0.184 4.184 15 C -0.232 4.232 16 C -0.150 4.150 17 N -0.080 5.080 18 N -0.075 5.075 19 C -0.015 4.015 20 C -0.155 4.155 21 C -0.155 4.155 22 C 0.121 3.879 23 H 0.120 0.880 24 O -0.374 6.374 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.132 0.868 37 H 0.084 0.916 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.218 17.068 -1.069 17.401 hybrid contribution -0.395 -0.881 -0.423 1.054 sum 2.823 16.186 -1.492 16.498 Atomic orbital electron populations 1.21875 0.95769 1.01729 1.00272 1.21824 0.94171 0.84488 1.02941 1.43587 1.54054 1.12380 1.05157 1.19506 1.36800 0.99166 0.88411 0.89434 1.26332 0.94155 0.96340 1.02971 1.69661 1.39535 1.12136 1.33093 0.85132 0.79012 0.78353 0.76717 1.18862 1.20794 1.18936 1.17894 0.80904 0.85149 0.84211 1.90541 1.61601 1.67412 1.32384 1.21940 1.08441 0.96921 0.91087 1.21395 1.07938 0.94146 0.99682 1.22583 1.06112 1.00490 0.85778 1.46584 1.43143 1.12323 1.05964 1.74169 1.12899 0.94296 1.26184 1.22582 1.00967 0.85042 0.92945 1.21930 1.03604 0.94189 0.95776 1.21716 0.98332 1.01104 0.94341 1.20565 0.94561 0.87599 0.85155 0.88043 1.86463 1.42747 1.73011 1.35147 0.94880 0.90394 0.93207 0.94678 0.86806 0.91931 0.82167 0.87747 0.88727 0.89419 0.84556 0.86845 0.91624 0.75436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.16 10.22 71.98 0.74 -5.43 16 2 C 0.09 4.69 5.80 86.38 0.50 5.19 16 3 N -0.43 -24.58 2.52 -639.04 -1.61 -26.19 16 4 C -0.31 -17.06 7.40 84.09 0.62 -16.44 16 5 H 0.09 4.81 6.77 -2.91 -0.02 4.79 16 6 C 0.00 0.15 5.41 84.95 0.46 0.61 16 7 N -0.91 -50.39 10.77 21.68 0.23 -50.16 16 8 Si 0.98 41.76 29.55 68.60 2.03 43.79 16 9 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.53 30.08 7.63 86.72 0.66 30.74 16 13 O -0.63 -37.71 16.49 -4.07 -0.07 -37.78 16 14 C -0.02 -1.24 6.84 42.46 0.29 -0.95 16 15 C -0.20 -8.13 10.35 22.31 0.23 -7.89 16 16 C -0.02 -0.80 6.29 41.20 0.26 -0.54 16 17 N -0.29 -10.10 3.74 -333.31 -1.25 -11.35 16 18 N -0.24 -11.08 9.20 -48.08 -0.44 -11.52 16 19 C 0.10 2.36 7.17 86.33 0.62 2.98 16 20 C -0.12 -1.52 5.91 30.70 0.18 -1.34 16 21 C -0.12 -1.83 5.64 30.79 0.17 -1.66 16 22 C 0.18 3.85 3.83 30.02 0.12 3.97 16 23 H 0.10 1.66 8.14 -2.38 -0.02 1.65 16 24 O -0.57 -12.71 13.29 -148.98 -1.98 -14.69 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.03 1.91 7.36 -2.39 -0.02 1.89 16 29 H 0.11 6.32 5.19 -2.39 -0.01 6.31 16 30 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 31 H 0.16 5.80 8.04 -2.91 -0.02 5.78 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 35 H 0.14 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 38 H 0.40 6.81 8.77 -74.06 -0.65 6.16 16 Total: -1.00 -76.95 315.20 2.20 -74.75 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.43 Total: 23.90 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.85 Total: 9.24 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -3.07 Total: -99.21 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -2.05 Total: -52.46 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -76.95 2.20 -74.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542257914.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.089 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds