Wall clock time and date at job start Tue Mar 31 2020 00:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47429 * 2 1 4 4 C 1.36918 * 119.99946 * 94.17210 * 3 2 1 5 5 H 1.07994 * 120.00306 * 215.89988 * 4 3 2 6 6 C 1.39025 * 119.99568 * 35.89702 * 4 3 2 7 7 N 1.31380 * 120.00151 * 23.43990 * 6 4 3 8 8 Si 1.86796 * 119.99717 * 203.43540 * 6 4 3 9 9 H 1.48495 * 109.47400 * 60.00568 * 8 6 4 10 10 H 1.48499 * 109.47281 * 299.99862 * 8 6 4 11 11 H 1.48506 * 109.46927 * 180.02562 * 8 6 4 12 12 C 1.34773 * 120.00503 * 274.18119 * 3 2 1 13 13 O 1.21603 * 120.00367 * 183.86963 * 12 3 2 14 14 C 1.47614 * 119.99804 * 3.86731 * 12 3 2 15 15 C 1.41681 * 126.50632 * 181.67899 * 14 12 3 16 16 C 1.34684 * 105.33652 * 179.97438 * 15 14 12 17 17 N 1.35522 * 107.72784 * 0.03236 * 16 15 14 18 18 N 1.28427 * 109.72776 * 359.71327 * 17 16 15 19 19 C 1.46998 * 123.89994 * 179.89890 * 17 16 15 20 20 C 1.53146 * 108.89002 * 342.34427 * 19 17 16 21 21 C 1.53155 * 109.59831 * 51.12631 * 20 19 17 22 22 C 1.50805 * 127.52993 * 180.02562 * 16 15 14 23 23 H 1.08993 * 109.71377 * 284.20223 * 22 16 15 24 24 O 1.42901 * 109.71365 * 44.79913 * 22 16 15 25 25 H 1.08994 * 109.47140 * 59.99909 * 1 2 3 26 26 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46898 * 299.99527 * 1 2 3 28 28 H 1.09003 * 109.47144 * 240.00102 * 2 1 3 29 29 H 1.09000 * 109.47388 * 120.00465 * 2 1 3 30 30 H 0.97008 * 119.99981 * 4.40746 * 7 6 4 31 31 H 1.07994 * 127.32972 * 359.91660 * 15 14 12 32 32 H 1.09006 * 109.56806 * 222.52605 * 19 17 16 33 33 H 1.08999 * 109.66835 * 102.22916 * 19 17 16 34 34 H 1.08997 * 109.45036 * 291.08381 * 20 19 17 35 35 H 1.08996 * 109.42599 * 171.15095 * 20 19 17 36 36 H 1.08997 * 109.53879 * 170.52993 * 21 20 19 37 37 H 1.08996 * 109.54018 * 50.26822 * 21 20 19 38 38 H 0.96698 * 114.00046 * 300.00204 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3280 1.9978 1.1826 5 1 2.1272 3.0511 1.3112 6 6 2.9008 1.2679 2.2180 7 7 3.5594 0.1618 1.9559 8 14 2.7340 1.8601 3.9817 9 1 1.2962 1.9316 4.3460 10 1 3.3452 3.2072 4.1116 11 1 3.4286 0.9123 4.8898 12 6 2.1629 2.0450 -1.1640 13 8 2.6343 3.1659 -1.1704 14 6 1.7488 1.4113 -2.4313 15 6 1.8682 1.9660 -3.7295 16 6 1.3645 1.0351 -4.5624 17 7 0.9643 -0.0186 -3.8099 18 7 1.2023 0.2186 -2.5704 19 6 0.3563 -1.2372 -4.3632 20 6 -0.1399 -0.9436 -5.7820 21 6 0.9866 -0.3024 -6.5978 22 6 1.2485 1.1122 -6.0640 23 1 0.4213 1.7678 -6.3357 24 8 2.4657 1.6180 -6.6161 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7011 -0.1120 1.0361 31 1 2.2755 2.9305 -3.9946 32 1 -0.4833 -1.5423 -3.7386 33 1 1.0976 -2.0357 -4.3936 34 1 -0.9884 -0.2611 -5.7357 35 1 -0.4483 -1.8743 -6.2580 36 1 0.6922 -0.2478 -7.6458 37 1 1.8921 -0.9016 -6.5028 38 1 2.7012 2.5026 -6.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542257915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:28 Heat of formation + Delta-G solvation = 8.379133 kcal Electronic energy + Delta-G solvation = -22564.427934 eV Core-core repulsion = 19216.321117 eV Total energy + Delta-G solvation = -3348.106817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.46506 -38.50015 -37.57812 -35.64194 -35.11275 -31.99749 -31.75471 -29.91545 -29.36172 -28.29926 -25.26189 -23.86298 -22.90659 -22.16347 -21.56655 -19.64873 -18.85260 -17.92630 -17.23052 -16.48801 -16.11474 -15.67406 -15.00827 -14.55697 -14.37889 -13.98101 -13.96616 -13.63261 -13.39889 -13.27407 -12.86530 -12.68047 -12.35268 -11.99098 -11.61533 -11.52252 -11.22852 -11.12749 -11.04810 -10.90031 -10.64461 -10.34017 -10.16595 -10.02173 -9.60860 -8.91828 -8.63901 -8.54853 -8.53714 -7.63621 -6.56272 -3.92186 2.10680 2.57488 2.66673 3.38598 3.39605 3.58991 3.87405 4.16639 4.23777 4.38943 4.44271 4.45956 4.65407 4.84874 4.98263 5.04314 5.09914 5.19510 5.30309 5.33394 5.46005 5.54110 5.79460 5.81122 6.01958 6.08979 6.19481 6.33547 6.40769 6.68378 6.81168 6.91796 6.98648 7.25134 7.39491 7.99389 8.12462 8.38097 8.75954 8.97776 9.43769 9.96991 10.67132 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004869 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.184715 B = 5749.280043 C = 6289.043137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 N -0.429 5.429 4 C -0.388 4.388 5 H 0.086 0.914 6 C 0.007 3.993 7 N -0.874 5.874 8 Si 1.079 2.921 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.522 3.478 13 O -0.576 6.576 14 C 0.018 3.982 15 C -0.178 4.178 16 C -0.037 4.037 17 N -0.292 5.292 18 N -0.257 5.257 19 C 0.122 3.878 20 C -0.131 4.131 21 C -0.119 4.119 22 C 0.181 3.819 23 H 0.076 0.924 24 O -0.556 6.556 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.276 0.724 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 -5.060 -15.535 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 N -0.148 5.148 4 C -0.516 4.516 5 H 0.103 0.897 6 C -0.200 4.200 7 N -0.509 5.509 8 Si 0.905 3.095 9 H -0.210 1.210 10 H -0.208 1.208 11 H -0.205 1.205 12 C 0.310 3.690 13 O -0.458 6.458 14 C -0.143 4.143 15 C -0.207 4.207 16 C -0.161 4.161 17 N -0.081 5.081 18 N -0.091 5.091 19 C 0.002 3.998 20 C -0.169 4.169 21 C -0.157 4.157 22 C 0.120 3.880 23 H 0.093 0.907 24 O -0.361 6.361 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.172 0.828 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -8.501 -6.546 -13.691 17.394 hybrid contribution -0.124 1.478 -1.770 2.309 sum -8.625 -5.069 -15.461 18.415 Atomic orbital electron populations 1.21927 0.97318 0.99976 1.01047 1.21834 0.93654 0.85177 1.03214 1.43534 1.54349 1.12163 1.04705 1.20334 1.43374 0.97799 0.90120 0.89671 1.26492 0.92365 0.95706 1.05480 1.70729 1.31744 1.24534 1.23856 0.83354 0.76744 0.75920 0.73485 1.20992 1.20838 1.20459 1.17081 0.83502 0.87208 0.81246 1.90609 1.49500 1.19985 1.85711 1.22629 1.03745 0.91717 0.96209 1.21207 1.07154 1.01019 0.91273 1.21931 1.07245 0.91021 0.95908 1.45814 1.44566 1.14039 1.03722 1.73901 1.18292 1.18014 0.98887 1.22017 0.99032 0.84041 0.94721 1.21877 0.98800 1.02906 0.93326 1.21650 0.99391 0.94450 1.00208 1.20221 0.87497 0.95881 0.84369 0.90657 1.86482 1.41618 1.38108 1.69917 0.93448 0.93522 0.93155 0.90641 0.89243 0.91284 0.82791 0.88285 0.89250 0.90306 0.88335 0.89804 0.90224 0.76516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.69 37.16 0.36 -2.60 16 2 C 0.09 2.03 4.65 -4.04 -0.02 2.01 16 3 N -0.43 -11.74 2.33 -115.96 -0.27 -12.01 16 4 C -0.39 -11.34 8.87 -14.99 -0.13 -11.47 16 5 H 0.09 2.60 7.79 -52.49 -0.41 2.19 16 6 C 0.01 0.18 4.87 -17.45 -0.09 0.10 16 7 N -0.87 -25.22 12.24 55.50 0.68 -24.54 16 8 Si 1.08 24.38 29.98 -169.99 -5.10 19.28 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.52 14.22 7.60 -12.44 -0.09 14.12 16 13 O -0.58 -17.35 16.80 5.27 0.09 -17.26 16 14 C 0.02 0.39 6.61 -82.69 -0.55 -0.15 16 15 C -0.18 -3.32 10.33 -39.53 -0.41 -3.73 16 16 C -0.04 -0.56 6.29 -82.17 -0.52 -1.08 16 17 N -0.29 -4.53 3.74 -56.71 -0.21 -4.74 16 18 N -0.26 -5.04 7.06 33.45 0.24 -4.80 16 19 C 0.12 1.23 7.17 -3.69 -0.03 1.21 16 20 C -0.13 -0.92 5.91 -26.58 -0.16 -1.07 16 21 C -0.12 -1.02 5.65 -26.42 -0.15 -1.17 16 22 C 0.18 1.99 3.84 -27.60 -0.11 1.88 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 O -0.56 -6.41 13.30 -35.23 -0.47 -6.87 16 25 H 0.05 0.97 6.69 -51.93 -0.35 0.62 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.74 5.60 -51.93 -0.29 1.45 16 29 H 0.09 2.29 5.34 -51.93 -0.28 2.01 16 30 H 0.28 8.11 6.89 -40.82 -0.28 7.83 16 31 H 0.15 2.63 8.02 -52.49 -0.42 2.21 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.39 3.39 8.72 45.56 0.40 3.79 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -36.18 310.53 -6.47 -42.66 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.23 Total: 5.56 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.88 Total: -1.95 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.43 Total: -46.09 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.38 Total: -24.13 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.10 Total: 19.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.18 -6.47 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542257915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.034 kcal (2) G-P(sol) polarization free energy of solvation -36.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds