Wall clock time and date at job start Tue Mar 31 2020 00:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47429 * 2 1 4 4 C 1.36918 * 119.99946 * 94.17210 * 3 2 1 5 5 H 1.07994 * 120.00306 * 215.89988 * 4 3 2 6 6 C 1.39025 * 119.99568 * 35.89702 * 4 3 2 7 7 N 1.31380 * 120.00151 * 23.43990 * 6 4 3 8 8 Si 1.86796 * 119.99717 * 203.43540 * 6 4 3 9 9 H 1.48495 * 109.47400 * 60.00568 * 8 6 4 10 10 H 1.48499 * 109.47281 * 299.99862 * 8 6 4 11 11 H 1.48506 * 109.46927 * 180.02562 * 8 6 4 12 12 C 1.34773 * 120.00503 * 274.18119 * 3 2 1 13 13 O 1.21603 * 120.00367 * 183.86963 * 12 3 2 14 14 C 1.47614 * 119.99804 * 3.86731 * 12 3 2 15 15 C 1.41681 * 126.50632 * 181.67899 * 14 12 3 16 16 C 1.34684 * 105.33652 * 179.97438 * 15 14 12 17 17 N 1.35522 * 107.72784 * 0.03236 * 16 15 14 18 18 N 1.28427 * 109.72776 * 359.71327 * 17 16 15 19 19 C 1.46998 * 123.89994 * 179.89890 * 17 16 15 20 20 C 1.53146 * 108.89002 * 342.34427 * 19 17 16 21 21 C 1.53155 * 109.59831 * 51.12631 * 20 19 17 22 22 C 1.50805 * 127.52993 * 180.02562 * 16 15 14 23 23 H 1.08993 * 109.71377 * 284.20223 * 22 16 15 24 24 O 1.42901 * 109.71365 * 44.79913 * 22 16 15 25 25 H 1.08994 * 109.47140 * 59.99909 * 1 2 3 26 26 H 1.08996 * 109.46908 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46898 * 299.99527 * 1 2 3 28 28 H 1.09003 * 109.47144 * 240.00102 * 2 1 3 29 29 H 1.09000 * 109.47388 * 120.00465 * 2 1 3 30 30 H 0.97008 * 119.99981 * 4.40746 * 7 6 4 31 31 H 1.07994 * 127.32972 * 359.91660 * 15 14 12 32 32 H 1.09006 * 109.56806 * 222.52605 * 19 17 16 33 33 H 1.08999 * 109.66835 * 102.22916 * 19 17 16 34 34 H 1.08997 * 109.45036 * 291.08381 * 20 19 17 35 35 H 1.08996 * 109.42599 * 171.15095 * 20 19 17 36 36 H 1.08997 * 109.53879 * 170.52993 * 21 20 19 37 37 H 1.08996 * 109.54018 * 50.26822 * 21 20 19 38 38 H 0.96698 * 114.00046 * 300.00204 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3280 1.9978 1.1826 5 1 2.1272 3.0511 1.3112 6 6 2.9008 1.2679 2.2180 7 7 3.5594 0.1618 1.9559 8 14 2.7340 1.8601 3.9817 9 1 1.2962 1.9316 4.3460 10 1 3.3452 3.2072 4.1116 11 1 3.4286 0.9123 4.8898 12 6 2.1629 2.0450 -1.1640 13 8 2.6343 3.1659 -1.1704 14 6 1.7488 1.4113 -2.4313 15 6 1.8682 1.9660 -3.7295 16 6 1.3645 1.0351 -4.5624 17 7 0.9643 -0.0186 -3.8099 18 7 1.2023 0.2186 -2.5704 19 6 0.3563 -1.2372 -4.3632 20 6 -0.1399 -0.9436 -5.7820 21 6 0.9866 -0.3024 -6.5978 22 6 1.2485 1.1122 -6.0640 23 1 0.4213 1.7678 -6.3357 24 8 2.4657 1.6180 -6.6161 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.7011 -0.1120 1.0361 31 1 2.2755 2.9305 -3.9946 32 1 -0.4833 -1.5423 -3.7386 33 1 1.0976 -2.0357 -4.3936 34 1 -0.9884 -0.2611 -5.7357 35 1 -0.4483 -1.8743 -6.2580 36 1 0.6922 -0.2478 -7.6458 37 1 1.8921 -0.9016 -6.5028 38 1 2.7012 2.5026 -6.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542257915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:27 Heat of formation + Delta-G solvation = -19.077746 kcal Electronic energy + Delta-G solvation = -22565.618554 eV Core-core repulsion = 19216.321117 eV Total energy + Delta-G solvation = -3349.297437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.82273 -40.43748 -38.58803 -37.27535 -36.49771 -34.03189 -32.92744 -31.37770 -31.15923 -29.33996 -27.15049 -25.19847 -24.39548 -23.48642 -23.05458 -21.10288 -20.29676 -19.31954 -18.83347 -17.69016 -17.54703 -17.03990 -16.67381 -16.14204 -15.72535 -15.47964 -15.30924 -15.15230 -14.93600 -14.58749 -14.42858 -14.04505 -13.85438 -13.10432 -13.06851 -12.86281 -12.78235 -12.42228 -12.22714 -12.09764 -12.02087 -11.92250 -11.91104 -11.65816 -11.19948 -10.90005 -10.68632 -10.04878 -9.98343 -9.77055 -8.80146 -6.19445 0.62728 1.05289 1.51533 1.55257 1.59926 1.82953 2.37619 2.46394 2.85484 3.04381 3.14288 3.30385 3.44870 3.70052 3.79573 3.99542 4.17923 4.25490 4.29200 4.31679 4.51529 4.52701 4.60635 4.69565 4.70107 4.86725 4.91561 4.95840 5.01665 5.06171 5.20622 5.22332 5.41143 5.72939 5.83290 5.89350 6.57345 6.63823 6.79939 6.98505 7.30163 7.84059 8.41204 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.004869 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.184715 B = 5749.280043 C = 6289.043137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.092 3.908 3 N -0.444 5.444 4 C -0.421 4.421 5 H 0.059 0.941 6 C -0.025 4.025 7 N -0.884 5.884 8 Si 1.129 2.871 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.271 1.271 12 C 0.512 3.488 13 O -0.623 6.623 14 C -0.029 4.029 15 C -0.202 4.202 16 C -0.014 4.014 17 N -0.277 5.277 18 N -0.261 5.261 19 C 0.103 3.897 20 C -0.120 4.120 21 C -0.118 4.118 22 C 0.179 3.821 23 H 0.102 0.898 24 O -0.567 6.567 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.261 0.739 31 H 0.157 0.843 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 -6.983 -17.566 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 N -0.163 5.163 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.228 4.228 7 N -0.519 5.519 8 Si 0.947 3.053 9 H -0.188 1.188 10 H -0.201 1.201 11 H -0.195 1.195 12 C 0.301 3.699 13 O -0.509 6.509 14 C -0.187 4.187 15 C -0.231 4.231 16 C -0.139 4.139 17 N -0.068 5.068 18 N -0.098 5.098 19 C -0.015 4.015 20 C -0.157 4.157 21 C -0.156 4.156 22 C 0.119 3.881 23 H 0.119 0.881 24 O -0.374 6.374 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.175 0.825 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.156 0.844 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.468 -8.503 -15.739 20.726 hybrid contribution 0.467 1.998 -1.345 2.454 sum -10.001 -6.505 -17.084 20.838 Atomic orbital electron populations 1.21796 0.94655 1.02056 1.00309 1.21865 0.95734 0.83135 1.02387 1.43779 1.54748 1.13311 1.04414 1.20362 1.45287 0.97254 0.91932 0.92349 1.28009 0.90776 0.94943 1.09034 1.70850 1.32850 1.25343 1.22824 0.82773 0.78022 0.75814 0.68674 1.18783 1.20051 1.19540 1.17769 0.82460 0.86772 0.82866 1.90535 1.51466 1.22003 1.86932 1.22006 1.07655 0.93779 0.95266 1.21379 1.08806 1.02370 0.90502 1.22546 1.04182 0.89288 0.97886 1.46435 1.42434 1.15355 1.02552 1.73703 1.17990 1.16711 1.01370 1.22700 0.99789 0.82159 0.96862 1.21947 0.98097 1.04939 0.90762 1.21738 0.99569 0.92300 1.01961 1.20645 0.88085 0.98358 0.81041 0.88073 1.86472 1.42105 1.39048 1.69752 0.93580 0.89879 0.94394 0.90081 0.91215 0.92837 0.82529 0.86770 0.87898 0.89538 0.84367 0.87023 0.91361 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.69 71.98 0.70 -4.60 16 2 C 0.09 4.50 4.65 86.38 0.40 4.90 16 3 N -0.44 -25.55 2.33 -639.05 -1.49 -27.04 16 4 C -0.42 -25.84 8.87 84.09 0.75 -25.09 16 5 H 0.06 3.81 7.79 -2.91 -0.02 3.79 16 6 C -0.03 -1.45 4.87 84.95 0.41 -1.04 16 7 N -0.88 -52.40 12.24 21.68 0.27 -52.13 16 8 Si 1.13 49.70 29.98 68.60 2.06 51.75 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 C 0.51 29.52 7.60 86.72 0.66 30.18 16 13 O -0.62 -40.19 16.80 -4.04 -0.07 -40.26 16 14 C -0.03 -1.34 6.61 42.46 0.28 -1.06 16 15 C -0.20 -7.65 10.33 22.30 0.23 -7.42 16 16 C -0.01 -0.39 6.29 41.21 0.26 -0.13 16 17 N -0.28 -8.03 3.74 -333.32 -1.25 -9.27 16 18 N -0.26 -10.16 7.06 -48.07 -0.34 -10.50 16 19 C 0.10 1.67 7.17 86.33 0.62 2.29 16 20 C -0.12 -1.04 5.91 30.69 0.18 -0.86 16 21 C -0.12 -1.46 5.65 30.80 0.17 -1.29 16 22 C 0.18 3.33 3.84 30.03 0.12 3.45 16 23 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 24 O -0.57 -11.72 13.30 -148.98 -1.98 -13.70 16 25 H 0.05 1.88 6.69 -2.39 -0.02 1.86 16 26 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 3.82 5.60 -2.39 -0.01 3.81 16 29 H 0.07 3.67 5.34 -2.39 -0.01 3.66 16 30 H 0.26 16.00 6.89 -92.70 -0.64 15.36 16 31 H 0.16 5.58 8.02 -2.91 -0.02 5.56 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 0.71 8.11 -2.39 -0.02 0.69 16 35 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.40 6.40 8.72 -74.06 -0.65 5.75 16 Total: -1.00 -84.77 310.53 2.55 -82.22 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.57 Total: 19.61 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 4.78 Total: -0.67 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -2.81 Total: -98.95 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -2.05 Total: -53.96 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.06 Total: 51.75 kcal Total: -84.77 2.55 -82.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542257915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.146 kcal (2) G-P(sol) polarization free energy of solvation -84.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds