Wall clock time and date at job start Tue Mar 31 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40090 * 126.04001 * 2 1 4 4 C 1.30834 * 108.20563 * 179.97438 * 3 2 1 5 5 C 1.39874 * 108.20368 * 359.77783 * 4 3 2 6 6 C 1.34946 * 126.03582 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12648 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.46527 * 58.18671 * 7 6 2 9 9 N 1.46899 * 109.47249 * 178.18326 * 7 6 2 10 10 C 1.46903 * 111.00350 * 207.43599 * 9 7 6 11 11 C 1.52991 * 109.47326 * 181.90339 * 10 9 7 12 12 C 1.50699 * 115.55255 * 273.13541 * 11 10 9 13 13 H 1.08000 * 120.00008 * 115.99483 * 12 11 10 14 14 C 1.37881 * 119.99969 * 296.00426 * 12 11 10 15 15 N 1.31512 * 119.99921 * 177.72586 * 14 12 11 16 16 Si 1.86799 * 120.00049 * 357.72357 * 14 12 11 17 17 H 1.48495 * 109.47245 * 92.12906 * 16 14 12 18 18 H 1.48499 * 109.47452 * 212.13377 * 16 14 12 19 19 H 1.48508 * 109.46926 * 332.13208 * 16 14 12 20 20 C 1.53000 * 117.50058 * 127.42868 * 11 10 9 21 21 C 1.52998 * 117.50022 * 58.80455 * 11 10 9 22 22 C 1.50693 * 109.47389 * 298.18518 * 7 6 2 23 23 O 1.20822 * 120.00145 * 240.00020 * 22 7 6 24 24 O 1.34227 * 119.99946 * 59.72281 * 22 7 6 25 25 H 1.09003 * 109.47107 * 270.02786 * 1 2 3 26 26 H 1.09007 * 109.46907 * 30.01798 * 1 2 3 27 27 H 1.08994 * 109.47608 * 150.02324 * 1 2 3 28 28 H 1.08001 * 125.90063 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.04044 * 180.23502 * 5 4 3 30 30 H 1.00894 * 111.00013 * 83.47802 * 9 7 6 31 31 H 1.08999 * 109.46670 * 301.90324 * 10 9 7 32 32 H 1.09003 * 109.47097 * 61.90239 * 10 9 7 33 33 H 0.97004 * 119.99802 * 179.97438 * 15 14 12 34 34 H 1.09004 * 117.49430 * 359.97438 * 20 11 10 35 35 H 1.08994 * 117.50410 * 145.02140 * 20 11 10 36 36 H 1.09003 * 117.50312 * 214.97672 * 21 11 10 37 37 H 1.09004 * 117.50016 * 359.97438 * 21 11 10 38 38 H 0.96703 * 117.00349 * 180.27285 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 1.1699 -2.7063 -0.8713 9 7 2.9649 -3.4160 -0.0420 10 6 2.6266 -4.6976 -0.6754 11 6 3.8520 -5.6134 -0.6599 12 6 4.7963 -5.4555 -1.8237 13 1 5.8056 -5.1091 -1.6570 14 6 4.3717 -5.7531 -3.1013 15 7 5.1813 -5.5728 -4.1219 16 14 2.6467 -6.4123 -3.3824 17 1 1.7230 -5.2819 -3.6544 18 1 2.6533 -7.3368 -4.5445 19 1 2.1924 -7.1424 -2.1716 20 6 3.6777 -7.0170 -0.0766 21 6 4.4600 -5.9570 0.7014 22 6 1.0050 -2.7976 1.2544 23 8 1.3752 -3.6458 2.0312 24 8 -0.1088 -2.0935 1.5101 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 4.4055 1.3709 0.0011 29 1 4.4210 -1.2964 0.0114 30 1 3.3458 -3.5585 0.8814 31 1 1.8126 -5.1705 -0.1262 32 1 2.3166 -4.5230 -1.7058 33 1 4.8826 -5.7825 -5.0207 34 1 2.6899 -7.2878 0.2965 35 1 4.2458 -7.8266 -0.5346 36 1 5.5429 -6.0693 0.7552 37 1 3.9871 -5.5303 1.5860 38 1 -0.5812 -2.3008 2.3280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594594379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:58 Heat of formation + Delta-G solvation = 28.671477 kcal Electronic energy + Delta-G solvation = -22456.035704 eV Core-core repulsion = 19108.808829 eV Total energy + Delta-G solvation = -3347.226875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.39009 -40.23164 -37.62389 -36.39492 -34.87435 -33.10153 -32.07794 -30.47570 -27.51064 -26.61795 -25.96887 -24.09419 -22.09990 -21.41814 -20.80479 -19.70616 -19.00494 -18.27802 -17.51783 -17.23792 -16.11416 -15.59838 -15.14883 -14.90536 -14.50150 -14.36637 -13.93381 -13.72544 -13.40240 -13.12082 -12.90672 -12.66971 -12.44135 -12.16001 -12.03887 -11.79500 -11.69960 -11.03232 -10.94880 -10.62653 -10.54459 -10.53827 -10.17557 -9.50889 -9.17755 -9.07036 -8.70482 -8.47978 -8.32004 -8.21455 -6.06301 -4.05237 1.77352 2.04702 2.57912 2.79480 3.12059 3.22686 3.36120 3.41699 4.12363 4.42629 4.48417 4.68440 4.93711 4.95021 5.09160 5.23879 5.29218 5.31703 5.54253 5.73374 5.82965 5.94013 5.97967 6.06337 6.16591 6.23264 6.31985 6.44504 6.53232 6.77188 6.87406 6.97156 7.08642 7.15499 7.30493 7.56288 7.64160 7.78918 7.83236 8.56148 8.98359 9.56447 11.06014 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.006073 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.657649 B = 4609.235062 C = 5067.367044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.368 5.368 3 N -0.298 5.298 4 C 0.039 3.961 5 C -0.223 4.223 6 C 0.081 3.919 7 C 0.163 3.837 8 H 0.125 0.875 9 N -0.626 5.626 10 C 0.089 3.911 11 C 0.007 3.993 12 C -0.468 4.468 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.898 5.898 16 Si 0.866 3.134 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.252 1.252 20 C -0.194 4.194 21 C -0.181 4.181 22 C 0.451 3.549 23 O -0.502 6.502 24 O -0.517 6.517 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.184 0.816 29 H 0.162 0.838 30 H 0.357 0.643 31 H 0.016 0.984 32 H 0.074 0.926 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 8.577 9.765 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.152 5.152 3 N -0.120 5.120 4 C -0.146 4.146 5 C -0.252 4.252 6 C -0.047 4.047 7 C 0.048 3.952 8 H 0.143 0.857 9 N -0.259 5.259 10 C -0.040 4.040 11 C 0.005 3.995 12 C -0.506 4.506 13 H 0.096 0.904 14 C -0.125 4.125 15 N -0.535 5.535 16 Si 0.694 3.306 17 H -0.208 1.208 18 H -0.219 1.219 19 H -0.176 1.176 20 C -0.232 4.232 21 C -0.218 4.218 22 C 0.290 3.710 23 O -0.388 6.388 24 O -0.328 6.328 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.201 0.799 29 H 0.179 0.821 30 H 0.179 0.821 31 H 0.034 0.966 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.513 9.679 8.842 17.447 hybrid contribution -1.313 -1.669 0.905 2.308 sum -12.826 8.011 9.747 17.991 Atomic orbital electron populations 1.21859 0.74330 1.03528 1.03560 1.48418 1.06463 1.02966 1.57352 1.77311 1.02055 1.07610 1.25058 1.23878 0.95078 0.95311 1.00359 1.21402 0.96896 0.94355 1.12525 1.20271 0.91876 0.87890 1.04621 1.19771 0.91806 0.90527 0.93094 0.85742 1.60578 1.22911 1.15156 1.27263 1.22041 0.96618 0.87361 0.97933 1.19300 0.94713 0.91461 0.93990 1.20247 0.98226 1.43870 0.88237 0.90354 1.24904 0.96870 0.94800 0.95902 1.69886 1.36141 1.48417 0.99072 0.87062 0.85791 0.79262 0.78509 1.20778 1.21872 1.17609 1.23108 0.99493 0.94691 1.05894 1.22724 0.99080 1.04894 0.95115 1.25075 0.79016 0.78037 0.88859 1.90738 1.68180 1.32113 1.47799 1.84723 1.39021 1.61899 1.47153 0.90171 0.90045 0.89733 0.79937 0.82089 0.82069 0.96559 0.90736 0.92677 0.91576 0.89429 0.89568 0.91009 0.73743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.06 9.44 59.85 0.56 1.63 16 2 N -0.37 -5.09 4.01 -63.88 -0.26 -5.35 16 3 N -0.30 -4.48 12.58 30.63 0.39 -4.10 16 4 C 0.04 0.54 12.03 -17.36 -0.21 0.33 16 5 C -0.22 -3.43 10.10 -40.01 -0.40 -3.84 16 6 C 0.08 1.21 6.18 -82.26 -0.51 0.70 16 7 C 0.16 2.42 2.50 -70.02 -0.18 2.25 16 8 H 0.13 1.74 7.79 -51.93 -0.40 1.34 16 9 N -0.63 -11.12 5.32 -109.19 -0.58 -11.70 16 10 C 0.09 1.79 4.57 -3.83 -0.02 1.77 16 11 C 0.01 0.15 1.04 -155.67 -0.16 -0.01 16 12 C -0.47 -12.69 9.41 -34.44 -0.32 -13.01 16 13 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 14 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 15 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 16 Si 0.87 20.76 24.86 -169.99 -4.23 16.54 16 17 H -0.28 -6.54 7.01 56.52 0.40 -6.14 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.25 -5.72 5.96 56.52 0.34 -5.38 16 20 C -0.19 -4.06 8.36 -26.73 -0.22 -4.28 16 21 C -0.18 -3.62 9.41 -26.73 -0.25 -3.88 16 22 C 0.45 6.04 7.50 36.00 0.27 6.31 16 23 O -0.50 -8.11 16.27 -18.75 -0.30 -8.42 16 24 O -0.52 -4.71 9.27 -39.25 -0.36 -5.08 16 25 H 0.08 0.68 6.82 -51.93 -0.35 0.32 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.73 7.24 -51.93 -0.38 0.36 16 28 H 0.18 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.16 2.54 7.78 -52.49 -0.41 2.13 16 30 H 0.36 6.28 6.57 -39.30 -0.26 6.02 16 31 H 0.02 0.31 7.63 -51.93 -0.40 -0.08 16 32 H 0.07 1.61 5.22 -51.93 -0.27 1.34 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 35 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 36 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.32 7.61 -51.93 -0.40 0.93 16 38 H 0.40 2.07 9.10 45.56 0.41 2.48 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -32.82 314.98 -5.55 -38.37 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -4.19 Total: 11.06 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -1.54 Total: -9.98 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.32 Total: -47.24 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.67 Total: -13.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.23 Total: 16.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.82 -5.55 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594594379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.038 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds