Wall clock time and date at job start Tue Mar 31 2020 01:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40090 * 126.04001 * 2 1 4 4 C 1.30834 * 108.20563 * 179.97438 * 3 2 1 5 5 C 1.39874 * 108.20368 * 359.77783 * 4 3 2 6 6 C 1.34946 * 126.03582 * 179.97438 * 2 1 3 7 7 C 1.50702 * 126.12648 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.46527 * 58.18671 * 7 6 2 9 9 N 1.46899 * 109.47249 * 178.18326 * 7 6 2 10 10 C 1.46903 * 111.00350 * 207.43599 * 9 7 6 11 11 C 1.52991 * 109.47326 * 181.90339 * 10 9 7 12 12 C 1.50699 * 115.55255 * 273.13541 * 11 10 9 13 13 H 1.08000 * 120.00008 * 115.99483 * 12 11 10 14 14 C 1.37881 * 119.99969 * 296.00426 * 12 11 10 15 15 N 1.31512 * 119.99921 * 177.72586 * 14 12 11 16 16 Si 1.86799 * 120.00049 * 357.72357 * 14 12 11 17 17 H 1.48495 * 109.47245 * 92.12906 * 16 14 12 18 18 H 1.48499 * 109.47452 * 212.13377 * 16 14 12 19 19 H 1.48508 * 109.46926 * 332.13208 * 16 14 12 20 20 C 1.53000 * 117.50058 * 127.42868 * 11 10 9 21 21 C 1.52998 * 117.50022 * 58.80455 * 11 10 9 22 22 C 1.50693 * 109.47389 * 298.18518 * 7 6 2 23 23 O 1.20822 * 120.00145 * 240.00020 * 22 7 6 24 24 O 1.34227 * 119.99946 * 59.72281 * 22 7 6 25 25 H 1.09003 * 109.47107 * 270.02786 * 1 2 3 26 26 H 1.09007 * 109.46907 * 30.01798 * 1 2 3 27 27 H 1.08994 * 109.47608 * 150.02324 * 1 2 3 28 28 H 1.08001 * 125.90063 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.04044 * 180.23502 * 5 4 3 30 30 H 1.00894 * 111.00013 * 83.47802 * 9 7 6 31 31 H 1.08999 * 109.46670 * 301.90324 * 10 9 7 32 32 H 1.09003 * 109.47097 * 61.90239 * 10 9 7 33 33 H 0.97004 * 119.99802 * 179.97438 * 15 14 12 34 34 H 1.09004 * 117.49430 * 359.97438 * 20 11 10 35 35 H 1.08994 * 117.50410 * 145.02140 * 20 11 10 36 36 H 1.09003 * 117.50312 * 214.97672 * 21 11 10 37 37 H 1.09004 * 117.50016 * 359.97438 * 21 11 10 38 38 H 0.96703 * 117.00349 * 180.27285 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0017 8 1 1.1699 -2.7063 -0.8713 9 7 2.9649 -3.4160 -0.0420 10 6 2.6266 -4.6976 -0.6754 11 6 3.8520 -5.6134 -0.6599 12 6 4.7963 -5.4555 -1.8237 13 1 5.8056 -5.1091 -1.6570 14 6 4.3717 -5.7531 -3.1013 15 7 5.1813 -5.5728 -4.1219 16 14 2.6467 -6.4123 -3.3824 17 1 1.7230 -5.2819 -3.6544 18 1 2.6533 -7.3368 -4.5445 19 1 2.1924 -7.1424 -2.1716 20 6 3.6777 -7.0170 -0.0766 21 6 4.4600 -5.9570 0.7014 22 6 1.0050 -2.7976 1.2544 23 8 1.3752 -3.6458 2.0312 24 8 -0.1088 -2.0935 1.5101 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5134 28 1 4.4055 1.3709 0.0011 29 1 4.4210 -1.2964 0.0114 30 1 3.3458 -3.5585 0.8814 31 1 1.8126 -5.1705 -0.1262 32 1 2.3166 -4.5230 -1.7058 33 1 4.8826 -5.7825 -5.0207 34 1 2.6899 -7.2878 0.2965 35 1 4.2458 -7.8266 -0.5346 36 1 5.5429 -6.0693 0.7552 37 1 3.9871 -5.5303 1.5860 38 1 -0.5812 -2.3008 2.3280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594594379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:58 Heat of formation + Delta-G solvation = 3.795100 kcal Electronic energy + Delta-G solvation = -22457.114424 eV Core-core repulsion = 19108.808829 eV Total energy + Delta-G solvation = -3348.305596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.46718 -41.27045 -39.16838 -37.41105 -36.20226 -34.20209 -34.07729 -31.71204 -28.82884 -27.86452 -27.44894 -25.65441 -23.32380 -22.89617 -21.90083 -20.97963 -20.59855 -19.32001 -18.75475 -18.46146 -17.68395 -16.94358 -16.50204 -16.15367 -15.79762 -15.68157 -15.12171 -15.03650 -14.82334 -14.53980 -14.45119 -14.02635 -13.55891 -13.48291 -13.15717 -13.02268 -12.89842 -12.63477 -12.44041 -12.17732 -12.03016 -12.00949 -11.69407 -11.39462 -10.91969 -10.59872 -10.34353 -10.22813 -9.62353 -9.42677 -8.20747 -6.24138 0.69897 0.99585 1.33778 1.42083 1.53948 1.59647 1.78565 2.05337 2.41903 2.80447 3.09727 3.37323 3.46448 3.76514 3.83947 4.07931 4.17206 4.33202 4.42568 4.44333 4.49562 4.53406 4.67207 4.80749 4.83814 4.84906 4.91680 5.12344 5.28439 5.37349 5.40255 5.52405 5.75747 5.78410 5.82125 6.07281 6.21166 6.42031 6.72034 6.80360 6.80766 7.41307 8.95363 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.006073 C = 0.005524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.657649 B = 4609.235062 C = 5067.367044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 N -0.317 5.317 4 C 0.038 3.962 5 C -0.249 4.249 6 C 0.077 3.923 7 C 0.163 3.837 8 H 0.136 0.864 9 N -0.640 5.640 10 C 0.101 3.899 11 C -0.017 4.017 12 C -0.467 4.467 13 H 0.029 0.971 14 C 0.019 3.981 15 N -0.951 5.951 16 Si 0.928 3.072 17 H -0.267 1.267 18 H -0.299 1.299 19 H -0.227 1.227 20 C -0.186 4.186 21 C -0.165 4.165 22 C 0.466 3.534 23 O -0.530 6.530 24 O -0.498 6.498 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.209 0.791 29 H 0.148 0.852 30 H 0.356 0.644 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.322 8.770 11.310 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 N -0.139 5.139 4 C -0.146 4.146 5 C -0.278 4.278 6 C -0.051 4.051 7 C 0.048 3.952 8 H 0.153 0.847 9 N -0.273 5.273 10 C -0.028 4.028 11 C -0.018 4.018 12 C -0.505 4.505 13 H 0.048 0.952 14 C -0.177 4.177 15 N -0.592 5.592 16 Si 0.753 3.247 17 H -0.193 1.193 18 H -0.227 1.227 19 H -0.149 1.149 20 C -0.224 4.224 21 C -0.202 4.202 22 C 0.305 3.695 23 O -0.419 6.419 24 O -0.311 6.311 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.226 0.774 29 H 0.166 0.834 30 H 0.179 0.821 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -14.705 9.902 10.431 20.569 hybrid contribution -0.288 -1.634 0.489 1.730 sum -14.993 8.268 10.920 20.307 Atomic orbital electron populations 1.22220 0.72089 1.04853 1.05049 1.48708 1.07692 1.02145 1.56347 1.77273 1.02499 1.08381 1.25791 1.24284 0.95773 0.95078 0.99501 1.21466 0.97032 0.95139 1.14176 1.20295 0.92063 0.88321 1.04466 1.19665 0.91332 0.89618 0.94614 0.84714 1.60403 1.25023 1.14487 1.27396 1.21728 0.95511 0.87936 0.97606 1.19207 0.95600 0.93554 0.93474 1.20383 0.97207 1.42626 0.90278 0.95229 1.25737 1.01263 0.95252 0.95468 1.70054 1.38683 1.50808 0.99630 0.86062 0.80754 0.79005 0.78917 1.19276 1.22661 1.14895 1.23123 1.00708 0.93434 1.05164 1.22719 0.98823 1.03898 0.94756 1.24451 0.79589 0.77655 0.87778 1.90738 1.69178 1.33531 1.48497 1.84634 1.37444 1.60479 1.48538 0.88485 0.88891 0.88377 0.77419 0.83418 0.82105 0.94780 0.92255 0.92819 0.89048 0.90437 0.90418 0.88691 0.71023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 9.44 127.77 1.21 2.80 16 2 N -0.37 -9.33 4.01 -356.02 -1.43 -10.76 16 3 N -0.32 -9.04 12.58 -57.02 -0.72 -9.76 16 4 C 0.04 1.03 12.03 85.24 1.03 2.05 16 5 C -0.25 -7.61 10.10 21.99 0.22 -7.39 16 6 C 0.08 2.21 6.18 41.41 0.26 2.46 16 7 C 0.16 4.48 2.50 43.42 0.11 4.59 16 8 H 0.14 3.42 7.79 -2.38 -0.02 3.40 16 9 N -0.64 -21.97 5.32 -499.37 -2.66 -24.63 16 10 C 0.10 3.86 4.57 86.30 0.39 4.25 16 11 C -0.02 -0.76 1.04 -52.93 -0.05 -0.81 16 12 C -0.47 -26.03 9.41 25.60 0.24 -25.79 16 13 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 14 C 0.02 1.11 5.45 84.66 0.46 1.57 16 15 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 16 Si 0.93 42.55 24.86 68.60 1.71 44.25 16 17 H -0.27 -11.56 7.01 99.48 0.70 -10.86 16 18 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 19 H -0.23 -9.33 5.96 99.48 0.59 -8.74 16 20 C -0.19 -7.37 8.36 30.59 0.26 -7.11 16 21 C -0.16 -6.37 9.41 30.59 0.29 -6.08 16 22 C 0.47 10.99 7.50 71.23 0.53 11.52 16 23 O -0.53 -15.56 16.27 21.98 0.36 -15.20 16 24 O -0.50 -7.02 9.27 -51.39 -0.48 -7.49 16 25 H 0.10 1.26 6.82 -2.39 -0.02 1.24 16 26 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.10 1.34 7.24 -2.39 -0.02 1.33 16 28 H 0.21 4.19 8.06 -2.91 -0.02 4.17 16 29 H 0.15 4.83 7.78 -2.91 -0.02 4.81 16 30 H 0.36 12.14 6.57 -89.70 -0.59 11.55 16 31 H 0.03 1.19 7.63 -2.39 -0.02 1.17 16 32 H 0.06 2.45 5.22 -2.39 -0.01 2.43 16 33 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.09 3.19 8.04 -2.39 -0.02 3.17 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.09 3.25 7.61 -2.38 -0.02 3.24 16 38 H 0.43 2.39 9.10 -74.06 -0.67 1.72 16 Total: -1.00 -72.70 314.98 1.73 -70.97 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.28 Total: 29.41 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.94 Total: -17.94 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.50 Total: -104.00 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.12 Total: -22.69 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.71 Total: 44.25 kcal Total: -72.70 1.73 -70.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594594379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.762 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds