Wall clock time and date at job start Tue Mar 31 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47237 * 2 1 4 4 C 1.34383 * 117.00110 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99810 * 179.97438 * 4 3 2 6 6 C 1.43204 * 119.99818 * 179.97438 * 5 4 3 7 7 N 5.80622 * 147.24826 * 359.97438 * 2 1 3 8 8 C 1.47016 * 120.00290 * 0.02562 * 5 4 3 9 9 O 1.21662 * 119.99484 * 296.81193 * 8 5 4 10 10 N 1.34765 * 120.00138 * 116.81436 * 8 5 4 11 11 C 1.46965 * 120.59686 * 4.63022 * 10 8 5 12 12 C 1.53370 * 108.63595 * 235.24717 * 11 10 8 13 13 N 1.46967 * 108.63716 * 310.57647 * 12 11 10 14 14 C 1.36931 * 120.59395 * 235.20120 * 13 12 11 15 15 H 1.08001 * 120.00209 * 152.54601 * 14 13 12 16 16 C 1.38810 * 120.00072 * 332.27099 * 14 13 12 17 17 N 1.31622 * 120.00043 * 342.19737 * 16 14 13 18 18 Si 1.86807 * 119.99912 * 162.19685 * 16 14 13 19 19 H 1.48494 * 109.47057 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47149 * 120.00181 * 18 16 14 21 21 H 1.48501 * 109.46773 * 239.99864 * 18 16 14 22 22 C 1.46966 * 118.80861 * 55.47820 * 13 12 11 23 23 C 1.46967 * 120.59257 * 184.65447 * 10 8 5 24 24 H 1.08997 * 109.47328 * 59.99754 * 1 2 3 25 25 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 300.00085 * 1 2 3 27 27 H 1.08996 * 109.46693 * 239.99941 * 2 1 3 28 28 H 1.09000 * 109.46707 * 119.99863 * 2 1 3 29 29 H 1.07994 * 120.00154 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.60929 * 115.50631 * 11 10 8 31 31 H 1.08997 * 109.74984 * 355.08037 * 11 10 8 32 32 H 1.08997 * 109.61076 * 190.83018 * 12 11 10 33 33 H 1.09004 * 109.75166 * 70.40241 * 12 11 10 34 34 H 0.96999 * 119.99694 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.61312 * 64.26738 * 22 13 12 36 36 H 1.09005 * 109.60488 * 184.77608 * 22 13 12 37 37 H 1.09001 * 109.60856 * 244.49296 * 23 10 8 38 38 H 1.08997 * 109.60951 * 4.83239 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3463 1.5450 -0.0005 5 6 3.8673 2.8047 -0.0011 6 6 5.2870 2.9924 -0.0011 7 7 6.4132 3.1412 -0.0014 8 6 2.9717 3.9707 -0.0005 9 8 2.2236 4.1634 -0.9404 10 7 2.9796 4.8259 1.0409 11 6 3.9474 4.6635 2.1350 12 6 3.1793 4.5743 3.4595 13 7 2.2199 5.6858 3.5218 14 6 2.2272 6.5543 4.5805 15 1 1.8775 7.5677 4.4501 16 6 2.6788 6.1304 5.8228 17 7 2.7666 4.8441 6.0873 18 14 3.1619 7.3857 7.1191 19 1 2.9724 8.7551 6.5769 20 1 2.3097 7.2079 8.3222 21 1 4.5870 7.1919 7.4889 22 6 1.2484 5.8449 2.4305 23 6 2.0202 5.9375 1.1032 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0041 0.6886 -0.0005 30 1 4.6196 5.5211 2.1590 31 1 4.5239 3.7508 1.9842 32 1 3.8778 4.6468 4.2930 33 1 2.6444 3.6260 3.5120 34 1 3.0825 4.5479 6.9553 35 1 0.5790 4.9850 2.4084 36 1 0.6715 6.7569 2.5844 37 1 2.5553 6.8858 1.0539 38 1 1.3235 5.8666 0.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618024150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:31 Heat of formation + Delta-G solvation = 6.809802 kcal Electronic energy + Delta-G solvation = -22073.543548 eV Core-core repulsion = 18725.368680 eV Total energy + Delta-G solvation = -3348.174868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03592 -38.91504 -36.75126 -36.51471 -33.79667 -33.04937 -31.50271 -30.75136 -30.04767 -26.97159 -24.37128 -23.67395 -23.19084 -22.52994 -21.08708 -19.32018 -18.08842 -17.41722 -16.74340 -16.27679 -15.87664 -15.69004 -14.79349 -14.49947 -13.88197 -13.73026 -13.48693 -13.38996 -13.30138 -13.17568 -13.03913 -12.99438 -12.67935 -12.41364 -12.11562 -11.74733 -11.57268 -11.32736 -11.28234 -10.84034 -10.71801 -10.47985 -10.21507 -9.99691 -9.83735 -9.47967 -8.69718 -8.57844 -8.19660 -6.70845 -5.85185 -3.28465 1.07526 2.45738 2.72411 3.09323 3.32106 3.34675 3.42966 3.45136 3.65910 4.24568 4.38141 4.45972 4.63020 4.68238 4.90943 5.14209 5.29686 5.36171 5.39756 5.56679 5.74735 5.82713 5.88135 5.90994 5.98208 6.17840 6.24260 6.37923 6.47135 6.79534 6.87810 6.96356 7.23276 7.47658 7.56247 7.73423 7.92995 8.36184 8.56973 9.12691 9.75657 10.32431 11.22470 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.005055 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.543426 B = 5537.282488 C = 5905.767137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.052 3.948 3 O -0.294 6.294 4 C 0.183 3.817 5 C -0.189 4.189 6 C 0.275 3.725 7 N -0.422 5.422 8 C 0.579 3.421 9 O -0.543 6.543 10 N -0.588 5.588 11 C 0.083 3.917 12 C 0.159 3.841 13 N -0.591 5.591 14 C -0.253 4.253 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.288 1.288 22 C 0.133 3.867 23 C 0.096 3.904 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.024 0.976 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -10.753 -10.710 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.022 4.022 3 O -0.203 6.203 4 C 0.110 3.890 5 C -0.197 4.197 6 C -0.039 4.039 7 N -0.101 5.101 8 C 0.365 3.635 9 O -0.421 6.421 10 N -0.319 5.319 11 C -0.041 4.041 12 C 0.033 3.967 13 N -0.314 5.314 14 C -0.382 4.382 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.215 1.215 22 C 0.006 3.994 23 C -0.027 4.027 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.598 -10.324 -11.019 15.112 hybrid contribution 0.073 0.242 0.909 0.943 sum -0.525 -10.083 -10.110 14.288 Atomic orbital electron populations 1.21787 0.92182 1.02959 1.04383 1.23480 0.96994 0.79572 1.02115 1.86322 1.19072 1.30691 1.84187 1.22965 0.84463 0.95603 0.86016 1.16699 0.85702 0.94083 1.23256 1.24771 0.91412 0.94591 0.93080 1.81263 1.11412 1.06447 1.10976 1.17418 0.82256 0.81473 0.82362 1.90757 1.42356 1.74210 1.34811 1.48007 1.34607 1.28415 1.20905 1.22656 0.91527 1.00558 0.89346 1.21162 0.92663 0.90066 0.92835 1.44022 1.33711 1.32451 1.21230 1.19263 1.40085 0.91650 0.87229 0.91355 1.25046 1.02015 0.95744 0.96800 1.70029 1.49743 1.12765 1.22172 0.86220 0.78052 0.81027 0.81463 1.20178 1.21716 1.21506 1.21388 0.91409 0.99531 0.87116 1.22323 0.92071 0.88049 1.00294 0.91114 0.90114 0.90923 0.91080 0.90884 0.83646 0.91877 0.91430 0.88220 0.95756 0.93597 0.95675 0.91465 0.91863 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.05 0.38 6.84 37.16 0.25 0.64 16 3 O -0.29 -3.53 9.46 -14.98 -0.14 -3.67 16 4 C 0.18 2.03 10.13 30.04 0.30 2.34 16 5 C -0.19 -2.79 4.53 -105.10 -0.48 -3.26 16 6 C 0.28 4.18 13.30 -22.47 -0.30 3.88 16 7 N -0.42 -6.98 18.54 41.84 0.78 -6.20 16 8 C 0.58 10.61 6.58 -12.71 -0.08 10.53 16 9 O -0.54 -11.14 16.44 5.22 0.09 -11.05 16 10 N -0.59 -11.20 2.95 -173.64 -0.51 -11.71 16 11 C 0.08 1.61 6.20 -3.60 -0.02 1.59 16 12 C 0.16 3.67 5.52 -3.60 -0.02 3.65 16 13 N -0.59 -14.45 2.96 -171.77 -0.51 -14.96 16 14 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 15 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 16 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 17 N -0.90 -25.32 11.18 55.49 0.62 -24.70 16 18 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.77 6.70 -3.37 -0.02 2.74 16 23 C 0.10 1.81 6.60 -3.36 -0.02 1.79 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.15 0.94 8.00 -52.49 -0.42 0.52 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.18 5.09 -51.93 -0.26 0.92 16 32 H 0.10 2.55 5.96 -51.93 -0.31 2.24 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 1.51 7.01 -51.93 -0.36 1.15 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -32.94 327.09 -5.14 -38.08 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.12 Total: -3.12 kcal Atomic # 6 Polarization: 16.49 SS G_CDS: -0.23 Total: 16.25 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.38 Total: -57.57 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.06 Total: -14.72 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.94 -5.14 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618024150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds