Wall clock time and date at job start Tue Mar 31 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45196 * 109.47237 * 2 1 4 4 C 1.34383 * 117.00110 * 180.02562 * 3 2 1 5 5 C 1.36326 * 119.99810 * 179.97438 * 4 3 2 6 6 C 1.43204 * 119.99818 * 179.97438 * 5 4 3 7 7 N 5.80622 * 147.24826 * 359.97438 * 2 1 3 8 8 C 1.47016 * 120.00290 * 0.02562 * 5 4 3 9 9 O 1.21662 * 119.99484 * 296.81193 * 8 5 4 10 10 N 1.34765 * 120.00138 * 116.81436 * 8 5 4 11 11 C 1.46965 * 120.59686 * 4.63022 * 10 8 5 12 12 C 1.53370 * 108.63595 * 235.24717 * 11 10 8 13 13 N 1.46967 * 108.63716 * 310.57647 * 12 11 10 14 14 C 1.36931 * 120.59395 * 235.20120 * 13 12 11 15 15 H 1.08001 * 120.00209 * 152.54601 * 14 13 12 16 16 C 1.38810 * 120.00072 * 332.27099 * 14 13 12 17 17 N 1.31622 * 120.00043 * 342.19737 * 16 14 13 18 18 Si 1.86807 * 119.99912 * 162.19685 * 16 14 13 19 19 H 1.48494 * 109.47057 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47149 * 120.00181 * 18 16 14 21 21 H 1.48501 * 109.46773 * 239.99864 * 18 16 14 22 22 C 1.46966 * 118.80861 * 55.47820 * 13 12 11 23 23 C 1.46967 * 120.59257 * 184.65447 * 10 8 5 24 24 H 1.08997 * 109.47328 * 59.99754 * 1 2 3 25 25 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 300.00085 * 1 2 3 27 27 H 1.08996 * 109.46693 * 239.99941 * 2 1 3 28 28 H 1.09000 * 109.46707 * 119.99863 * 2 1 3 29 29 H 1.07994 * 120.00154 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.60929 * 115.50631 * 11 10 8 31 31 H 1.08997 * 109.74984 * 355.08037 * 11 10 8 32 32 H 1.08997 * 109.61076 * 190.83018 * 12 11 10 33 33 H 1.09004 * 109.75166 * 70.40241 * 12 11 10 34 34 H 0.96999 * 119.99694 * 179.97438 * 17 16 14 35 35 H 1.08993 * 109.61312 * 64.26738 * 22 13 12 36 36 H 1.09005 * 109.60488 * 184.77608 * 22 13 12 37 37 H 1.09001 * 109.60856 * 244.49296 * 23 10 8 38 38 H 1.08997 * 109.60951 * 4.83239 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3463 1.5450 -0.0005 5 6 3.8673 2.8047 -0.0011 6 6 5.2870 2.9924 -0.0011 7 7 6.4132 3.1412 -0.0014 8 6 2.9717 3.9707 -0.0005 9 8 2.2236 4.1634 -0.9404 10 7 2.9796 4.8259 1.0409 11 6 3.9474 4.6635 2.1350 12 6 3.1793 4.5743 3.4595 13 7 2.2199 5.6858 3.5218 14 6 2.2272 6.5543 4.5805 15 1 1.8775 7.5677 4.4501 16 6 2.6788 6.1304 5.8228 17 7 2.7666 4.8441 6.0873 18 14 3.1619 7.3857 7.1191 19 1 2.9724 8.7551 6.5769 20 1 2.3097 7.2079 8.3222 21 1 4.5870 7.1919 7.4889 22 6 1.2484 5.8449 2.4305 23 6 2.0202 5.9375 1.1032 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.0041 0.6886 -0.0005 30 1 4.6196 5.5211 2.1590 31 1 4.5239 3.7508 1.9842 32 1 3.8778 4.6468 4.2930 33 1 2.6444 3.6260 3.5120 34 1 3.0825 4.5479 6.9553 35 1 0.5790 4.9850 2.4084 36 1 0.6715 6.7569 2.5844 37 1 2.5553 6.8858 1.0539 38 1 1.3235 5.8666 0.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618024150.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:31 Heat of formation + Delta-G solvation = -14.966854 kcal Electronic energy + Delta-G solvation = -22074.487855 eV Core-core repulsion = 18725.368680 eV Total energy + Delta-G solvation = -3349.119175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31321 -40.01179 -38.37172 -37.73162 -35.55495 -34.02612 -33.09480 -32.00363 -31.53063 -28.72766 -25.87381 -24.96676 -24.29544 -23.86429 -22.54645 -20.83591 -19.57493 -18.46533 -18.12985 -17.45731 -17.13530 -16.91295 -16.61275 -15.99945 -15.48226 -15.28086 -15.20509 -14.95026 -14.66718 -14.25858 -14.09805 -13.88920 -13.72167 -13.55558 -13.32394 -13.24186 -13.15827 -12.69156 -12.49411 -12.39809 -12.21949 -12.01624 -11.88433 -11.87640 -11.65206 -10.95058 -10.58947 -9.87186 -9.65547 -8.65559 -7.87993 -5.34730 0.12090 1.37889 1.47758 1.51165 1.55226 1.60766 1.95316 2.09593 2.40795 2.53157 3.26753 3.29437 3.45705 3.59881 3.92310 4.14093 4.16383 4.22925 4.24830 4.39980 4.44001 4.53570 4.64893 4.72130 4.76481 4.83722 4.89332 4.99016 5.08547 5.23990 5.30010 5.51130 5.61259 5.66316 6.08545 6.36263 6.43857 6.47578 7.11417 7.14013 7.79542 8.33099 9.17467 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.005055 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.543426 B = 5537.282488 C = 5905.767137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.044 3.956 3 O -0.324 6.324 4 C 0.232 3.768 5 C -0.241 4.241 6 C 0.297 3.703 7 N -0.457 5.457 8 C 0.581 3.419 9 O -0.570 6.570 10 N -0.597 5.597 11 C 0.103 3.897 12 C 0.169 3.831 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.070 0.930 16 C -0.045 4.045 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.135 3.865 23 C 0.105 3.895 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.202 0.798 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.007 0.993 34 H 0.252 0.748 35 H 0.016 0.984 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.561 -12.129 -11.449 16.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.029 4.029 3 O -0.232 6.232 4 C 0.157 3.843 5 C -0.250 4.250 6 C -0.016 4.016 7 N -0.136 5.136 8 C 0.369 3.631 9 O -0.450 6.450 10 N -0.328 5.328 11 C -0.022 4.022 12 C 0.042 3.958 13 N -0.332 5.332 14 C -0.393 4.393 15 H 0.087 0.913 16 C -0.241 4.241 17 N -0.577 5.577 18 Si 0.794 3.206 19 H -0.193 1.193 20 H -0.220 1.220 21 H -0.217 1.217 22 C 0.008 3.992 23 C -0.019 4.019 24 H 0.077 0.923 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.219 0.781 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.025 0.975 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.439 -11.708 -11.784 16.617 hybrid contribution -0.185 0.528 1.084 1.220 sum -0.624 -11.179 -10.700 15.487 Atomic orbital electron populations 1.21855 0.92678 1.04319 1.02727 1.23903 0.96685 0.77434 1.04877 1.86300 1.19893 1.34299 1.82724 1.23630 0.84782 0.95873 0.79984 1.16422 0.84944 0.94067 1.29580 1.24664 0.91169 0.93807 0.91918 1.81288 1.12201 1.07159 1.12983 1.17895 0.82148 0.81723 0.81313 1.90727 1.43859 1.74867 1.35531 1.48090 1.34628 1.28891 1.21212 1.22327 0.90951 1.01379 0.87499 1.20943 0.91975 0.88939 0.93901 1.44268 1.34921 1.32412 1.21571 1.19556 1.39669 0.92134 0.87990 0.91253 1.25738 1.02396 0.97291 0.98634 1.70157 1.50778 1.14311 1.22475 0.85244 0.77224 0.79309 0.78860 1.19256 1.21961 1.21655 1.21445 0.91070 0.99476 0.87168 1.22166 0.92164 0.88515 0.99071 0.92254 0.87255 0.93093 0.87789 0.88588 0.78113 0.92425 0.89355 0.90918 0.97488 0.93910 0.96583 0.90649 0.91456 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.29 71.98 0.74 -1.23 16 2 C 0.04 0.47 6.84 71.98 0.49 0.96 16 3 O -0.32 -6.89 9.46 -76.51 -0.72 -7.61 16 4 C 0.23 4.34 10.13 67.37 0.68 5.02 16 5 C -0.24 -6.67 4.53 -20.18 -0.09 -6.76 16 6 C 0.30 8.56 13.30 88.33 1.17 9.73 16 7 N -0.46 -14.60 18.54 19.00 0.35 -14.25 16 8 C 0.58 20.83 6.58 86.55 0.57 21.40 16 9 O -0.57 -23.05 16.44 -4.23 -0.07 -23.12 16 10 N -0.60 -22.52 2.95 -821.50 -2.42 -24.94 16 11 C 0.10 3.96 6.20 86.41 0.54 4.50 16 12 C 0.17 7.91 5.52 86.41 0.48 8.39 16 13 N -0.61 -30.05 2.96 -697.34 -2.07 -32.11 16 14 C -0.26 -14.12 9.58 84.03 0.80 -13.31 16 15 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 16 C -0.04 -2.43 4.90 84.86 0.42 -2.01 16 17 N -0.93 -53.08 11.18 21.65 0.24 -52.83 16 18 Si 0.97 43.80 29.59 68.60 2.03 45.83 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 C 0.13 5.64 6.70 86.56 0.58 6.22 16 23 C 0.10 3.91 6.60 86.56 0.57 4.48 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.20 1.45 8.00 -2.91 -0.02 1.43 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 3.03 5.09 -2.39 -0.01 3.02 16 32 H 0.07 3.81 5.96 -2.39 -0.01 3.79 16 33 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 2.98 7.93 -2.38 -0.02 2.96 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.09 3.28 7.01 -2.39 -0.02 3.26 16 Total: -1.00 -72.63 327.09 5.36 -67.26 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.07 Total: 4.37 kcal Atomic # 6 Polarization: 30.44 SS G_CDS: 6.95 Total: 37.40 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -3.89 Total: -124.14 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.79 Total: -30.73 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.63 5.36 -67.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618024150.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.295 kcal (2) G-P(sol) polarization free energy of solvation -72.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds