Wall clock time and date at job start Tue Mar 31 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34943 * 126.03365 * 2 1 4 4 C 1.35312 * 107.74607 * 180.24373 * 3 2 1 5 5 C 1.50705 * 126.04484 * 179.76909 * 4 3 2 6 6 H 1.09003 * 109.47264 * 25.02964 * 5 4 3 7 7 C 1.53086 * 109.48244 * 265.00543 * 5 4 3 8 8 C 1.53179 * 109.16538 * 182.40342 * 7 5 4 9 9 H 1.09001 * 109.54472 * 176.93420 * 8 7 5 10 10 N 1.46494 * 109.54202 * 297.11566 * 8 7 5 11 11 C 1.34779 * 119.99682 * 204.99452 * 10 8 7 12 12 O 1.21689 * 120.00385 * 0.02562 * 11 10 8 13 13 C 1.46374 * 120.00105 * 179.97438 * 11 10 8 14 14 H 1.08009 * 120.00046 * 353.94204 * 13 11 10 15 15 C 1.40045 * 120.00280 * 173.94067 * 13 11 10 16 16 N 1.30672 * 120.00131 * 6.15373 * 15 13 11 17 17 Si 1.86800 * 120.00279 * 186.15095 * 15 13 11 18 18 H 1.48493 * 109.47239 * 94.98340 * 17 15 13 19 19 H 1.48498 * 109.47334 * 214.98634 * 17 15 13 20 20 H 1.48509 * 109.46994 * 334.98401 * 17 15 13 21 21 C 1.53187 * 109.03243 * 56.97990 * 8 7 5 22 22 C 1.53092 * 109.16020 * 303.01861 * 21 8 7 23 23 O 1.42903 * 109.48089 * 145.05916 * 5 4 3 24 24 C 1.39871 * 107.91864 * 359.64483 * 4 3 2 25 25 N 1.30838 * 108.20318 * 0.35690 * 24 4 3 26 26 H 1.09000 * 109.46740 * 90.00421 * 1 2 3 27 27 H 1.09002 * 109.47041 * 209.99815 * 1 2 3 28 28 H 1.08998 * 109.47635 * 330.00372 * 1 2 3 29 29 H 1.08004 * 126.13235 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.52030 * 302.30812 * 7 5 4 31 31 H 1.09006 * 109.52511 * 62.43269 * 7 5 4 32 32 H 0.97000 * 120.00748 * 24.99990 * 10 8 7 33 33 H 0.96995 * 120.00630 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.52068 * 62.92786 * 21 8 7 35 35 H 1.08999 * 109.52021 * 183.05070 * 21 8 7 36 36 H 1.09006 * 109.47740 * 177.59561 * 22 21 8 37 37 H 1.09001 * 109.48310 * 297.61207 * 22 21 8 38 38 H 1.08008 * 125.89820 * 180.14760 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6667 -0.0055 5 6 4.7679 1.5454 -0.0124 6 1 4.5222 2.5143 0.4223 7 6 5.2492 1.7391 -1.4527 8 6 6.5275 2.5831 -1.4465 9 1 6.9059 2.6792 -2.4642 10 7 6.2346 3.9123 -0.9048 11 6 7.0071 4.9634 -1.2440 12 8 7.9476 4.8083 -2.0004 13 6 6.7141 6.2916 -0.7033 14 1 5.8240 6.4498 -0.1122 15 6 7.5878 7.3574 -0.9522 16 7 8.5988 7.1974 -1.7645 17 14 7.3080 9.0079 -0.1233 18 1 8.1288 9.0871 1.1116 19 1 7.7007 10.1000 -1.0497 20 1 5.8717 9.1486 0.2271 21 6 7.5776 1.8928 -0.5705 22 6 7.0063 1.6932 0.8357 23 8 5.8027 0.9271 0.7551 24 6 3.5346 -0.7320 -0.0007 25 7 2.2891 -1.1327 -0.0004 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.9280 2.1194 -0.0004 30 1 5.4563 0.7675 -1.9013 31 1 4.4775 2.2494 -2.0291 32 1 5.4847 4.0360 -0.3021 33 1 9.2038 7.9356 -1.9373 34 1 7.8317 0.9243 -1.0013 35 1 8.4720 2.5134 -0.5166 36 1 7.7334 1.1640 1.4518 37 1 6.7904 2.6641 1.2816 38 1 4.4055 -1.3709 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625107220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:07 Heat of formation + Delta-G solvation = -7.459004 kcal Electronic energy + Delta-G solvation = -21828.630651 eV Core-core repulsion = 18479.837040 eV Total energy + Delta-G solvation = -3348.793610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28721 -39.28554 -36.88932 -33.94566 -33.57482 -32.40209 -31.80569 -30.26911 -29.20478 -26.83708 -26.14724 -24.04326 -23.22237 -21.19372 -20.61591 -20.28568 -18.47272 -17.48487 -16.96736 -15.74882 -15.51939 -15.42309 -15.24001 -14.89349 -14.36845 -14.23947 -14.04062 -13.69223 -13.05613 -12.91990 -12.68286 -12.52319 -12.36539 -11.97174 -11.89669 -11.60593 -11.21909 -11.06708 -11.02272 -10.75110 -10.45640 -10.32918 -10.25105 -9.89604 -9.46277 -9.21916 -8.85611 -8.34128 -7.61787 -7.50992 -6.20272 -4.64768 1.81102 2.43104 2.76833 3.12560 3.20049 3.23046 4.00600 4.09540 4.49226 4.57532 4.79011 4.85724 4.90999 5.04278 5.14954 5.19557 5.29727 5.35503 5.43935 5.54014 5.63292 5.72930 5.85152 5.92509 5.98472 6.04382 6.25180 6.46085 6.49226 6.59273 6.65687 6.71042 6.89788 7.42470 7.52845 7.67849 7.91574 8.10315 8.32404 9.01878 9.52816 10.59163 10.78195 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.004089 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.087365 B = 6845.215718 C = 7520.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.062 3.938 4 C -0.224 4.224 5 C 0.173 3.827 6 H 0.062 0.938 7 C -0.146 4.146 8 C 0.153 3.847 9 H 0.079 0.921 10 N -0.761 5.761 11 C 0.556 3.444 12 O -0.580 6.580 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.089 3.911 16 N -0.767 5.767 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.163 4.163 22 C 0.067 3.933 23 O -0.380 6.380 24 C 0.074 3.926 25 N -0.306 5.306 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.377 0.623 33 H 0.268 0.732 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.004 -11.168 4.841 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.163 5.163 3 C -0.084 4.084 4 C -0.235 4.235 5 C 0.114 3.886 6 H 0.080 0.920 7 C -0.184 4.184 8 C 0.046 3.954 9 H 0.097 0.903 10 N -0.417 5.417 11 C 0.360 3.640 12 O -0.462 6.462 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.131 4.131 16 N -0.396 5.396 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.202 4.202 22 C -0.010 4.010 23 O -0.299 6.299 24 C -0.112 4.112 25 N -0.127 5.127 26 H 0.091 0.909 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.193 0.807 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.208 0.792 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.133 -12.384 4.255 18.546 hybrid contribution 0.101 1.918 0.550 1.998 sum -13.032 -10.466 4.804 17.391 Atomic orbital electron populations 1.21816 0.74343 1.04350 1.03254 1.48415 1.06525 1.03864 1.57473 1.22217 0.90587 0.93501 1.02127 1.19807 0.93344 0.94254 1.16142 1.19981 0.84347 0.93154 0.91117 0.92017 1.22439 0.98437 1.00753 0.96808 1.20515 0.92702 0.83875 0.98263 0.90252 1.46260 1.35269 1.06886 1.53275 1.18200 0.81355 0.83668 0.80776 1.90597 1.31468 1.85197 1.38983 1.20887 1.09703 0.92584 1.35272 0.91543 1.25685 0.94164 0.99745 0.93503 1.70020 1.11361 1.31550 1.26677 0.86397 0.79358 0.81694 0.79521 1.19825 1.20491 1.18941 1.22544 1.00549 1.00711 0.96444 1.22518 0.85699 0.95912 0.96835 1.87839 1.23232 1.46837 1.72037 1.23730 0.94803 0.94595 0.98050 1.77354 1.01792 1.08173 1.25417 0.90882 0.89448 0.89522 0.80746 0.90700 0.90879 0.79151 0.92149 0.91709 0.90203 0.89521 0.92632 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.47 59.85 0.69 1.36 16 2 N -0.38 -4.27 4.01 -68.16 -0.27 -4.54 16 3 C 0.06 0.69 11.40 -17.23 -0.20 0.50 16 4 C -0.22 -2.95 5.16 -105.05 -0.54 -3.49 16 5 C 0.17 2.44 2.91 -27.84 -0.08 2.36 16 6 H 0.06 0.87 6.71 -51.93 -0.35 0.52 16 7 C -0.15 -2.18 5.06 -26.59 -0.13 -2.31 16 8 C 0.15 2.85 2.82 -67.74 -0.19 2.66 16 9 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 10 N -0.76 -16.23 4.39 -55.03 -0.24 -16.47 16 11 C 0.56 15.30 7.71 -12.99 -0.10 15.20 16 12 O -0.58 -18.27 14.71 5.20 0.08 -18.19 16 13 C -0.55 -15.11 9.53 -35.63 -0.34 -15.45 16 14 H 0.07 1.68 7.86 -52.48 -0.41 1.27 16 15 C 0.09 2.44 5.49 -17.37 -0.10 2.34 16 16 N -0.77 -22.73 11.85 55.55 0.66 -22.07 16 17 Si 0.91 19.85 29.56 -169.99 -5.03 14.82 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 21 C -0.16 -2.83 5.81 -26.59 -0.15 -2.98 16 22 C 0.07 1.04 6.68 37.20 0.25 1.28 16 23 O -0.38 -5.80 10.12 -35.23 -0.36 -6.15 16 24 C 0.07 0.99 11.63 -17.36 -0.20 0.79 16 25 N -0.31 -4.17 12.58 30.63 0.39 -3.79 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.18 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.38 7.14 7.05 -40.82 -0.29 6.85 16 33 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.18 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -35.39 320.69 -6.25 -41.64 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.21 Total: 7.64 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.10 Total: 2.28 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.53 Total: -46.87 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.28 Total: -24.35 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.39 -6.25 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625107220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.178 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds