Wall clock time and date at job start Tue Mar 31 2020 01:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34943 * 126.03365 * 2 1 4 4 C 1.35312 * 107.74607 * 180.24373 * 3 2 1 5 5 C 1.50705 * 126.04484 * 179.76909 * 4 3 2 6 6 H 1.09003 * 109.47264 * 25.02964 * 5 4 3 7 7 C 1.53086 * 109.48244 * 265.00543 * 5 4 3 8 8 C 1.53179 * 109.16538 * 182.40342 * 7 5 4 9 9 H 1.09001 * 109.54472 * 176.93420 * 8 7 5 10 10 N 1.46494 * 109.54202 * 297.11566 * 8 7 5 11 11 C 1.34779 * 119.99682 * 204.99452 * 10 8 7 12 12 O 1.21689 * 120.00385 * 0.02562 * 11 10 8 13 13 C 1.46374 * 120.00105 * 179.97438 * 11 10 8 14 14 H 1.08009 * 120.00046 * 353.94204 * 13 11 10 15 15 C 1.40045 * 120.00280 * 173.94067 * 13 11 10 16 16 N 1.30672 * 120.00131 * 6.15373 * 15 13 11 17 17 Si 1.86800 * 120.00279 * 186.15095 * 15 13 11 18 18 H 1.48493 * 109.47239 * 94.98340 * 17 15 13 19 19 H 1.48498 * 109.47334 * 214.98634 * 17 15 13 20 20 H 1.48509 * 109.46994 * 334.98401 * 17 15 13 21 21 C 1.53187 * 109.03243 * 56.97990 * 8 7 5 22 22 C 1.53092 * 109.16020 * 303.01861 * 21 8 7 23 23 O 1.42903 * 109.48089 * 145.05916 * 5 4 3 24 24 C 1.39871 * 107.91864 * 359.64483 * 4 3 2 25 25 N 1.30838 * 108.20318 * 0.35690 * 24 4 3 26 26 H 1.09000 * 109.46740 * 90.00421 * 1 2 3 27 27 H 1.09002 * 109.47041 * 209.99815 * 1 2 3 28 28 H 1.08998 * 109.47635 * 330.00372 * 1 2 3 29 29 H 1.08004 * 126.13235 * 359.97438 * 3 2 1 30 30 H 1.09001 * 109.52030 * 302.30812 * 7 5 4 31 31 H 1.09006 * 109.52511 * 62.43269 * 7 5 4 32 32 H 0.97000 * 120.00748 * 24.99990 * 10 8 7 33 33 H 0.96995 * 120.00630 * 179.97438 * 16 15 13 34 34 H 1.08996 * 109.52068 * 62.92786 * 21 8 7 35 35 H 1.08999 * 109.52021 * 183.05070 * 21 8 7 36 36 H 1.09006 * 109.47740 * 177.59561 * 22 21 8 37 37 H 1.09001 * 109.48310 * 297.61207 * 22 21 8 38 38 H 1.08008 * 125.89820 * 180.14760 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0912 0.0000 4 6 3.5436 0.6667 -0.0055 5 6 4.7679 1.5454 -0.0124 6 1 4.5222 2.5143 0.4223 7 6 5.2492 1.7391 -1.4527 8 6 6.5275 2.5831 -1.4465 9 1 6.9059 2.6792 -2.4642 10 7 6.2346 3.9123 -0.9048 11 6 7.0071 4.9634 -1.2440 12 8 7.9476 4.8083 -2.0004 13 6 6.7141 6.2916 -0.7033 14 1 5.8240 6.4498 -0.1122 15 6 7.5878 7.3574 -0.9522 16 7 8.5988 7.1974 -1.7645 17 14 7.3080 9.0079 -0.1233 18 1 8.1288 9.0871 1.1116 19 1 7.7007 10.1000 -1.0497 20 1 5.8717 9.1486 0.2271 21 6 7.5776 1.8928 -0.5705 22 6 7.0063 1.6932 0.8357 23 8 5.8027 0.9271 0.7551 24 6 3.5346 -0.7320 -0.0007 25 7 2.2891 -1.1327 -0.0004 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.9280 2.1194 -0.0004 30 1 5.4563 0.7675 -1.9013 31 1 4.4775 2.2494 -2.0291 32 1 5.4847 4.0360 -0.3021 33 1 9.2038 7.9356 -1.9373 34 1 7.8317 0.9243 -1.0013 35 1 8.4720 2.5134 -0.5166 36 1 7.7334 1.1640 1.4518 37 1 6.7904 2.6641 1.2816 38 1 4.4055 -1.3709 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625107220.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:07 Heat of formation + Delta-G solvation = -33.470413 kcal Electronic energy + Delta-G solvation = -21829.758590 eV Core-core repulsion = 18479.837040 eV Total energy + Delta-G solvation = -3349.921550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.20824 -40.68872 -38.77002 -35.63500 -34.50083 -34.41611 -32.86896 -32.01315 -30.23614 -28.31402 -27.51315 -25.36558 -24.43441 -22.61174 -21.89646 -21.31147 -20.05966 -19.29998 -18.05057 -17.41951 -16.90515 -16.57863 -16.49590 -16.16733 -15.88963 -15.60591 -15.23882 -15.01573 -14.46280 -14.11165 -13.76709 -13.69574 -13.61668 -13.40544 -13.19378 -13.03287 -12.84087 -12.76808 -12.55852 -12.36937 -12.01747 -11.95757 -11.61093 -11.15157 -10.90800 -10.49087 -10.32558 -9.80379 -9.41921 -9.30193 -8.26668 -6.81401 0.94342 1.41944 1.42792 1.58343 1.70197 1.79022 2.26356 2.51314 2.87930 3.14074 3.62286 3.72889 3.91007 4.02089 4.05364 4.13362 4.15013 4.27966 4.39549 4.42534 4.48309 4.64722 4.72221 4.73599 4.88671 4.92479 4.95081 5.05486 5.16312 5.23708 5.26292 5.35520 5.68123 5.91961 6.13058 6.27406 6.33488 6.34364 6.74916 6.90692 7.59623 8.54092 8.71647 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.004089 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.087365 B = 6845.215718 C = 7520.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.379 5.379 3 C 0.073 3.927 4 C -0.248 4.248 5 C 0.179 3.821 6 H 0.064 0.936 7 C -0.131 4.131 8 C 0.149 3.851 9 H 0.045 0.955 10 N -0.745 5.745 11 C 0.542 3.458 12 O -0.631 6.631 13 C -0.574 4.574 14 H 0.087 0.913 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.994 3.006 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.247 1.247 21 C -0.158 4.158 22 C 0.076 3.924 23 O -0.380 6.380 24 C 0.064 3.936 25 N -0.335 5.335 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.115 0.885 29 H 0.207 0.793 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.391 0.609 33 H 0.273 0.727 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.109 0.891 37 H 0.044 0.956 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.483 -10.658 6.375 19.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.161 5.161 3 C -0.075 4.075 4 C -0.260 4.260 5 C 0.120 3.880 6 H 0.082 0.918 7 C -0.169 4.169 8 C 0.043 3.957 9 H 0.063 0.937 10 N -0.399 5.399 11 C 0.346 3.654 12 O -0.518 6.518 13 C -0.611 4.611 14 H 0.105 0.895 15 C -0.185 4.185 16 N -0.452 5.452 17 Si 0.814 3.186 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.170 1.170 21 C -0.197 4.197 22 C -0.001 4.001 23 O -0.299 6.299 24 C -0.122 4.122 25 N -0.157 5.157 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.133 0.867 29 H 0.224 0.776 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.062 0.938 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.681 -11.933 5.815 20.545 hybrid contribution 0.785 1.675 0.035 1.850 sum -14.896 -10.258 5.849 19.009 Atomic orbital electron populations 1.22209 0.71789 1.06028 1.04633 1.48805 1.07993 1.03220 1.56034 1.22700 0.89991 0.94804 0.99956 1.19755 0.93602 0.94025 1.18591 1.19933 0.84506 0.93623 0.89912 0.91805 1.22325 0.96269 1.00235 0.98102 1.20635 0.95219 0.83277 0.96543 0.93690 1.45873 1.34516 1.06863 1.52693 1.18542 0.81276 0.85251 0.80317 1.90556 1.33767 1.86252 1.41212 1.21429 1.10787 0.93153 1.35690 0.89486 1.26924 0.93315 1.04558 0.93666 1.70191 1.12858 1.33448 1.28692 0.85054 0.80181 0.75228 0.78120 1.18963 1.20007 1.17007 1.22459 0.98709 1.00634 0.97910 1.22437 0.86375 0.95892 0.95408 1.87864 1.23126 1.46815 1.72110 1.23880 0.95105 0.94978 0.98208 1.77301 1.02189 1.09709 1.26474 0.89615 0.89058 0.86659 0.77623 0.89708 0.90271 0.77462 0.91713 0.89831 0.93797 0.87339 0.93785 0.79472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.39 16 2 N -0.38 -7.50 4.01 -369.57 -1.48 -8.98 16 3 C 0.07 1.42 11.40 83.54 0.95 2.38 16 4 C -0.25 -6.01 5.16 -20.14 -0.10 -6.11 16 5 C 0.18 4.75 2.91 29.88 0.09 4.83 16 6 H 0.06 1.67 6.71 -2.39 -0.02 1.65 16 7 C -0.13 -3.77 5.06 30.68 0.16 -3.62 16 8 C 0.15 5.67 2.82 45.12 0.13 5.79 16 9 H 0.04 2.02 7.57 -2.39 -0.02 2.00 16 10 N -0.74 -32.10 4.39 -446.25 -1.96 -34.06 16 11 C 0.54 30.68 7.71 86.36 0.67 31.34 16 12 O -0.63 -41.68 14.71 -4.31 -0.06 -41.74 16 13 C -0.57 -31.82 9.53 24.83 0.24 -31.58 16 14 H 0.09 4.30 7.86 -2.91 -0.02 4.27 16 15 C 0.03 1.67 5.49 85.30 0.47 2.14 16 16 N -0.82 -50.03 11.85 21.83 0.26 -49.77 16 17 Si 0.99 40.33 29.56 68.60 2.03 42.35 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 21 C -0.16 -5.56 5.81 30.69 0.18 -5.38 16 22 C 0.08 2.27 6.68 72.01 0.48 2.75 16 23 O -0.38 -10.97 10.12 -148.98 -1.51 -12.48 16 24 C 0.06 1.61 11.63 85.24 0.99 2.60 16 25 N -0.33 -8.61 12.58 -57.02 -0.72 -9.33 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.21 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.39 14.54 7.05 -92.71 -0.65 13.88 16 33 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 37 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 38 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -79.46 320.69 2.68 -76.77 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.42 Total: 29.71 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.71 Total: 7.54 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -3.90 Total: -102.15 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -1.57 Total: -54.22 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.35 kcal Total: -79.46 2.68 -76.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625107220.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.304 kcal (2) G-P(sol) polarization free energy of solvation -79.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds