Wall clock time and date at job start Tue Mar 31 2020 00:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 C 1.37102 * 120.00251 * 264.78026 * 3 2 1 5 5 H 1.07993 * 120.00462 * 146.17967 * 4 3 2 6 6 C 1.38950 * 119.99643 * 326.17726 * 4 3 2 7 7 N 1.31420 * 120.00288 * 337.61432 * 6 4 3 8 8 Si 1.86796 * 119.99941 * 157.61470 * 6 4 3 9 9 H 1.48500 * 109.47419 * 59.99963 * 8 6 4 10 10 H 1.48503 * 109.47363 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46961 * 299.99940 * 8 6 4 12 12 C 1.34772 * 119.99959 * 84.77955 * 3 2 1 13 13 O 1.21294 * 120.00392 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99823 * 359.97438 * 12 3 2 15 15 N 1.46503 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.35868 * 119.93595 * 90.00623 * 15 14 12 17 17 C 1.50693 * 120.40578 * 0.02562 * 16 15 14 18 18 C 1.36026 * 119.19015 * 180.29575 * 16 15 14 19 19 C 1.39812 * 119.08057 * 359.46758 * 18 16 15 20 20 C 1.50704 * 120.08428 * 180.25153 * 19 18 16 21 21 N 1.31759 * 119.82725 * 0.53065 * 19 18 16 22 22 C 1.33515 * 120.81938 * 359.73867 * 21 19 18 23 23 O 1.21951 * 119.52320 * 180.02562 * 22 21 19 24 24 H 1.08995 * 109.47379 * 299.99492 * 1 2 3 25 25 H 1.08995 * 109.47464 * 59.99817 * 1 2 3 26 26 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46759 * 240.00246 * 2 1 3 28 28 H 1.08995 * 109.47464 * 120.00183 * 2 1 3 29 29 H 0.96992 * 120.00019 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46935 * 60.01074 * 14 12 3 31 31 H 1.08995 * 109.47587 * 300.00422 * 14 12 3 32 32 H 1.08998 * 109.47430 * 89.99907 * 17 16 15 33 33 H 1.09000 * 109.47500 * 210.00760 * 17 16 15 34 34 H 1.08999 * 109.47166 * 330.00318 * 17 16 15 35 35 H 1.08002 * 120.45997 * 179.69633 * 18 16 15 36 36 H 1.08997 * 109.47149 * 180.28314 * 20 19 18 37 37 H 1.09003 * 109.46771 * 300.28397 * 20 19 18 38 38 H 1.08998 * 109.47038 * 60.28202 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 1.9916 -1.1824 5 1 2.1810 3.0509 -1.3086 6 6 2.8992 1.2470 -2.2184 7 7 3.5049 0.1096 -1.9605 8 14 2.7785 1.8629 -3.9778 9 1 3.4507 3.1824 -4.0876 10 1 3.4399 0.8937 -4.8880 11 1 1.3493 2.0024 -4.3564 12 6 2.1427 2.0519 1.1623 13 8 2.5466 3.1956 1.1624 14 6 1.7791 1.3812 2.4619 15 7 2.0004 2.3127 3.5708 16 6 0.9974 3.1346 3.9764 17 6 -0.3450 3.0946 3.2928 18 6 1.2214 3.9978 5.0036 19 6 2.4754 4.0077 5.6217 20 6 2.7464 4.9509 6.7654 21 7 3.4213 3.1943 5.1980 22 6 3.1973 2.3530 4.1857 23 8 4.0896 1.6101 3.8130 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8896 -0.4098 -2.6836 30 1 2.4006 0.4966 2.6006 31 1 0.7296 1.0879 2.4383 32 1 -0.9862 2.3690 3.7932 33 1 -0.8064 4.0810 3.3401 34 1 -0.2133 2.8048 2.2503 35 1 0.4401 4.6636 5.3394 36 1 3.7715 4.8177 7.1111 37 1 2.6067 5.9785 6.4298 38 1 2.0569 4.7386 7.5825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626568094.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:35 Heat of formation + Delta-G solvation = -15.235872 kcal Electronic energy + Delta-G solvation = -22540.293691 eV Core-core repulsion = 19191.162850 eV Total energy + Delta-G solvation = -3349.130841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.57576 -38.64451 -37.00416 -35.95358 -34.96860 -32.24924 -31.97461 -30.39092 -29.62676 -28.55398 -26.91885 -24.68464 -22.81848 -22.46431 -21.72667 -19.40905 -18.21500 -17.20038 -16.74849 -16.41214 -15.79510 -15.40133 -14.96381 -14.27397 -14.25385 -13.82570 -13.62887 -13.54548 -13.43584 -13.17762 -12.99947 -12.76437 -12.46597 -12.16182 -12.02843 -11.89133 -11.45354 -11.22590 -11.12901 -11.06540 -10.55128 -10.46796 -10.41406 -10.38211 -10.21899 -9.32223 -9.04207 -8.69560 -8.07499 -7.62444 -6.41225 -4.03855 0.84790 1.89363 2.68455 3.13225 3.21354 3.24163 3.66164 4.00933 4.12268 4.23609 4.31342 4.68122 4.76767 4.90438 5.04499 5.20513 5.23745 5.27144 5.42686 5.43990 5.47533 5.59775 5.65442 5.75235 5.82086 5.92770 6.03047 6.06273 6.14348 6.34218 6.48519 6.73924 6.78106 7.14627 7.51674 8.09213 8.16583 8.37482 8.53079 9.05108 9.26781 9.82834 10.62314 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.005024 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.239736 B = 5571.970003 C = 5763.211153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.088 3.912 3 N -0.429 5.429 4 C -0.312 4.312 5 H 0.094 0.906 6 C 0.038 3.962 7 N -0.864 5.864 8 Si 0.922 3.078 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.443 3.557 13 O -0.571 6.571 14 C 0.072 3.928 15 N -0.487 5.487 16 C 0.233 3.767 17 C -0.133 4.133 18 C -0.309 4.309 19 C 0.265 3.735 20 C -0.113 4.113 21 N -0.556 5.556 22 C 0.636 3.364 23 O -0.528 6.528 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.271 0.729 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 3.051 11.572 17.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.036 4.036 3 N -0.148 5.148 4 C -0.440 4.440 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.501 5.501 8 Si 0.748 3.252 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.198 1.198 12 C 0.229 3.771 13 O -0.454 6.454 14 C -0.055 4.055 15 N -0.200 5.200 16 C 0.112 3.888 17 C -0.190 4.190 18 C -0.335 4.335 19 C 0.103 3.897 20 C -0.170 4.170 21 N -0.291 5.291 22 C 0.339 3.661 23 O -0.402 6.402 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.370 2.661 11.331 15.589 hybrid contribution -0.777 0.098 -1.299 1.517 sum -11.147 2.759 10.032 15.248 Atomic orbital electron populations 1.22214 0.97920 1.00693 1.01364 1.21708 0.91857 0.85358 1.04683 1.43482 1.55036 1.11766 1.04491 1.19421 1.40698 0.95571 0.88270 0.88866 1.25379 0.94157 0.96466 1.00716 1.69922 1.31720 1.15196 1.33245 0.86081 0.78638 0.78868 0.81646 1.19682 1.20842 1.19790 1.20159 0.83924 0.88564 0.84450 1.90572 1.50156 1.18555 1.86158 1.22055 1.03764 0.93503 0.86156 1.46121 1.12555 1.32356 1.28978 1.21118 0.90553 0.86389 0.90759 1.21210 0.90944 1.05217 1.01660 1.21050 1.00679 1.07938 1.03827 1.22086 0.88171 0.88502 0.90912 1.20891 1.04277 0.97312 0.94541 1.69749 1.32310 1.11215 1.15825 1.18040 0.81116 0.84863 0.82095 1.90995 1.41104 1.42634 1.65493 0.94332 0.92059 0.92663 0.86391 0.93305 0.91916 0.86237 0.87623 0.88711 0.88393 0.89446 0.82994 0.89879 0.89353 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.15 37.16 0.38 -2.26 16 2 C 0.09 1.84 5.43 -4.05 -0.02 1.81 16 3 N -0.43 -10.70 2.56 -114.82 -0.29 -10.99 16 4 C -0.31 -8.57 8.98 -14.93 -0.13 -8.71 16 5 H 0.09 2.68 7.70 -52.49 -0.40 2.27 16 6 C 0.04 0.99 4.92 -17.46 -0.09 0.91 16 7 N -0.86 -23.29 11.34 55.50 0.63 -22.66 16 8 Si 0.92 20.36 29.61 -169.99 -5.03 15.33 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 C 0.44 10.90 7.20 -10.99 -0.08 10.82 16 13 O -0.57 -16.38 16.25 5.55 0.09 -16.29 16 14 C 0.07 1.38 3.80 -5.19 -0.02 1.36 16 15 N -0.49 -9.36 2.08 -118.41 -0.25 -9.61 16 16 C 0.23 3.40 6.68 -81.60 -0.55 2.85 16 17 C -0.13 -1.39 9.14 36.00 0.33 -1.06 16 18 C -0.31 -3.86 9.44 -39.79 -0.38 -4.23 16 19 C 0.26 3.82 6.84 -82.03 -0.56 3.26 16 20 C -0.11 -1.04 10.19 36.01 0.37 -0.67 16 21 N -0.56 -11.05 10.39 -12.80 -0.13 -11.18 16 22 C 0.64 14.43 8.34 -88.18 -0.74 13.70 16 23 O -0.53 -14.17 16.74 4.96 0.08 -14.09 16 24 H 0.04 0.54 6.60 -51.93 -0.34 0.19 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.12 2.75 5.34 -51.93 -0.28 2.48 16 28 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 29 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.12 2.41 6.66 -51.93 -0.35 2.06 16 31 H 0.11 1.55 4.97 -51.93 -0.26 1.30 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.09 1.12 6.31 -51.93 -0.33 0.79 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -38.01 318.90 -6.40 -44.40 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.81 Total: 2.50 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: -1.49 Total: 17.78 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.04 Total: -54.44 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: 0.17 Total: -30.38 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -38.01 -6.40 -44.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626568094.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.166 kcal (2) G-P(sol) polarization free energy of solvation -38.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds