Wall clock time and date at job start Tue Mar 31 2020 00:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 C 1.37102 * 120.00251 * 264.78026 * 3 2 1 5 5 H 1.07993 * 120.00462 * 146.17967 * 4 3 2 6 6 C 1.38950 * 119.99643 * 326.17726 * 4 3 2 7 7 N 1.31420 * 120.00288 * 337.61432 * 6 4 3 8 8 Si 1.86796 * 119.99941 * 157.61470 * 6 4 3 9 9 H 1.48500 * 109.47419 * 59.99963 * 8 6 4 10 10 H 1.48503 * 109.47363 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46961 * 299.99940 * 8 6 4 12 12 C 1.34772 * 119.99959 * 84.77955 * 3 2 1 13 13 O 1.21294 * 120.00392 * 180.02562 * 12 3 2 14 14 C 1.50701 * 119.99823 * 359.97438 * 12 3 2 15 15 N 1.46503 * 109.46930 * 180.02562 * 14 12 3 16 16 C 1.35868 * 119.93595 * 90.00623 * 15 14 12 17 17 C 1.50693 * 120.40578 * 0.02562 * 16 15 14 18 18 C 1.36026 * 119.19015 * 180.29575 * 16 15 14 19 19 C 1.39812 * 119.08057 * 359.46758 * 18 16 15 20 20 C 1.50704 * 120.08428 * 180.25153 * 19 18 16 21 21 N 1.31759 * 119.82725 * 0.53065 * 19 18 16 22 22 C 1.33515 * 120.81938 * 359.73867 * 21 19 18 23 23 O 1.21951 * 119.52320 * 180.02562 * 22 21 19 24 24 H 1.08995 * 109.47379 * 299.99492 * 1 2 3 25 25 H 1.08995 * 109.47464 * 59.99817 * 1 2 3 26 26 H 1.09005 * 109.46965 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46759 * 240.00246 * 2 1 3 28 28 H 1.08995 * 109.47464 * 120.00183 * 2 1 3 29 29 H 0.96992 * 120.00019 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46935 * 60.01074 * 14 12 3 31 31 H 1.08995 * 109.47587 * 300.00422 * 14 12 3 32 32 H 1.08998 * 109.47430 * 89.99907 * 17 16 15 33 33 H 1.09000 * 109.47500 * 210.00760 * 17 16 15 34 34 H 1.08999 * 109.47166 * 330.00318 * 17 16 15 35 35 H 1.08002 * 120.45997 * 179.69633 * 18 16 15 36 36 H 1.08997 * 109.47149 * 180.28314 * 20 19 18 37 37 H 1.09003 * 109.46771 * 300.28397 * 20 19 18 38 38 H 1.08998 * 109.47038 * 60.28202 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3486 1.9916 -1.1824 5 1 2.1810 3.0509 -1.3086 6 6 2.8992 1.2470 -2.2184 7 7 3.5049 0.1096 -1.9605 8 14 2.7785 1.8629 -3.9778 9 1 3.4507 3.1824 -4.0876 10 1 3.4399 0.8937 -4.8880 11 1 1.3493 2.0024 -4.3564 12 6 2.1427 2.0519 1.1623 13 8 2.5466 3.1956 1.1624 14 6 1.7791 1.3812 2.4619 15 7 2.0004 2.3127 3.5708 16 6 0.9974 3.1346 3.9764 17 6 -0.3450 3.0946 3.2928 18 6 1.2214 3.9978 5.0036 19 6 2.4754 4.0077 5.6217 20 6 2.7464 4.9509 6.7654 21 7 3.4213 3.1943 5.1980 22 6 3.1973 2.3530 4.1857 23 8 4.0896 1.6101 3.8130 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8896 -0.4098 -2.6836 30 1 2.4006 0.4966 2.6006 31 1 0.7296 1.0879 2.4383 32 1 -0.9862 2.3690 3.7932 33 1 -0.8064 4.0810 3.3401 34 1 -0.2133 2.8048 2.2503 35 1 0.4401 4.6636 5.3394 36 1 3.7715 4.8177 7.1111 37 1 2.6067 5.9785 6.4298 38 1 2.0569 4.7386 7.5825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626568094.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:34 Heat of formation + Delta-G solvation = -44.208879 kcal Electronic energy + Delta-G solvation = -22541.550055 eV Core-core repulsion = 19191.162850 eV Total energy + Delta-G solvation = -3350.387204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.96059 -40.46623 -38.52717 -37.41897 -36.75968 -34.15098 -33.27569 -31.55263 -31.26008 -29.81804 -28.14537 -26.50050 -24.21386 -24.03160 -22.94489 -21.16927 -19.50471 -18.99755 -18.43041 -18.00166 -17.25926 -17.14355 -16.68935 -15.97651 -15.88609 -15.05072 -14.83250 -14.75268 -14.55294 -14.47240 -14.18832 -14.12916 -13.76504 -13.64743 -13.35362 -13.07695 -12.96119 -12.89401 -12.72931 -12.42657 -12.29296 -12.15207 -11.99682 -11.85771 -11.73302 -10.98075 -10.68516 -10.57348 -9.59837 -9.47421 -8.41784 -6.13460 -0.33738 0.65150 1.29573 1.34181 1.39266 1.50322 1.81592 2.23901 2.63872 2.92527 2.95877 3.18708 3.27834 3.57850 3.72750 3.81525 4.00332 4.27494 4.30949 4.39141 4.49306 4.57131 4.61366 4.66455 4.79646 4.84683 4.88989 4.96455 5.00804 5.20010 5.29151 5.39374 5.45781 5.52607 5.54048 6.09490 6.40014 6.73913 7.05087 7.09819 7.32068 7.88321 8.60303 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.005024 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.239736 B = 5571.970003 C = 5763.211153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 N -0.439 5.439 4 C -0.346 4.346 5 H 0.068 0.932 6 C 0.003 3.997 7 N -0.888 5.888 8 Si 0.988 3.012 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.255 1.255 12 C 0.432 3.568 13 O -0.625 6.625 14 C 0.088 3.912 15 N -0.496 5.496 16 C 0.208 3.792 17 C -0.129 4.129 18 C -0.287 4.287 19 C 0.260 3.740 20 C -0.109 4.109 21 N -0.604 5.604 22 C 0.620 3.380 23 O -0.603 6.603 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.276 0.724 30 H 0.104 0.896 31 H 0.157 0.843 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.211 0.789 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 4.020 12.732 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.040 4.040 3 N -0.157 5.157 4 C -0.473 4.473 5 H 0.086 0.914 6 C -0.200 4.200 7 N -0.525 5.525 8 Si 0.810 3.190 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.179 1.179 12 C 0.220 3.780 13 O -0.512 6.512 14 C -0.038 4.038 15 N -0.208 5.208 16 C 0.090 3.910 17 C -0.186 4.186 18 C -0.311 4.311 19 C 0.103 3.897 20 C -0.166 4.166 21 N -0.343 5.343 22 C 0.324 3.676 23 O -0.483 6.483 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.174 0.826 32 H 0.153 0.847 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.136 3.647 12.528 19.237 hybrid contribution 0.322 -0.092 -1.539 1.575 sum -13.814 3.555 10.989 18.006 Atomic orbital electron populations 1.22096 0.93719 1.03098 1.01988 1.21868 0.95291 0.82982 1.03868 1.43778 1.54774 1.13028 1.04126 1.19410 1.42627 0.95051 0.90248 0.91397 1.26194 0.93088 0.96463 1.04285 1.70016 1.31828 1.16100 1.34589 0.85103 0.79453 0.77808 0.76606 1.20631 1.19687 1.17898 1.20951 0.82954 0.88061 0.86035 1.90512 1.52459 1.20967 1.87267 1.21866 1.06082 0.92340 0.83540 1.45997 1.12923 1.33344 1.28575 1.22115 0.91227 0.85851 0.91773 1.21408 0.89005 1.08304 0.99852 1.21760 1.00939 1.06710 1.01735 1.23119 0.88060 0.87196 0.91360 1.21116 1.04699 0.97161 0.93603 1.69721 1.34859 1.13170 1.16502 1.18432 0.81471 0.84893 0.82843 1.90905 1.43597 1.45775 1.68020 0.91790 0.93339 0.89269 0.88957 0.92325 0.91445 0.87807 0.82608 0.84672 0.85233 0.92007 0.77230 0.91146 0.86578 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 10.15 71.98 0.73 -3.83 16 2 C 0.08 3.48 5.43 86.38 0.47 3.95 16 3 N -0.44 -22.63 2.56 -635.56 -1.63 -24.25 16 4 C -0.35 -19.76 8.98 84.04 0.75 -19.00 16 5 H 0.07 4.13 7.70 -2.91 -0.02 4.11 16 6 C 0.00 0.14 4.92 84.93 0.42 0.56 16 7 N -0.89 -49.11 11.34 21.66 0.25 -48.87 16 8 Si 0.99 42.33 29.61 68.60 2.03 44.37 16 9 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 12 C 0.43 22.07 7.20 87.66 0.63 22.70 16 13 O -0.62 -37.69 16.25 -3.07 -0.05 -37.74 16 14 C 0.09 3.44 3.80 85.63 0.33 3.77 16 15 N -0.50 -19.21 2.08 -646.74 -1.34 -20.55 16 16 C 0.21 5.56 6.68 41.42 0.28 5.84 16 17 C -0.13 -2.14 9.14 71.23 0.65 -1.49 16 18 C -0.29 -6.03 9.44 22.14 0.21 -5.82 16 19 C 0.26 6.95 6.84 42.95 0.29 7.25 16 20 C -0.11 -1.61 10.19 71.24 0.73 -0.89 16 21 N -0.60 -24.64 10.39 -313.21 -3.25 -27.90 16 22 C 0.62 29.54 8.34 179.50 1.50 31.04 16 23 O -0.60 -34.98 16.74 -5.15 -0.09 -35.07 16 24 H 0.06 1.58 6.60 -2.39 -0.02 1.57 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.09 4.40 5.34 -2.39 -0.01 4.38 16 28 H 0.06 2.29 6.66 -2.39 -0.02 2.28 16 29 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.10 4.39 6.66 -2.39 -0.02 4.38 16 31 H 0.16 4.29 4.97 -2.39 -0.01 4.28 16 32 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.13 1.35 8.09 -2.39 -0.02 1.33 16 34 H 0.06 1.40 6.31 -2.39 -0.02 1.39 16 35 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -94.29 318.90 3.98 -90.31 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.08 Total: 15.63 kcal Atomic # 6 Polarization: 37.09 SS G_CDS: 6.98 Total: 44.07 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -5.98 Total: -121.57 kcal Atomic # 8 Polarization: -72.67 SS G_CDS: -0.14 Total: -72.80 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.37 kcal Total: -94.29 3.98 -90.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626568094.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.098 kcal (2) G-P(sol) polarization free energy of solvation -94.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds