Wall clock time and date at job start Tue Mar 31 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99733 * 2 1 4 4 N 1.46491 * 109.47539 * 125.00029 * 3 2 1 5 5 C 1.46508 * 119.99835 * 267.89517 * 4 3 2 6 6 C 1.50701 * 109.46679 * 269.99369 * 5 4 3 7 7 H 1.08002 * 120.00298 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00129 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47148 * 90.00039 * 10 8 6 12 12 H 1.48503 * 109.46867 * 210.00142 * 10 8 6 13 13 H 1.48505 * 109.46813 * 329.99857 * 10 8 6 14 14 C 1.34777 * 120.00315 * 87.88626 * 4 3 2 15 15 O 1.21662 * 120.00056 * 185.90964 * 14 4 3 16 16 C 1.46924 * 119.99929 * 5.91281 * 14 4 3 17 17 C 1.41464 * 126.49424 * 340.26178 * 16 14 4 18 18 N 1.30316 * 108.13683 * 179.97438 * 17 16 14 19 19 N 1.39906 * 109.14859 * 359.97438 * 18 17 16 20 20 C 1.46498 * 125.73734 * 180.02562 * 19 18 17 21 21 C 1.34655 * 108.51651 * 359.75535 * 19 18 17 22 22 O 1.35351 * 126.40755 * 180.24758 * 21 19 18 23 23 C 1.42900 * 117.00103 * 84.08389 * 22 21 19 24 24 H 1.07995 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99503 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00294 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47193 * 4.99471 * 3 2 1 28 28 H 1.08999 * 109.46757 * 245.00132 * 3 2 1 29 29 H 1.08992 * 109.46991 * 29.99376 * 5 4 3 30 30 H 1.09003 * 109.46893 * 149.99795 * 5 4 3 31 31 H 0.96996 * 119.99898 * 180.02562 * 9 8 6 32 32 H 1.07999 * 125.93365 * 359.94140 * 17 16 14 33 33 H 1.09000 * 109.47047 * 85.38790 * 20 19 18 34 34 H 1.09003 * 109.47045 * 205.38196 * 20 19 18 35 35 H 1.08998 * 109.47449 * 325.38557 * 20 19 18 36 36 H 1.09001 * 109.47533 * 304.83475 * 23 22 21 37 37 H 1.09005 * 109.47224 * 64.83291 * 23 22 21 38 38 H 1.09001 * 109.47462 * 184.83450 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1313 5 6 2.5736 1.9073 2.4116 6 6 2.9008 3.3782 2.4328 7 1 3.3740 3.8386 1.5780 8 6 2.5953 4.1365 3.5430 9 7 2.0186 3.5760 4.5837 10 14 3.0003 5.9599 3.5690 11 1 1.8493 6.7303 3.0335 12 1 3.2747 6.3861 4.9649 13 1 4.1989 6.2127 2.7296 14 6 4.2360 0.8275 0.9945 15 8 4.9714 0.7513 1.9607 16 6 4.7021 0.3695 -0.3214 17 6 3.8911 0.0255 -1.4283 18 7 4.6725 -0.3300 -2.4087 19 7 6.0045 -0.2345 -1.9917 20 6 7.1809 -0.5472 -2.8069 21 6 6.0235 0.1988 -0.7169 22 8 7.1236 0.4228 0.0391 23 6 7.7637 1.6921 -0.1067 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.4992 1.7723 2.5354 30 1 3.0989 1.4065 3.2248 31 1 1.8033 4.1096 5.3646 32 1 2.8118 0.0523 -1.4558 33 1 7.4558 0.3263 -3.3982 34 1 8.0113 -0.8215 -2.1564 35 1 6.9509 -1.3789 -3.4728 36 1 8.0106 1.8562 -1.1556 37 1 7.0919 2.4792 0.2358 38 1 8.6767 1.7092 0.4885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637544085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:16 Heat of formation + Delta-G solvation = 59.670134 kcal Electronic energy + Delta-G solvation = -22299.952164 eV Core-core repulsion = 18954.069492 eV Total energy + Delta-G solvation = -3345.882672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47892 -38.59694 -38.02722 -35.64644 -33.50666 -32.99529 -31.97120 -29.84423 -28.27353 -26.93630 -26.53759 -25.58774 -23.23061 -21.59962 -20.98091 -19.94691 -18.91753 -17.49823 -16.56283 -16.37878 -16.31598 -15.73348 -15.21893 -14.83934 -14.68338 -14.22997 -14.14364 -13.77771 -13.56729 -13.05588 -12.86616 -12.64314 -12.32070 -12.05884 -11.91877 -11.31773 -11.21768 -11.20060 -11.01528 -10.84185 -10.54351 -10.21607 -10.08916 -9.61514 -9.40879 -9.10735 -8.88214 -8.42397 -8.38410 -7.55767 -5.99765 -4.04475 1.41144 2.17613 2.37180 2.45119 3.31618 3.38131 3.41773 3.56887 3.95121 4.21074 4.43739 4.54150 4.93145 4.98716 5.03284 5.18803 5.19967 5.29251 5.33480 5.38594 5.42303 5.47218 5.59950 5.65902 5.85505 6.04885 6.13568 6.25576 6.46665 6.82537 6.95127 7.19638 7.43583 7.54837 7.56514 7.65116 7.97997 8.29339 8.52605 8.96121 9.23256 9.60543 11.08116 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.006107 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.755993 B = 4584.034275 C = 5760.768358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.118 3.882 4 N -0.588 5.588 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.583 3.417 15 O -0.536 6.536 16 C -0.276 4.276 17 C 0.066 3.934 18 N -0.287 5.287 19 N -0.377 5.377 20 C 0.096 3.904 21 C 0.307 3.693 22 O -0.294 6.294 23 C 0.036 3.964 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.214 0.786 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -6.578 -15.541 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.006 4.006 4 N -0.318 5.318 5 C 0.129 3.871 6 C -0.564 4.564 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.370 3.630 15 O -0.413 6.413 16 C -0.292 4.292 17 C -0.119 4.119 18 N -0.110 5.110 19 N -0.168 5.168 20 C -0.045 4.045 21 C 0.135 3.865 22 O -0.203 6.203 23 C -0.059 4.059 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.368 -7.085 -15.871 18.510 hybrid contribution 0.181 1.433 0.728 1.617 sum 6.549 -5.652 -15.143 17.440 Atomic orbital electron populations 1.23852 0.95749 1.01859 0.99616 1.23516 0.96545 0.99292 1.00672 1.21081 0.93298 0.95244 0.90932 1.47955 1.11149 1.58551 1.14177 1.19281 0.95583 0.92960 0.79231 1.21458 1.39853 0.93702 1.01435 0.92516 1.24923 0.95172 0.98659 0.95290 1.69938 1.41963 1.36060 1.05304 0.86527 0.78630 0.85133 0.77284 1.20663 1.21121 1.20016 1.16935 0.82135 0.77900 0.86035 1.90772 1.54806 1.56130 1.39625 1.20410 0.91235 1.18819 0.98713 1.24981 1.01155 0.96302 0.89456 1.77172 0.85171 1.25772 1.22919 1.48895 1.06816 1.51756 1.09320 1.21906 0.84241 1.02686 0.95699 1.19294 0.87904 0.96466 0.82848 1.86048 1.39154 1.36222 1.58860 1.23152 0.98048 0.83737 1.00942 0.88170 0.88649 0.87303 0.89350 0.89498 0.94897 0.93626 0.92766 0.77016 0.90677 0.89159 0.88921 0.93778 0.91857 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.18 -2.61 7.97 -36.03 -0.29 -2.90 16 3 C 0.12 2.00 5.36 -5.20 -0.03 1.97 16 4 N -0.59 -13.01 2.44 -177.89 -0.43 -13.45 16 5 C 0.25 6.63 5.20 -5.19 -0.03 6.60 16 6 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.58 13.31 7.61 -12.74 -0.10 13.21 16 15 O -0.54 -14.42 16.13 3.29 0.05 -14.37 16 16 C -0.28 -5.17 5.87 -104.87 -0.62 -5.78 16 17 C 0.07 1.02 9.27 -16.97 -0.16 0.87 16 18 N -0.29 -4.29 12.48 30.88 0.39 -3.90 16 19 N -0.38 -5.30 3.99 -67.67 -0.27 -5.57 16 20 C 0.10 0.83 11.41 59.85 0.68 1.52 16 21 C 0.31 5.21 6.97 -16.03 -0.11 5.10 16 22 O -0.29 -4.90 9.93 -19.68 -0.20 -5.10 16 23 C 0.04 0.46 11.13 101.05 1.12 1.59 16 24 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 25 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 26 H 0.11 1.54 7.53 -52.49 -0.40 1.14 16 27 H 0.09 1.51 7.71 -51.93 -0.40 1.11 16 28 H 0.09 1.30 4.44 -51.93 -0.23 1.07 16 29 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.05 1.38 7.35 -51.93 -0.38 1.00 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.21 2.81 3.64 -52.49 -0.19 2.62 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.67 8.03 -51.93 -0.42 0.26 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -35.67 328.56 -4.24 -39.92 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.93 Total: -0.09 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 0.48 Total: 6.75 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.42 Total: -48.87 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.14 Total: -19.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.67 -4.24 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637544085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.585 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds