Wall clock time and date at job start Tue Mar 31 2020 01:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99733 * 2 1 4 4 N 1.46491 * 109.47539 * 125.00029 * 3 2 1 5 5 C 1.46508 * 119.99835 * 267.89517 * 4 3 2 6 6 C 1.50701 * 109.46679 * 269.99369 * 5 4 3 7 7 H 1.08002 * 120.00298 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99993 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00129 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47148 * 90.00039 * 10 8 6 12 12 H 1.48503 * 109.46867 * 210.00142 * 10 8 6 13 13 H 1.48505 * 109.46813 * 329.99857 * 10 8 6 14 14 C 1.34777 * 120.00315 * 87.88626 * 4 3 2 15 15 O 1.21662 * 120.00056 * 185.90964 * 14 4 3 16 16 C 1.46924 * 119.99929 * 5.91281 * 14 4 3 17 17 C 1.41464 * 126.49424 * 340.26178 * 16 14 4 18 18 N 1.30316 * 108.13683 * 179.97438 * 17 16 14 19 19 N 1.39906 * 109.14859 * 359.97438 * 18 17 16 20 20 C 1.46498 * 125.73734 * 180.02562 * 19 18 17 21 21 C 1.34655 * 108.51651 * 359.75535 * 19 18 17 22 22 O 1.35351 * 126.40755 * 180.24758 * 21 19 18 23 23 C 1.42900 * 117.00103 * 84.08389 * 22 21 19 24 24 H 1.07995 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08004 * 119.99503 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00294 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47193 * 4.99471 * 3 2 1 28 28 H 1.08999 * 109.46757 * 245.00132 * 3 2 1 29 29 H 1.08992 * 109.46991 * 29.99376 * 5 4 3 30 30 H 1.09003 * 109.46893 * 149.99795 * 5 4 3 31 31 H 0.96996 * 119.99898 * 180.02562 * 9 8 6 32 32 H 1.07999 * 125.93365 * 359.94140 * 17 16 14 33 33 H 1.09000 * 109.47047 * 85.38790 * 20 19 18 34 34 H 1.09003 * 109.47045 * 205.38196 * 20 19 18 35 35 H 1.08998 * 109.47449 * 325.38557 * 20 19 18 36 36 H 1.09001 * 109.47533 * 304.83475 * 23 22 21 37 37 H 1.09005 * 109.47224 * 64.83291 * 23 22 21 38 38 H 1.09001 * 109.47462 * 184.83450 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1313 5 6 2.5736 1.9073 2.4116 6 6 2.9008 3.3782 2.4328 7 1 3.3740 3.8386 1.5780 8 6 2.5953 4.1365 3.5430 9 7 2.0186 3.5760 4.5837 10 14 3.0003 5.9599 3.5690 11 1 1.8493 6.7303 3.0335 12 1 3.2747 6.3861 4.9649 13 1 4.1989 6.2127 2.7296 14 6 4.2360 0.8275 0.9945 15 8 4.9714 0.7513 1.9607 16 6 4.7021 0.3695 -0.3214 17 6 3.8911 0.0255 -1.4283 18 7 4.6725 -0.3300 -2.4087 19 7 6.0045 -0.2345 -1.9917 20 6 7.1809 -0.5472 -2.8069 21 6 6.0235 0.1988 -0.7169 22 8 7.1236 0.4228 0.0391 23 6 7.7637 1.6921 -0.1067 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8500 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 1.4992 1.7723 2.5354 30 1 3.0989 1.4065 3.2248 31 1 1.8033 4.1096 5.3646 32 1 2.8118 0.0523 -1.4558 33 1 7.4558 0.3263 -3.3982 34 1 8.0113 -0.8215 -2.1564 35 1 6.9509 -1.3789 -3.4728 36 1 8.0106 1.8562 -1.1556 37 1 7.0919 2.4792 0.2358 38 1 8.6767 1.7092 0.4885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637544085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:15 Heat of formation + Delta-G solvation = 33.659595 kcal Electronic energy + Delta-G solvation = -22301.080066 eV Core-core repulsion = 18954.069492 eV Total energy + Delta-G solvation = -3347.010574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.72593 -40.26831 -39.25619 -37.25051 -35.25854 -34.26207 -33.66137 -31.19150 -29.84629 -28.21597 -27.73430 -27.05102 -25.13155 -22.97788 -22.29822 -21.21126 -20.28722 -18.81363 -18.59640 -17.91991 -17.52917 -17.25082 -16.59631 -16.30145 -16.00762 -15.85063 -15.60810 -15.01674 -14.86134 -14.40994 -14.24282 -13.92400 -13.60115 -13.47852 -13.28204 -12.98378 -12.95087 -12.61642 -12.48205 -12.42225 -12.21551 -12.18506 -11.65412 -11.33970 -10.68905 -10.61798 -10.53710 -10.25998 -9.79823 -9.36119 -8.19171 -6.34445 0.15108 1.06014 1.09359 1.31083 1.37985 1.40750 1.51121 2.24070 2.39346 2.49032 2.67857 3.09877 3.38943 3.87775 3.99659 4.07874 4.10802 4.23574 4.28021 4.33557 4.37144 4.38850 4.54317 4.60977 4.63516 4.86765 5.02235 5.06740 5.08710 5.26406 5.34676 5.56046 5.73009 5.79582 5.97982 6.09703 6.25160 6.37129 6.72842 6.80060 7.30487 7.51631 8.87918 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.006107 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.755993 B = 4584.034275 C = 5760.768358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.201 4.201 3 C 0.117 3.883 4 N -0.592 5.592 5 C 0.266 3.734 6 C -0.542 4.542 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.578 3.422 15 O -0.594 6.594 16 C -0.314 4.314 17 C 0.078 3.922 18 N -0.284 5.284 19 N -0.363 5.363 20 C 0.082 3.918 21 C 0.309 3.691 22 O -0.314 6.314 23 C 0.033 3.967 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.025 0.975 30 H -0.003 1.003 31 H 0.267 0.733 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.032 0.968 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.030 -6.232 -18.205 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.221 4.221 3 C -0.005 4.005 4 N -0.321 5.321 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.792 3.208 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.368 3.632 15 O -0.477 6.477 16 C -0.330 4.330 17 C -0.107 4.107 18 N -0.107 5.107 19 N -0.153 5.153 20 C -0.057 4.057 21 C 0.134 3.866 22 O -0.224 6.224 23 C -0.061 4.061 24 H 0.122 0.878 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.043 0.957 30 H 0.015 0.985 31 H 0.076 0.924 32 H 0.247 0.753 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.665 -6.755 -18.617 20.896 hybrid contribution 0.123 1.260 1.506 1.967 sum 6.788 -5.495 -17.112 19.212 Atomic orbital electron populations 1.24118 0.95125 1.03278 0.96268 1.23315 0.97072 0.98030 1.03636 1.21330 0.92711 0.96732 0.89752 1.47918 1.12193 1.57961 1.14025 1.18731 0.94152 0.92195 0.80436 1.21687 1.40146 0.94583 1.01687 0.92917 1.25849 0.94698 1.03754 0.94666 1.70064 1.42654 1.38054 1.05938 0.85412 0.78884 0.79024 0.77454 1.18725 1.20620 1.19756 1.17516 0.81592 0.77005 0.87131 1.90715 1.56308 1.58762 1.41865 1.20118 0.93056 1.22166 0.97667 1.25086 1.01847 0.95593 0.88136 1.77157 0.85612 1.25472 1.22485 1.49250 1.07749 1.49769 1.08523 1.22427 0.82663 1.04674 0.95929 1.19344 0.87564 0.95843 0.83815 1.86002 1.39055 1.37779 1.59518 1.23369 0.97729 0.81350 1.03670 0.87766 0.86138 0.86920 0.89779 0.87435 0.95714 0.98460 0.92404 0.75307 0.88132 0.87751 0.86928 0.90224 0.94897 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 14.32 67.78 0.97 -2.57 16 2 C -0.20 -5.65 7.97 25.64 0.20 -5.45 16 3 C 0.12 3.96 5.36 85.63 0.46 4.42 16 4 N -0.59 -27.36 2.44 -834.96 -2.04 -29.40 16 5 C 0.27 14.99 5.20 85.63 0.45 15.44 16 6 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 7 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.54 5.46 84.65 0.46 1.01 16 9 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 10 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 14 C 0.58 27.68 7.61 86.52 0.66 28.34 16 15 O -0.59 -34.16 16.13 -2.38 -0.04 -34.20 16 16 C -0.31 -11.88 5.87 -20.03 -0.12 -11.99 16 17 C 0.08 2.33 9.27 85.71 0.79 3.13 16 18 N -0.28 -7.84 12.48 -56.23 -0.70 -8.54 16 19 N -0.36 -9.35 3.99 -479.81 -1.91 -11.27 16 20 C 0.08 1.13 11.41 127.77 1.46 2.59 16 21 C 0.31 10.30 6.97 84.44 0.59 10.88 16 22 O -0.31 -10.40 9.93 -84.56 -0.84 -11.24 16 23 C 0.03 0.82 11.13 113.37 1.26 2.08 16 24 H 0.10 2.39 7.84 -2.91 -0.02 2.36 16 25 H 0.12 2.27 8.06 -2.91 -0.02 2.25 16 26 H 0.11 3.10 7.53 -2.91 -0.02 3.08 16 27 H 0.08 2.88 7.71 -2.38 -0.02 2.86 16 28 H 0.11 3.16 4.44 -2.39 -0.01 3.15 16 29 H 0.02 1.41 8.07 -2.39 -0.02 1.39 16 30 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.23 5.74 3.64 -2.91 -0.01 5.73 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.20 8.03 -2.39 -0.02 1.18 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -81.56 328.56 5.27 -76.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.07 Total: 11.60 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 7.42 Total: 16.12 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.37 Total: -105.76 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.88 Total: -45.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -81.56 5.27 -76.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637544085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.948 kcal (2) G-P(sol) polarization free energy of solvation -81.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds