Wall clock time and date at job start Tue Mar 31 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40084 * 126.03871 * 2 1 4 4 C 1.30839 * 108.20436 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20318 * 359.78457 * 4 3 2 6 6 C 1.34943 * 126.03548 * 180.02562 * 2 1 3 7 7 C 1.50710 * 126.12788 * 359.94470 * 6 2 1 8 8 H 1.09006 * 109.48592 * 25.02517 * 7 6 2 9 9 C 1.53088 * 109.47911 * 265.00146 * 7 6 2 10 10 C 1.53174 * 109.16555 * 182.40872 * 9 7 6 11 11 H 1.09009 * 109.53884 * 297.02379 * 10 9 7 12 12 N 1.46492 * 109.54573 * 176.84441 * 10 9 7 13 13 C 1.34784 * 120.00032 * 155.17563 * 12 10 9 14 14 O 1.21682 * 119.99709 * 359.97438 * 13 12 10 15 15 C 1.46375 * 120.00017 * 179.97438 * 13 12 10 16 16 H 1.07997 * 120.00017 * 6.06241 * 15 13 12 17 17 C 1.40048 * 119.99791 * 186.05788 * 15 13 12 18 18 N 1.30667 * 120.00227 * 353.85499 * 17 15 13 19 19 Si 1.86801 * 119.99713 * 173.85184 * 17 15 13 20 20 H 1.48499 * 109.47082 * 275.01119 * 19 17 15 21 21 H 1.48502 * 109.47315 * 35.01165 * 19 17 15 22 22 H 1.48498 * 109.46972 * 155.01320 * 19 17 15 23 23 C 1.53179 * 109.10835 * 56.93125 * 10 9 7 24 24 C 1.53108 * 109.15744 * 303.15484 * 23 10 9 25 25 O 1.42895 * 109.47996 * 145.05337 * 7 6 2 26 26 H 1.08997 * 109.46927 * 269.97477 * 1 2 3 27 27 H 1.09009 * 109.46926 * 29.97101 * 1 2 3 28 28 H 1.08994 * 109.47350 * 149.96751 * 1 2 3 29 29 H 1.07995 * 125.89599 * 180.02562 * 4 3 2 30 30 H 1.07998 * 126.04199 * 180.22541 * 5 4 3 31 31 H 1.09005 * 109.52681 * 62.49607 * 9 7 6 32 32 H 1.09010 * 109.57079 * 302.34543 * 9 7 6 33 33 H 0.96998 * 120.00262 * 335.17885 * 12 10 9 34 34 H 0.97002 * 120.00373 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.52063 * 62.97307 * 23 10 9 36 36 H 1.09000 * 109.52256 * 183.16425 * 23 10 9 37 37 H 1.09004 * 109.40786 * 297.49578 * 24 23 10 38 38 H 1.08998 * 109.48923 * 177.51006 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 3.5437 -0.6666 0.0041 6 6 2.2589 -1.0912 -0.0005 7 6 1.7972 -2.5259 0.0000 8 1 0.7991 -2.5869 -0.4339 9 6 1.7617 -3.0502 1.4379 10 6 1.3499 -4.5255 1.4252 11 1 0.3405 -4.6188 1.0242 12 7 1.3861 -5.0562 2.7901 13 6 0.6229 -6.1167 3.1213 14 8 -0.0964 -6.6329 2.2866 15 6 0.6595 -6.6473 4.4850 16 1 1.2210 -6.1319 5.2501 17 6 -0.0337 -7.8234 4.7975 18 7 -0.8092 -8.3812 3.9060 19 14 0.1504 -8.5946 6.4889 20 1 1.3521 -9.4667 6.5071 21 1 0.3000 -7.5242 7.5074 22 1 -1.0547 -9.4058 6.7968 23 6 2.3260 -5.3110 0.5439 24 6 2.3412 -4.6979 -0.8590 25 8 2.7018 -3.3178 -0.7722 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8896 -0.5143 29 1 4.4054 1.3709 -0.0003 30 1 4.4210 -1.2964 0.0083 31 1 1.0394 -2.4753 2.0176 32 1 2.7501 -2.9517 1.8870 33 1 1.9592 -4.6444 3.4556 34 1 -1.2891 -9.1960 4.1223 35 1 3.3265 -5.2597 0.9733 36 1 2.0068 -6.3515 0.4847 37 1 1.3502 -4.7873 -1.3041 38 1 3.0669 -5.2250 -1.4783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640836530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:14 Heat of formation + Delta-G solvation = -8.849928 kcal Electronic energy + Delta-G solvation = -21799.150522 eV Core-core repulsion = 18450.296597 eV Total energy + Delta-G solvation = -3348.853925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37079 -39.29917 -37.16622 -34.16963 -33.49467 -32.45822 -32.18125 -30.52002 -28.95187 -26.82373 -26.40154 -24.20080 -23.51167 -21.26855 -20.49713 -19.80772 -19.42762 -17.37245 -17.01791 -16.01057 -15.70998 -15.50484 -15.34794 -14.76695 -14.50289 -14.18043 -14.08744 -13.67923 -13.40399 -13.07714 -12.77394 -12.52230 -12.44986 -12.41649 -12.03817 -11.28669 -11.25344 -11.12857 -10.97782 -10.81383 -10.55451 -10.51285 -10.30095 -10.12644 -9.71776 -9.29289 -8.89087 -8.54354 -7.67736 -7.59331 -6.24528 -4.69011 1.75164 2.34835 2.80512 3.11486 3.18281 3.20840 3.72457 4.05735 4.41611 4.47569 4.53926 4.71143 4.83747 5.03109 5.07195 5.09490 5.14779 5.29194 5.35069 5.50517 5.53523 5.65272 5.72730 5.77113 5.79645 5.91914 6.07277 6.13105 6.25952 6.51327 6.61937 6.68282 6.86968 7.21075 7.39100 7.64180 7.86536 8.03202 8.28085 8.97903 9.46751 10.54041 10.72216 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028664 B = 0.003769 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.614265 B = 7428.197415 C = 7736.276504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.369 5.369 3 N -0.298 5.298 4 C 0.042 3.958 5 C -0.246 4.246 6 C 0.091 3.909 7 C 0.163 3.837 8 H 0.068 0.932 9 C -0.146 4.146 10 C 0.158 3.842 11 H 0.076 0.924 12 N -0.761 5.761 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.547 4.547 16 H 0.067 0.933 17 C 0.089 3.911 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.266 1.266 22 H -0.280 1.280 23 C -0.166 4.166 24 C 0.066 3.934 25 O -0.371 6.371 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.183 0.817 30 H 0.150 0.850 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.381 0.619 34 H 0.269 0.731 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 12.702 -7.224 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.153 5.153 3 N -0.119 5.119 4 C -0.144 4.144 5 C -0.275 4.275 6 C -0.036 4.036 7 C 0.103 3.897 8 H 0.086 0.914 9 C -0.185 4.185 10 C 0.051 3.949 11 H 0.094 0.906 12 N -0.415 5.415 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.584 4.584 16 H 0.086 0.914 17 C -0.131 4.131 18 N -0.396 5.396 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.190 1.190 22 H -0.205 1.205 23 C -0.205 4.205 24 C -0.011 4.011 25 O -0.290 6.290 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.200 0.800 30 H 0.168 0.832 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.212 0.788 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.278 13.242 -7.972 16.038 hybrid contribution 0.710 -1.035 1.314 1.818 sum 4.988 12.207 -6.658 14.772 Atomic orbital electron populations 1.21915 0.74379 1.04505 1.03760 1.48411 1.06491 1.03036 1.57335 1.77350 1.01953 1.07536 1.25085 1.23855 0.95163 0.95180 1.00169 1.21242 0.96554 0.94526 1.15209 1.20571 0.91676 0.89254 1.02113 1.20143 0.92600 0.84651 0.92312 0.91434 1.22456 1.03399 0.97304 0.95368 1.20431 0.98699 0.89578 0.86159 0.90603 1.46182 1.49759 1.36341 1.09205 1.18221 0.78565 0.77839 0.89387 1.90588 1.43184 1.60218 1.52385 1.20876 1.33230 1.10030 0.94237 0.91440 1.25691 0.93096 0.96421 0.97914 1.70012 1.19874 1.15959 1.33763 0.86399 0.78273 0.79488 0.82665 1.19629 1.18981 1.20508 1.22664 1.00884 1.01799 0.95135 1.22659 1.00749 0.80469 0.97228 1.87891 1.49937 1.19882 1.71255 0.90385 0.89164 0.89437 0.79983 0.83217 0.90731 0.90262 0.78782 0.92075 0.91349 0.89833 0.92971 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.27 59.85 0.67 1.55 16 2 N -0.37 -4.73 4.01 -63.88 -0.26 -4.98 16 3 N -0.30 -4.07 12.58 30.62 0.39 -3.69 16 4 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 5 C -0.25 -3.16 10.37 -40.01 -0.41 -3.58 16 6 C 0.09 1.21 6.00 -82.26 -0.49 0.72 16 7 C 0.16 2.16 2.90 -27.83 -0.08 2.08 16 8 H 0.07 0.83 6.95 -51.93 -0.36 0.47 16 9 C -0.15 -2.10 4.88 -26.60 -0.13 -2.23 16 10 C 0.16 2.84 2.54 -67.75 -0.17 2.66 16 11 H 0.08 1.53 7.58 -51.92 -0.39 1.14 16 12 N -0.76 -16.24 5.08 -55.04 -0.28 -16.52 16 13 C 0.56 15.23 7.71 -12.98 -0.10 15.13 16 14 O -0.58 -18.03 14.71 5.20 0.08 -17.95 16 15 C -0.55 -15.11 9.53 -35.63 -0.34 -15.45 16 16 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 17 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 18 N -0.77 -22.55 11.85 55.55 0.66 -21.89 16 19 Si 0.91 19.82 29.56 -169.99 -5.03 14.79 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 23 C -0.17 -2.74 5.72 -26.58 -0.15 -2.89 16 24 C 0.07 0.89 6.84 37.21 0.25 1.14 16 25 O -0.37 -5.21 10.10 -35.23 -0.36 -5.56 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.09 0.68 6.98 -51.93 -0.36 0.32 16 29 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 33 H 0.38 7.27 8.58 -40.82 -0.35 6.92 16 34 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 321.98 15.07 4.85 4.85 Total: -1.00 -34.86 321.98 -6.44 -41.30 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.24 Total: 7.88 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -1.26 Total: 1.77 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.51 Total: -47.08 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.28 Total: -23.52 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.86 -6.44 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640836530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.452 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds